RNA–Protein interactions for RNA: ENST00000618500.4

SNCA-213, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,022 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-213ENST00000618500 NISCHQ9Y2I1 1504 aa12.33□□□□□ -0.44
SNCA-213ENST00000618500 CCDC180Q9P1Z9 1646 aa11.45□□□□□ -0.58
SNCA-213ENST00000618500 ABCC9O60706 1549 aa11.22□□□□□ -0.61
SNCA-213ENST00000618500 AEBP2Q6ZN18 517 aaPredicted RBP10.95□□□□□ -0.66
SNCA-213ENST00000618500 RB1CC1Q8TDY2 1594 aa10.86□□□□□ -0.67
SNCA-213ENST00000618500 NACADO15069 1562 aa10.76□□□□□ -0.69
SNCA-213ENST00000618500 MYO15BQ96JP2 1530 aa10.67□□□□□ -0.7
SNCA-213ENST00000618500 UNC13AQ9UPW8 1703 aa10.67□□□□□ -0.7
SNCA-213ENST00000618500 DNAJC5BQ9UF47 199 aa10.66□□□□□ -0.7
SNCA-213ENST00000618500 SHROOM4Q9ULL8 1493 aa10.62□□□□□ -0.71
SNCA-213ENST00000618500 BICRAQ9NZM4 1560 aa10.53□□□□□ -0.72
SNCA-213ENST00000618500 DCAF1Q9Y4B6 1507 aa10.39□□□□□ -0.75
SNCA-213ENST00000618500 CHIC1Q5VXU3 224 aa10.33□□□□□ -0.75
SNCA-213ENST00000618500 CC2D2AQ9P2K1 1620 aa10.31□□□□□ -0.76
SNCA-213ENST00000618500 EIF4G1Q04637 1599 aaKnown RBP10.25□□□□□ -0.77
SNCA-213ENST00000618500 CECR2Q9BXF3 1484 aa10.24□□□□□ -0.77
SNCA-213ENST00000618500 PABPN1Q86U42 306 aaKnown RBP eCLIP10.23□□□□□ -0.77
SNCA-213ENST00000618500 ZCCHC6Q5VYS8 1495 aaKnown RBP10.22□□□□□ -0.77
SNCA-213ENST00000618500 DNAJC5Q9H3Z4 198 aa10.12□□□□□ -0.79
SNCA-213ENST00000618500 CUX2O14529 1486 aa10.08□□□□□ -0.8
SNCA-213ENST00000618500 SCRIBQ14160 1630 aa10.07□□□□□ -0.8
SNCA-213ENST00000618500 DCAF8L2P0C7V8 631 aa9.92□□□□□ -0.82
SNCA-213ENST00000618500 HMGXB3Q12766 1538 aa9.86□□□□□ -0.83
SNCA-213ENST00000618500 NCAPD3P42695 1498 aa9.86□□□□□ -0.83
SNCA-213ENST00000618500 THOC2Q8NI27 1593 aaKnown RBP9.82□□□□□ -0.84
SNCA-213ENST00000618500 SMARCA2P51531 1590 aa9.78□□□□□ -0.84
SNCA-213ENST00000618500 PEG3Q9GZU2 1588 aa9.77□□□□□ -0.85
SNCA-213ENST00000618500 ERCC6Q03468 1493 aa9.75□□□□□ -0.85
SNCA-213ENST00000618500 LAMC3Q9Y6N6 1575 aa9.75□□□□□ -0.85
SNCA-213ENST00000618500 SMARCA4P51532 1647 aa9.73□□□□□ -0.85
SNCA-213ENST00000618500 ATAD2BQ9ULI0 1458 aa9.72□□□□□ -0.85
SNCA-213ENST00000618500 KIF21AQ7Z4S6 1674 aa9.65□□□□□ -0.86
SNCA-213ENST00000618500 BAZ1AQ9NRL2 1556 aaPredicted RBP9.63□□□□□ -0.87
SNCA-213ENST00000618500 WDR62O43379 1518 aa9.61□□□□□ -0.87
SNCA-213ENST00000618500 BAZ1BQ9UIG0 1483 aaKnown RBP9.58□□□□□ -0.88
SNCA-213ENST00000618500 NESP48681 1621 aa9.58□□□□□ -0.88
SNCA-213ENST00000618500 PDS5BQ9NTI5 1447 aa9.56□□□□□ -0.88
SNCA-213ENST00000618500 MRC2Q9UBG0 1479 aa9.54□□□□□ -0.88
SNCA-213ENST00000618500 SENP3Q9H4L4 574 aaPredicted RBP9.53□□□□□ -0.88
SNCA-213ENST00000618500 PRDM2Q13029 1718 aa9.5□□□□□ -0.89
SNCA-213ENST00000618500 CADPSQ9ULU8 1353 aa9.43□□□□□ -0.9
SNCA-213ENST00000618500 MROH2BQ7Z745 1585 aa9.41□□□□□ -0.9
SNCA-213ENST00000618500 CEP164Q9UPV0 1460 aa9.4□□□□□ -0.9
SNCA-213ENST00000618500 RIMBP3CA6NJZ7 1639 aa9.39□□□□□ -0.91
SNCA-213ENST00000618500 RIMBP3BA6NNM3 1639 aa9.39□□□□□ -0.91
SNCA-213ENST00000618500 RIMBP3Q9UFD9 1639 aa9.39□□□□□ -0.91
SNCA-213ENST00000618500 CFTRP13569 1480 aa9.35□□□□□ -0.91
SNCA-213ENST00000618500 FANCD2Q9BXW9 1451 aa9.33□□□□□ -0.92
SNCA-213ENST00000618500 WDR97A6NE52 1622 aa9.31□□□□□ -0.92
SNCA-213ENST00000618500 WIZO95785 1651 aa9.3□□□□□ -0.92
SNCA-213ENST00000618500 URB2Q14146 1524 aaKnown RBP9.3□□□□□ -0.92
SNCA-213ENST00000618500 TRIM41Q8WV44 630 aa9.29□□□□□ -0.92
SNCA-213ENST00000618500 TOP2AP11388 1531 aaKnown RBP9.29□□□□□ -0.92
SNCA-213ENST00000618500 IFT140Q96RY7 1462 aa9.28□□□□□ -0.92
SNCA-213ENST00000618500 ARHGEF11O15085 1522 aa9.27□□□□□ -0.92
SNCA-213ENST00000618500 OSCARQ8IYS5 282 aa9.27□□□□□ -0.93
SNCA-213ENST00000618500 PHF23Q9BUL5 403 aaPredicted RBP9.27□□□□□ -0.93
SNCA-213ENST00000618500 ABCC8Q09428 1581 aa9.24□□□□□ -0.93
SNCA-213ENST00000618500 EIF4G3O43432 1585 aaKnown RBP9.23□□□□□ -0.93
SNCA-213ENST00000618500 RSF1Q96T23 1441 aaPredicted RBP9.23□□□□□ -0.93
SNCA-213ENST00000618500 CHD1O14646 1710 aa9.23□□□□□ -0.93
SNCA-213ENST00000618500 POTEDQ86YR6 584 aa9.21□□□□□ -0.94
SNCA-213ENST00000618500 TARBP1Q13395 1621 aaKnown RBP9.2□□□□□ -0.94
SNCA-213ENST00000618500 DNMBPQ6XZF7 1577 aa9.2□□□□□ -0.94
SNCA-213ENST00000618500 CLASP1Q7Z460 1538 aa9.17□□□□□ -0.94
SNCA-213ENST00000618500 TOPBP1Q92547 1522 aa9.16□□□□□ -0.94
SNCA-213ENST00000618500 ARAP1Q96P48 1450 aa9.16□□□□□ -0.94
SNCA-213ENST00000618500 ZNF608Q9ULD9 1512 aaPredicted RBP9.13□□□□□ -0.95
SNCA-213ENST00000618500 SYNJ1O43426 1573 aa9.09□□□□□ -0.95
SNCA-213ENST00000618500 MAGI1Q96QZ7 1491 aaPredicted RBP9.06□□□□□ -0.96
SNCA-213ENST00000618500 PBRM1Q86U86 1689 aa9.04□□□□□ -0.96
SNCA-213ENST00000618500 CCDC88BA6NC98 1476 aa9.04□□□□□ -0.96
SNCA-213ENST00000618500 POLA1P09884 1462 aaPredicted RBP9.02□□□□□ -0.97
SNCA-213ENST00000618500 SHROOM2Q13796 1616 aa8.99□□□□□ -0.97
SNCA-213ENST00000618500 SYNJ2O15056 1496 aa8.98□□□□□ -0.97
SNCA-213ENST00000618500 ABCA5Q8WWZ7 1642 aa8.98□□□□□ -0.97
SNCA-213ENST00000618500 SNAPC4Q5SXM2 1469 aa8.97□□□□□ -0.97
SNCA-213ENST00000618500 GRIN2BQ13224 1484 aa8.96□□□□□ -0.97
SNCA-213ENST00000618500 AQRO60306 1485 aaKnown RBP eCLIP8.96□□□□□ -0.98
SNCA-213ENST00000618500 KIF13AQ9H1H9 1805 aa8.95□□□□□ -0.98
SNCA-213ENST00000618500 CYB5RLQ6IPT4 315 aa8.92□□□□□ -0.98
SNCA-213ENST00000618500 GAPVD1Q14C86 1478 aa8.91□□□□□ -0.98
SNCA-213ENST00000618500 FGD5Q6ZNL6 1462 aa8.9□□□□□ -0.98
SNCA-213ENST00000618500 ADAMTS12P58397 1594 aa8.9□□□□□ -0.98
SNCA-213ENST00000618500 SOGA1O94964 1423 aa8.9□□□□□ -0.98
SNCA-213ENST00000618500 ABCA10Q8WWZ4 1543 aa8.9□□□□□ -0.99
SNCA-213ENST00000618500 CUX1P39880 1505 aa8.89□□□□□ -0.99
SNCA-213ENST00000618500 RAD54L2Q9Y4B4 1467 aa8.88□□□□□ -0.99
SNCA-213ENST00000618500 NUP160Q12769 1436 aa8.87□□□□□ -0.99
SNCA-213ENST00000618500 FOXD1Q16676 465 aa8.87□□□□□ -0.99
SNCA-213ENST00000618500 CEP170Q5SW79 1584 aa8.87□□□□□ -0.99
SNCA-213ENST00000618500 TRHP20396 242 aaPredicted RBP8.86□□□□□ -0.99
SNCA-213ENST00000618500 MAPKBP1O60336 1514 aa8.86□□□□□ -0.99
SNCA-213ENST00000618500 BIVM-ERCC5R4GMW8 1640 aa8.85□□□□□ -0.99
SNCA-213ENST00000618500 GRIN2AQ12879 1464 aa8.84□□□□□ -0.99
SNCA-213ENST00000618500 ERICH3Q5RHP9 1530 aa8.82□□□□□ -1
SNCA-213ENST00000618500 DIP2BQ9P265 1576 aa8.81□□□□□ -1
SNCA-213ENST00000618500 ERCC6L2Q5T890 1561 aa8.8□□□□□ -1
SNCA-213ENST00000618500 TDRD9Q8NDG6 1382 aaKnown RBP8.8□□□□□ -1
SNCA-213ENST00000618500 RUSC2Q8N2Y8 1516 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 1099.3 ms