RNA–Protein interactions for RNA: ENST00000617456.1

GPC6-202, Transcript of glypican 6, humanhuman

TSL 3 BASIC

Gene GPC6, Length 792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-202ENST00000617456 NISCHQ9Y2I1 1504 aa21.45■■□□□ 1.02
GPC6-202ENST00000617456 ABCC9O60706 1549 aa19.68■□□□□ 0.74
GPC6-202ENST00000617456 CCDC180Q9P1Z9 1646 aa19.29■□□□□ 0.68
GPC6-202ENST00000617456 DNAJC5BQ9UF47 199 aa18.7■□□□□ 0.58
GPC6-202ENST00000617456 RB1CC1Q8TDY2 1594 aa18.54■□□□□ 0.56
GPC6-202ENST00000617456 DCAF8L2P0C7V8 631 aa18.38■□□□□ 0.53
GPC6-202ENST00000617456 NACADO15069 1562 aa18.34■□□□□ 0.53
GPC6-202ENST00000617456 PABPN1Q86U42 306 aaKnown RBP eCLIP18.33■□□□□ 0.52
GPC6-202ENST00000617456 UNC13AQ9UPW8 1703 aa18.08■□□□□ 0.48
GPC6-202ENST00000617456 BICRAQ9NZM4 1560 aa18■□□□□ 0.47
GPC6-202ENST00000617456 MYO15BQ96JP2 1530 aa17.95■□□□□ 0.46
GPC6-202ENST00000617456 CECR2Q9BXF3 1484 aa17.73■□□□□ 0.43
GPC6-202ENST00000617456 ZCCHC6Q5VYS8 1495 aaKnown RBP17.71■□□□□ 0.43
GPC6-202ENST00000617456 CC2D2AQ9P2K1 1620 aa17.7■□□□□ 0.42
GPC6-202ENST00000617456 SHROOM4Q9ULL8 1493 aa17.68■□□□□ 0.42
GPC6-202ENST00000617456 SCRIBQ14160 1630 aa17.67■□□□□ 0.42
GPC6-202ENST00000617456 DCAF1Q9Y4B6 1507 aa17.64■□□□□ 0.41
GPC6-202ENST00000617456 EIF4G1Q04637 1599 aaKnown RBP17.6■□□□□ 0.41
GPC6-202ENST00000617456 DNAJC5Q9H3Z4 198 aa17.33■□□□□ 0.36
GPC6-202ENST00000617456 ERCC6Q03468 1493 aa17.01■□□□□ 0.31
GPC6-202ENST00000617456 CUX2O14529 1486 aa16.99■□□□□ 0.31
GPC6-202ENST00000617456 NCAPD3P42695 1498 aa16.94■□□□□ 0.3
GPC6-202ENST00000617456 ATAD2BQ9ULI0 1458 aa16.88■□□□□ 0.29
GPC6-202ENST00000617456 NESP48681 1621 aa16.82■□□□□ 0.28
GPC6-202ENST00000617456 CHIC1Q5VXU3 224 aa16.81■□□□□ 0.28
GPC6-202ENST00000617456 SMARCA2P51531 1590 aa16.8■□□□□ 0.28
GPC6-202ENST00000617456 SMARCA4P51532 1647 aa16.78■□□□□ 0.28
GPC6-202ENST00000617456 HMGXB3Q12766 1538 aa16.77■□□□□ 0.28
GPC6-202ENST00000617456 BAZ1BQ9UIG0 1483 aaKnown RBP16.72■□□□□ 0.27
GPC6-202ENST00000617456 BAZ1AQ9NRL2 1556 aaPredicted RBP16.66■□□□□ 0.26
GPC6-202ENST00000617456 THOC2Q8NI27 1593 aaKnown RBP16.63■□□□□ 0.25
GPC6-202ENST00000617456 LAMC3Q9Y6N6 1575 aa16.59■□□□□ 0.25
GPC6-202ENST00000617456 PEG3Q9GZU2 1588 aa16.57■□□□□ 0.24
GPC6-202ENST00000617456 MROH2BQ7Z745 1585 aa16.55■□□□□ 0.24
GPC6-202ENST00000617456 PDS5BQ9NTI5 1447 aa16.55■□□□□ 0.24
GPC6-202ENST00000617456 TRIM41Q8WV44 630 aa16.55■□□□□ 0.24
GPC6-202ENST00000617456 KIF21AQ7Z4S6 1674 aa16.53■□□□□ 0.24
GPC6-202ENST00000617456 AEBP2Q6ZN18 517 aaPredicted RBP16.49■□□□□ 0.23
GPC6-202ENST00000617456 CADPSQ9ULU8 1353 aa16.45■□□□□ 0.22
GPC6-202ENST00000617456 MRC2Q9UBG0 1479 aa16.42■□□□□ 0.22
GPC6-202ENST00000617456 WDR62O43379 1518 aa16.35■□□□□ 0.21
GPC6-202ENST00000617456 WIZO95785 1651 aa16.33■□□□□ 0.2
GPC6-202ENST00000617456 CEP164Q9UPV0 1460 aa16.31■□□□□ 0.2
GPC6-202ENST00000617456 FANCD2Q9BXW9 1451 aa16.28■□□□□ 0.2
GPC6-202ENST00000617456 OSCARQ8IYS5 282 aa16.24■□□□□ 0.19
GPC6-202ENST00000617456 CFTRP13569 1480 aa16.19■□□□□ 0.18
GPC6-202ENST00000617456 URB2Q14146 1524 aaKnown RBP16.14■□□□□ 0.18
GPC6-202ENST00000617456 RSF1Q96T23 1441 aaPredicted RBP16.12■□□□□ 0.17
GPC6-202ENST00000617456 TOP2AP11388 1531 aaKnown RBP16.09■□□□□ 0.17
GPC6-202ENST00000617456 RIMBP3CA6NJZ7 1639 aa16.01■□□□□ 0.15
GPC6-202ENST00000617456 RIMBP3BA6NNM3 1639 aa16.01■□□□□ 0.15
GPC6-202ENST00000617456 RIMBP3Q9UFD9 1639 aa16.01■□□□□ 0.15
GPC6-202ENST00000617456 ZNF608Q9ULD9 1512 aaPredicted RBP16.01■□□□□ 0.15
GPC6-202ENST00000617456 IFT140Q96RY7 1462 aa15.99■□□□□ 0.15
GPC6-202ENST00000617456 CCDC88BA6NC98 1476 aa15.95■□□□□ 0.14
GPC6-202ENST00000617456 ARHGEF11O15085 1522 aa15.94■□□□□ 0.14
GPC6-202ENST00000617456 PRDM2Q13029 1718 aa15.93■□□□□ 0.14
GPC6-202ENST00000617456 TOPBP1Q92547 1522 aa15.93■□□□□ 0.14
GPC6-202ENST00000617456 CYB5RLQ6IPT4 315 aa15.92■□□□□ 0.14
GPC6-202ENST00000617456 FBLN2P98095 1184 aa15.86■□□□□ 0.13
GPC6-202ENST00000617456 EIF4G3O43432 1585 aaKnown RBP15.86■□□□□ 0.13
GPC6-202ENST00000617456 TRHP20396 242 aaPredicted RBP15.85■□□□□ 0.13
GPC6-202ENST00000617456 AQRO60306 1485 aaKnown RBP eCLIP15.84■□□□□ 0.13
GPC6-202ENST00000617456 ABCC8Q09428 1581 aa15.84■□□□□ 0.13
GPC6-202ENST00000617456 DNMBPQ6XZF7 1577 aa15.82■□□□□ 0.12
GPC6-202ENST00000617456 CHD1O14646 1710 aa15.8■□□□□ 0.12
GPC6-202ENST00000617456 ARAP1Q96P48 1450 aa15.78■□□□□ 0.12
GPC6-202ENST00000617456 TARBP1Q13395 1621 aaKnown RBP15.76■□□□□ 0.11
GPC6-202ENST00000617456 POLA1P09884 1462 aaPredicted RBP15.74■□□□□ 0.11
GPC6-202ENST00000617456 RAD54L2Q9Y4B4 1467 aa15.73■□□□□ 0.11
GPC6-202ENST00000617456 TDRD9Q8NDG6 1382 aaKnown RBP15.73■□□□□ 0.11
GPC6-202ENST00000617456 SOGA1O94964 1423 aa15.7■□□□□ 0.1
GPC6-202ENST00000617456 CHMP7Q8WUX9 453 aaPredicted RBP15.67■□□□□ 0.1
GPC6-202ENST00000617456 SNAPC4Q5SXM2 1469 aa15.66■□□□□ 0.1
GPC6-202ENST00000617456 FGD5Q6ZNL6 1462 aa15.63■□□□□ 0.09
GPC6-202ENST00000617456 CLASP1Q7Z460 1538 aa15.6■□□□□ 0.09
GPC6-202ENST00000617456 SYNJ1O43426 1573 aa15.58■□□□□ 0.09
GPC6-202ENST00000617456 GRIN2BQ13224 1484 aa15.57■□□□□ 0.08
GPC6-202ENST00000617456 MAGI1Q96QZ7 1491 aaPredicted RBP15.57■□□□□ 0.08
GPC6-202ENST00000617456 CUX1P39880 1505 aa15.56■□□□□ 0.08
GPC6-202ENST00000617456 WDR97A6NE52 1622 aa15.54■□□□□ 0.08
GPC6-202ENST00000617456 SYNJ2O15056 1496 aa15.53■□□□□ 0.08
GPC6-202ENST00000617456 GAPVD1Q14C86 1478 aa15.5■□□□□ 0.07
GPC6-202ENST00000617456 PBRM1Q86U86 1689 aa15.44■□□□□ 0.06
GPC6-202ENST00000617456 ABCA10Q8WWZ4 1543 aa15.41■□□□□ 0.06
GPC6-202ENST00000617456 ERCC6L2Q5T890 1561 aa15.38■□□□□ 0.05
GPC6-202ENST00000617456 ABCA5Q8WWZ7 1642 aa15.38■□□□□ 0.05
GPC6-202ENST00000617456 GRIN2AQ12879 1464 aa15.36■□□□□ 0.05
GPC6-202ENST00000617456 SUPT5HO00267 1087 aaKnown RBP15.34■□□□□ 0.05
GPC6-202ENST00000617456 WRNQ14191 1432 aaPredicted RBP eCLIP15.33■□□□□ 0.04
GPC6-202ENST00000617456 CEP170Q5SW79 1584 aa15.32■□□□□ 0.04
GPC6-202ENST00000617456 NUP160Q12769 1436 aa15.31■□□□□ 0.04
GPC6-202ENST00000617456 ADAMTS12P58397 1594 aa15.31■□□□□ 0.04
GPC6-202ENST00000617456 FHAD1B1AJZ9 1412 aa15.28■□□□□ 0.04
GPC6-202ENST00000617456 SHROOM2Q13796 1616 aa15.23■□□□□ 0.03
GPC6-202ENST00000617456 PRG4Q92954 1404 aaPredicted RBP15.23■□□□□ 0.03
GPC6-202ENST00000617456 JPH4Q96JJ6 628 aa15.21■□□□□ 0.03
GPC6-202ENST00000617456 TOP2BQ02880 1626 aa15.21■□□□□ 0.02
GPC6-202ENST00000617456 ERICH3Q5RHP9 1530 aa15.19■□□□□ 0.02
GPC6-202ENST00000617456 BIVM-ERCC5R4GMW8 1640 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms