RNA–Protein interactions for RNA: ENST00000619655.4

MMP28-207, Transcript of matrix metallopeptidase 28, humanhuman

TSL 2

Gene MMP28, Length 2,336 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-207ENST00000619655 NISCHQ9Y2I1 1504 aa44.47■■■■■ 4.71
MMP28-207ENST00000619655 CCDC180Q9P1Z9 1646 aa38.43■■■■□ 3.74
MMP28-207ENST00000619655 ZCCHC6Q5VYS8 1495 aaKnown RBP37.42■■■■□ 3.58
MMP28-207ENST00000619655 DCAF8L2P0C7V8 631 aa37.05■■■■□ 3.52
MMP28-207ENST00000619655 SHROOM4Q9ULL8 1493 aa37■■■■□ 3.51
MMP28-207ENST00000619655 DCAF1Q9Y4B6 1507 aa36.56■■■■□ 3.44
MMP28-207ENST00000619655 ABCC9O60706 1549 aa36.33■■■■□ 3.41
MMP28-207ENST00000619655 MYO15BQ96JP2 1530 aa35.91■■■■□ 3.34
MMP28-207ENST00000619655 SUPT5HO00267 1087 aaKnown RBP35.79■■■■□ 3.32
MMP28-207ENST00000619655 NACADO15069 1562 aa35.73■■■■□ 3.31
MMP28-207ENST00000619655 SCRIBQ14160 1630 aa35.73■■■■□ 3.31
MMP28-207ENST00000619655 RB1CC1Q8TDY2 1594 aa35.39■■■■□ 3.26
MMP28-207ENST00000619655 UNC13AQ9UPW8 1703 aa34.8■■■■□ 3.16
MMP28-207ENST00000619655 RSF1Q96T23 1441 aaPredicted RBP34.72■■■■□ 3.15
MMP28-207ENST00000619655 CECR2Q9BXF3 1484 aa34.67■■■■□ 3.14
MMP28-207ENST00000619655 MROH2BQ7Z745 1585 aa34.47■■■■□ 3.11
MMP28-207ENST00000619655 PABPN1Q86U42 306 aaKnown RBP eCLIP34.45■■■■□ 3.11
MMP28-207ENST00000619655 BICRAQ9NZM4 1560 aa34.36■■■■□ 3.09
MMP28-207ENST00000619655 CHIC1Q5VXU3 224 aa34.29■■■■□ 3.08
MMP28-207ENST00000619655 BAZ1AQ9NRL2 1556 aaPredicted RBP34.28■■■■□ 3.08
MMP28-207ENST00000619655 WIZO95785 1651 aa34.26■■■■□ 3.08
MMP28-207ENST00000619655 SMARCA4P51532 1647 aa34.12■■■■□ 3.05
MMP28-207ENST00000619655 TOP2AP11388 1531 aaKnown RBP33.76■■■■□ 3
MMP28-207ENST00000619655 PEG3Q9GZU2 1588 aa33.53■■■□□ 2.96
MMP28-207ENST00000619655 CCDC88BA6NC98 1476 aa33.52■■■□□ 2.96
MMP28-207ENST00000619655 SMARCA2P51531 1590 aa33.51■■■□□ 2.96
MMP28-207ENST00000619655 TRIM41Q8WV44 630 aa33.48■■■□□ 2.95
MMP28-207ENST00000619655 ATAD2BQ9ULI0 1458 aa33.45■■■□□ 2.94
MMP28-207ENST00000619655 EIF4G1Q04637 1599 aaKnown RBP33.34■■■□□ 2.93
MMP28-207ENST00000619655 BAZ1BQ9UIG0 1483 aaKnown RBP33.34■■■□□ 2.93
MMP28-207ENST00000619655 LOC105371045A0A1W2PR82 267 aa33.18■■■□□ 2.9
MMP28-207ENST00000619655 FAM9AQ8IZU1 332 aaPredicted RBP33.1■■■□□ 2.89
MMP28-207ENST00000619655 ABCC8Q09428 1581 aa33.09■■■□□ 2.89
MMP28-207ENST00000619655 NCAPD3P42695 1498 aa33■■■□□ 2.87
MMP28-207ENST00000619655 HMGXB3Q12766 1538 aa32.97■■■□□ 2.87
MMP28-207ENST00000619655 EHMT2Q96KQ7 1210 aa32.8■■■□□ 2.84
MMP28-207ENST00000619655 CC2D2AQ9P2K1 1620 aa32.77■■■□□ 2.84
MMP28-207ENST00000619655 WRNQ14191 1432 aaPredicted RBP eCLIP32.69■■■□□ 2.82
MMP28-207ENST00000619655 SYNJ1O43426 1573 aa32.57■■■□□ 2.8
MMP28-207ENST00000619655 SOGA1O94964 1423 aa32.53■■■□□ 2.8
MMP28-207ENST00000619655 CFTRP13569 1480 aa32.44■■■□□ 2.78
MMP28-207ENST00000619655 RUSC2Q8N2Y8 1516 aa32.41■■■□□ 2.78
MMP28-207ENST00000619655 TOP2BQ02880 1626 aa32.3■■■□□ 2.76
MMP28-207ENST00000619655 EEA1Q15075 1411 aa32.29■■■□□ 2.76
MMP28-207ENST00000619655 CADPSQ9ULU8 1353 aa32.27■■■□□ 2.76
MMP28-207ENST00000619655 CSRNP3Q8WYN3 585 aa32.27■■■□□ 2.76
MMP28-207ENST00000619655 PRDM2Q13029 1718 aa32.25■■■□□ 2.75
MMP28-207ENST00000619655 BIVM-ERCC5R4GMW8 1640 aa32.22■■■□□ 2.75
MMP28-207ENST00000619655 CUX1P39880 1505 aa32.18■■■□□ 2.74
MMP28-207ENST00000619655 PCGF6Q9BYE7 350 aa32.14■■■□□ 2.73
MMP28-207ENST00000619655 UBTFP17480 764 aaKnown RBP32.05■■■□□ 2.72
MMP28-207ENST00000619655 DNAJC5BQ9UF47 199 aa32.04■■■□□ 2.72
MMP28-207ENST00000619655 NESP48681 1621 aa32.03■■■□□ 2.72
MMP28-207ENST00000619655 GOLGA3Q08378 1498 aa32■■■□□ 2.71
MMP28-207ENST00000619655 FANCD2Q9BXW9 1451 aa31.97■■■□□ 2.71
MMP28-207ENST00000619655 TNIKQ9UKE5 1360 aa31.94■■■□□ 2.7
MMP28-207ENST00000619655 CEP164Q9UPV0 1460 aa31.94■■■□□ 2.7
MMP28-207ENST00000619655 CEP162Q5TB80 1403 aa31.92■■■□□ 2.7
MMP28-207ENST00000619655 KIF21BO75037 1637 aa31.9■■■□□ 2.7
MMP28-207ENST00000619655 LAMC3Q9Y6N6 1575 aa31.83■■■□□ 2.69
MMP28-207ENST00000619655 TRIM26Q12899 539 aaPredicted RBP31.82■■■□□ 2.68
MMP28-207ENST00000619655 RAPGEF2Q9Y4G8 1499 aa31.81■■■□□ 2.68
MMP28-207ENST00000619655 KIF27Q86VH2 1401 aa31.79■■■□□ 2.68
MMP28-207ENST00000619655 FGD5Q6ZNL6 1462 aa31.79■■■□□ 2.68
MMP28-207ENST00000619655 PPARGC1BQ86YN6 1023 aaKnown RBP31.76■■■□□ 2.67
MMP28-207ENST00000619655 CUX2O14529 1486 aa31.69■■■□□ 2.66
MMP28-207ENST00000619655 DNMBPQ6XZF7 1577 aa31.68■■■□□ 2.66
MMP28-207ENST00000619655 TOPBP1Q92547 1522 aa31.65■■■□□ 2.66
MMP28-207ENST00000619655 RANGAP1P46060 587 aaPredicted RBP31.64■■■□□ 2.66
MMP28-207ENST00000619655 PRXQ9BXM0 1461 aa31.64■■■□□ 2.66
MMP28-207ENST00000619655 PDS5BQ9NTI5 1447 aa31.63■■■□□ 2.65
MMP28-207ENST00000619655 ERICH3Q5RHP9 1530 aa31.59■■■□□ 2.65
MMP28-207ENST00000619655 KIF21AQ7Z4S6 1674 aa31.57■■■□□ 2.64
MMP28-207ENST00000619655 CLIP1P30622 1438 aa31.56■■■□□ 2.64
MMP28-207ENST00000619655 POLA1P09884 1462 aaPredicted RBP31.56■■■□□ 2.64
MMP28-207ENST00000619655 RAD54L2Q9Y4B4 1467 aa31.56■■■□□ 2.64
MMP28-207ENST00000619655 URB2Q14146 1524 aaKnown RBP31.55■■■□□ 2.64
MMP28-207ENST00000619655 IGF1RP08069 1367 aa31.48■■■□□ 2.63
MMP28-207ENST00000619655 TTBK1Q5TCY1 1321 aaPredicted RBP31.48■■■□□ 2.63
MMP28-207ENST00000619655 ABCA10Q8WWZ4 1543 aa31.41■■■□□ 2.62
MMP28-207ENST00000619655 HRCP23327 699 aa31.39■■■□□ 2.62
MMP28-207ENST00000619655 CARMIL1Q5VZK9 1371 aa31.36■■■□□ 2.61
MMP28-207ENST00000619655 VPS8Q8N3P4 1428 aa31.29■■■□□ 2.6
MMP28-207ENST00000619655 WDR97A6NE52 1622 aa31.26■■■□□ 2.59
MMP28-207ENST00000619655 TDRD9Q8NDG6 1382 aaKnown RBP31.23■■■□□ 2.59
MMP28-207ENST00000619655 MRC2Q9UBG0 1479 aa31.2■■■□□ 2.58
MMP28-207ENST00000619655 ARAP1Q96P48 1450 aa31.17■■■□□ 2.58
MMP28-207ENST00000619655 APLP2Q06481 763 aa31.14■■■□□ 2.58
MMP28-207ENST00000619655 ABCA5Q8WWZ7 1642 aa31.13■■■□□ 2.57
MMP28-207ENST00000619655 CUL7Q14999 1698 aa31.12■■■□□ 2.57
MMP28-207ENST00000619655 GAPVD1Q14C86 1478 aa31.12■■■□□ 2.57
MMP28-207ENST00000619655 TARBP1Q13395 1621 aaKnown RBP31.1■■■□□ 2.57
MMP28-207ENST00000619655 ARHGAP35Q9NRY4 1499 aa31.09■■■□□ 2.57
MMP28-207ENST00000619655 ERCC6Q03468 1493 aa31.07■■■□□ 2.56
MMP28-207ENST00000619655 WDR62O43379 1518 aa30.98■■■□□ 2.55
MMP28-207ENST00000619655 AQRO60306 1485 aaKnown RBP eCLIP30.95■■■□□ 2.55
MMP28-207ENST00000619655 PBRM1Q86U86 1689 aa30.9■■■□□ 2.54
MMP28-207ENST00000619655 CTTNBP2Q8WZ74 1663 aa30.9■■■□□ 2.54
MMP28-207ENST00000619655 P3H3Q8IVL6 736 aa30.9■■■□□ 2.54
MMP28-207ENST00000619655 IFT140Q96RY7 1462 aa30.86■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms