RNA–Protein interactions for RNA: ENST00000617564.1

COL4A2-210, Transcript of collagen type IV alpha 2 chain, humanhuman

Gene COL4A2, Length 868 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2-210ENST00000617564 NISCHQ9Y2I1 1504 aa30.43■■■□□ 2.46
COL4A2-210ENST00000617564 ABCC9O60706 1549 aa28.18■■■□□ 2.1
COL4A2-210ENST00000617564 CCDC180Q9P1Z9 1646 aa27.44■■□□□ 1.98
COL4A2-210ENST00000617564 DNAJC5BQ9UF47 199 aa27.37■■□□□ 1.97
COL4A2-210ENST00000617564 RB1CC1Q8TDY2 1594 aa26.34■■□□□ 1.81
COL4A2-210ENST00000617564 PABPN1Q86U42 306 aaKnown RBP eCLIP26.07■■□□□ 1.76
COL4A2-210ENST00000617564 NACADO15069 1562 aa25.96■■□□□ 1.75
COL4A2-210ENST00000617564 DNAJC5Q9H3Z4 198 aa25.94■■□□□ 1.74
COL4A2-210ENST00000617564 UNC13AQ9UPW8 1703 aa25.71■■□□□ 1.71
COL4A2-210ENST00000617564 MYO15BQ96JP2 1530 aa25.61■■□□□ 1.69
COL4A2-210ENST00000617564 DCAF8L2P0C7V8 631 aa25.6■■□□□ 1.69
COL4A2-210ENST00000617564 BICRAQ9NZM4 1560 aa25.58■■□□□ 1.69
COL4A2-210ENST00000617564 CECR2Q9BXF3 1484 aa25.5■■□□□ 1.67
COL4A2-210ENST00000617564 CC2D2AQ9P2K1 1620 aa25.39■■□□□ 1.66
COL4A2-210ENST00000617564 ZCCHC6Q5VYS8 1495 aaKnown RBP25.21■■□□□ 1.63
COL4A2-210ENST00000617564 DCAF1Q9Y4B6 1507 aa25.2■■□□□ 1.62
COL4A2-210ENST00000617564 SHROOM4Q9ULL8 1493 aa25.16■■□□□ 1.62
COL4A2-210ENST00000617564 EIF4G1Q04637 1599 aaKnown RBP25.07■■□□□ 1.6
COL4A2-210ENST00000617564 SCRIBQ14160 1630 aa24.9■■□□□ 1.58
COL4A2-210ENST00000617564 CUX2O14529 1486 aa24.72■■□□□ 1.55
COL4A2-210ENST00000617564 ERCC6Q03468 1493 aa24.43■■□□□ 1.5
COL4A2-210ENST00000617564 TRIM41Q8WV44 630 aa24.39■■□□□ 1.49
COL4A2-210ENST00000617564 AEBP2Q6ZN18 517 aaPredicted RBP24.22■■□□□ 1.47
COL4A2-210ENST00000617564 NCAPD3P42695 1498 aa23.95■■□□□ 1.42
COL4A2-210ENST00000617564 NESP48681 1621 aa23.89■■□□□ 1.42
COL4A2-210ENST00000617564 THOC2Q8NI27 1593 aaKnown RBP23.86■■□□□ 1.41
COL4A2-210ENST00000617564 ATAD2BQ9ULI0 1458 aa23.84■■□□□ 1.41
COL4A2-210ENST00000617564 SMARCA2P51531 1590 aa23.8■■□□□ 1.4
COL4A2-210ENST00000617564 HMGXB3Q12766 1538 aa23.79■■□□□ 1.4
COL4A2-210ENST00000617564 SMARCA4P51532 1647 aa23.77■■□□□ 1.4
COL4A2-210ENST00000617564 BAZ1AQ9NRL2 1556 aaPredicted RBP23.66■■□□□ 1.38
COL4A2-210ENST00000617564 BAZ1BQ9UIG0 1483 aaKnown RBP23.6■■□□□ 1.37
COL4A2-210ENST00000617564 PEG3Q9GZU2 1588 aa23.59■■□□□ 1.37
COL4A2-210ENST00000617564 LAMC3Q9Y6N6 1575 aa23.55■■□□□ 1.36
COL4A2-210ENST00000617564 KIF21AQ7Z4S6 1674 aa23.54■■□□□ 1.36
COL4A2-210ENST00000617564 PDS5BQ9NTI5 1447 aa23.48■■□□□ 1.35
COL4A2-210ENST00000617564 OSCARQ8IYS5 282 aa23.44■■□□□ 1.34
COL4A2-210ENST00000617564 MROH2BQ7Z745 1585 aa23.42■■□□□ 1.34
COL4A2-210ENST00000617564 MRC2Q9UBG0 1479 aa23.32■■□□□ 1.32
COL4A2-210ENST00000617564 WDR62O43379 1518 aa23.28■■□□□ 1.32
COL4A2-210ENST00000617564 RIMBP3CA6NJZ7 1639 aa23.22■■□□□ 1.31
COL4A2-210ENST00000617564 RIMBP3BA6NNM3 1639 aa23.22■■□□□ 1.31
COL4A2-210ENST00000617564 RIMBP3Q9UFD9 1639 aa23.22■■□□□ 1.31
COL4A2-210ENST00000617564 CADPSQ9ULU8 1353 aa23.2■■□□□ 1.3
COL4A2-210ENST00000617564 WIZO95785 1651 aa23.1■■□□□ 1.29
COL4A2-210ENST00000617564 TRHP20396 242 aaPredicted RBP23.09■■□□□ 1.29
COL4A2-210ENST00000617564 ARHGEF11O15085 1522 aa23.04■■□□□ 1.28
COL4A2-210ENST00000617564 CEP164Q9UPV0 1460 aa23.02■■□□□ 1.28
COL4A2-210ENST00000617564 CYB5RLQ6IPT4 315 aa22.97■■□□□ 1.27
COL4A2-210ENST00000617564 FANCD2Q9BXW9 1451 aa22.93■■□□□ 1.26
COL4A2-210ENST00000617564 CFTRP13569 1480 aa22.92■■□□□ 1.26
COL4A2-210ENST00000617564 RSF1Q96T23 1441 aaPredicted RBP22.88■■□□□ 1.25
COL4A2-210ENST00000617564 TOP2AP11388 1531 aaKnown RBP22.87■■□□□ 1.25
COL4A2-210ENST00000617564 CHIC1Q5VXU3 224 aa22.84■■□□□ 1.25
COL4A2-210ENST00000617564 URB2Q14146 1524 aaKnown RBP22.76■■□□□ 1.23
COL4A2-210ENST00000617564 ARAP1Q96P48 1450 aa22.75■■□□□ 1.23
COL4A2-210ENST00000617564 PRDM2Q13029 1718 aa22.68■■□□□ 1.22
COL4A2-210ENST00000617564 ZNF608Q9ULD9 1512 aaPredicted RBP22.67■■□□□ 1.22
COL4A2-210ENST00000617564 IFT140Q96RY7 1462 aa22.6■■□□□ 1.21
COL4A2-210ENST00000617564 CCDC88BA6NC98 1476 aa22.56■■□□□ 1.2
COL4A2-210ENST00000617564 CHD1O14646 1710 aa22.51■■□□□ 1.19
COL4A2-210ENST00000617564 TOPBP1Q92547 1522 aa22.48■■□□□ 1.19
COL4A2-210ENST00000617564 EIF4G3O43432 1585 aaKnown RBP22.48■■□□□ 1.19
COL4A2-210ENST00000617564 ABCC8Q09428 1581 aa22.47■■□□□ 1.19
COL4A2-210ENST00000617564 FBLN2P98095 1184 aa22.44■■□□□ 1.18
COL4A2-210ENST00000617564 DNMBPQ6XZF7 1577 aa22.41■■□□□ 1.18
COL4A2-210ENST00000617564 ILDR1Q86SU0 546 aaPredicted RBP22.36■■□□□ 1.17
COL4A2-210ENST00000617564 AQRO60306 1485 aaKnown RBP eCLIP22.33■■□□□ 1.16
COL4A2-210ENST00000617564 TARBP1Q13395 1621 aaKnown RBP22.29■■□□□ 1.16
COL4A2-210ENST00000617564 POLA1P09884 1462 aaPredicted RBP22.24■■□□□ 1.15
COL4A2-210ENST00000617564 CLASP1Q7Z460 1538 aa22.22■■□□□ 1.15
COL4A2-210ENST00000617564 WDR97A6NE52 1622 aa22.15■■□□□ 1.14
COL4A2-210ENST00000617564 SYNJ1O43426 1573 aa22.13■■□□□ 1.13
COL4A2-210ENST00000617564 RAD54L2Q9Y4B4 1467 aa22.12■■□□□ 1.13
COL4A2-210ENST00000617564 SOGA1O94964 1423 aa22.11■■□□□ 1.13
COL4A2-210ENST00000617564 GAPVD1Q14C86 1478 aa22.09■■□□□ 1.13
COL4A2-210ENST00000617564 CHMP7Q8WUX9 453 aaPredicted RBP22.09■■□□□ 1.13
COL4A2-210ENST00000617564 SNAPC4Q5SXM2 1469 aa22.08■■□□□ 1.12
COL4A2-210ENST00000617564 FGD5Q6ZNL6 1462 aa22.07■■□□□ 1.12
COL4A2-210ENST00000617564 TDRD9Q8NDG6 1382 aaKnown RBP22.06■■□□□ 1.12
COL4A2-210ENST00000617564 CUX1P39880 1505 aa22.03■■□□□ 1.12
COL4A2-210ENST00000617564 MAGI1Q96QZ7 1491 aaPredicted RBP22.03■■□□□ 1.12
COL4A2-210ENST00000617564 GRIN2BQ13224 1484 aa21.99■■□□□ 1.11
COL4A2-210ENST00000617564 SYNJ2O15056 1496 aa21.93■■□□□ 1.1
COL4A2-210ENST00000617564 KDM4FA0A1W2PPD8 638 aa21.91■■□□□ 1.1
COL4A2-210ENST00000617564 KIF13AQ9H1H9 1805 aa21.87■■□□□ 1.09
COL4A2-210ENST00000617564 PBRM1Q86U86 1689 aa21.86■■□□□ 1.09
COL4A2-210ENST00000617564 ABCA10Q8WWZ4 1543 aa21.85■■□□□ 1.09
COL4A2-210ENST00000617564 ABCA5Q8WWZ7 1642 aa21.83■■□□□ 1.08
COL4A2-210ENST00000617564 ERCC6L2Q5T890 1561 aa21.8■■□□□ 1.08
COL4A2-210ENST00000617564 WRNQ14191 1432 aaPredicted RBP eCLIP21.71■■□□□ 1.07
COL4A2-210ENST00000617564 FAM69CQ0P6D2 419 aa21.7■■□□□ 1.06
COL4A2-210ENST00000617564 GRIN2AQ12879 1464 aa21.69■■□□□ 1.06
COL4A2-210ENST00000617564 ADAMTS12P58397 1594 aa21.68■■□□□ 1.06
COL4A2-210ENST00000617564 CEP170Q5SW79 1584 aa21.66■■□□□ 1.06
COL4A2-210ENST00000617564 KDM6BO15054 1643 aa21.66■■□□□ 1.06
COL4A2-210ENST00000617564 BIVM-ERCC5R4GMW8 1640 aa21.66■■□□□ 1.06
COL4A2-210ENST00000617564 TOP2BQ02880 1626 aa21.65■■□□□ 1.06
COL4A2-210ENST00000617564 NUP160Q12769 1436 aa21.64■■□□□ 1.06
COL4A2-210ENST00000617564 SUPT5HO00267 1087 aaKnown RBP21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms