RNA–Protein interactions for RNA: ENST00000616230.1

PCDHGC3-203, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 2

Gene PCDHGC3, Length 937 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-203ENST00000616230 NISCHQ9Y2I1 1504 aa30.42■■■□□ 2.46
PCDHGC3-203ENST00000616230 CCDC180Q9P1Z9 1646 aa27.22■■□□□ 1.95
PCDHGC3-203ENST00000616230 ABCC9O60706 1549 aa26.8■■□□□ 1.88
PCDHGC3-203ENST00000616230 RB1CC1Q8TDY2 1594 aa25.7■■□□□ 1.71
PCDHGC3-203ENST00000616230 NACADO15069 1562 aa25.61■■□□□ 1.69
PCDHGC3-203ENST00000616230 DCAF8L2P0C7V8 631 aa25.41■■□□□ 1.66
PCDHGC3-203ENST00000616230 MYO15BQ96JP2 1530 aa25.38■■□□□ 1.65
PCDHGC3-203ENST00000616230 ZCCHC6Q5VYS8 1495 aaKnown RBP25.29■■□□□ 1.64
PCDHGC3-203ENST00000616230 UNC13AQ9UPW8 1703 aa25.2■■□□□ 1.63
PCDHGC3-203ENST00000616230 DCAF1Q9Y4B6 1507 aa25.17■■□□□ 1.62
PCDHGC3-203ENST00000616230 BICRAQ9NZM4 1560 aa24.96■■□□□ 1.59
PCDHGC3-203ENST00000616230 PABPN1Q86U42 306 aaKnown RBP eCLIP24.95■■□□□ 1.58
PCDHGC3-203ENST00000616230 DNAJC5BQ9UF47 199 aa24.82■■□□□ 1.56
PCDHGC3-203ENST00000616230 SCRIBQ14160 1630 aa24.77■■□□□ 1.56
PCDHGC3-203ENST00000616230 SHROOM4Q9ULL8 1493 aa24.66■■□□□ 1.54
PCDHGC3-203ENST00000616230 EIF4G1Q04637 1599 aaKnown RBP24.31■■□□□ 1.48
PCDHGC3-203ENST00000616230 CC2D2AQ9P2K1 1620 aa24.28■■□□□ 1.48
PCDHGC3-203ENST00000616230 CECR2Q9BXF3 1484 aa24.12■■□□□ 1.45
PCDHGC3-203ENST00000616230 SMARCA4P51532 1647 aa23.69■■□□□ 1.38
PCDHGC3-203ENST00000616230 AEBP2Q6ZN18 517 aaPredicted RBP23.64■■□□□ 1.37
PCDHGC3-203ENST00000616230 NCAPD3P42695 1498 aa23.61■■□□□ 1.37
PCDHGC3-203ENST00000616230 ATAD2BQ9ULI0 1458 aa23.59■■□□□ 1.37
PCDHGC3-203ENST00000616230 BAZ1AQ9NRL2 1556 aaPredicted RBP23.59■■□□□ 1.37
PCDHGC3-203ENST00000616230 SMARCA2P51531 1590 aa23.56■■□□□ 1.36
PCDHGC3-203ENST00000616230 HMGXB3Q12766 1538 aa23.51■■□□□ 1.35
PCDHGC3-203ENST00000616230 PEG3Q9GZU2 1588 aa23.46■■□□□ 1.35
PCDHGC3-203ENST00000616230 MROH2BQ7Z745 1585 aa23.44■■□□□ 1.34
PCDHGC3-203ENST00000616230 BAZ1BQ9UIG0 1483 aaKnown RBP23.37■■□□□ 1.33
PCDHGC3-203ENST00000616230 WIZO95785 1651 aa23.19■■□□□ 1.3
PCDHGC3-203ENST00000616230 NESP48681 1621 aa23.13■■□□□ 1.29
PCDHGC3-203ENST00000616230 ERCC6Q03468 1493 aa23.11■■□□□ 1.29
PCDHGC3-203ENST00000616230 LAMC3Q9Y6N6 1575 aa23.06■■□□□ 1.28
PCDHGC3-203ENST00000616230 RSF1Q96T23 1441 aaPredicted RBP23.04■■□□□ 1.28
PCDHGC3-203ENST00000616230 CUX2O14529 1486 aa23.01■■□□□ 1.27
PCDHGC3-203ENST00000616230 TOP2AP11388 1531 aaKnown RBP22.92■■□□□ 1.26
PCDHGC3-203ENST00000616230 KIF21AQ7Z4S6 1674 aa22.91■■□□□ 1.26
PCDHGC3-203ENST00000616230 THOC2Q8NI27 1593 aaKnown RBP22.89■■□□□ 1.26
PCDHGC3-203ENST00000616230 CADPSQ9ULU8 1353 aa22.89■■□□□ 1.25
PCDHGC3-203ENST00000616230 PDS5BQ9NTI5 1447 aa22.87■■□□□ 1.25
PCDHGC3-203ENST00000616230 CHIC1Q5VXU3 224 aa22.74■■□□□ 1.23
PCDHGC3-203ENST00000616230 CFTRP13569 1480 aa22.73■■□□□ 1.23
PCDHGC3-203ENST00000616230 MRC2Q9UBG0 1479 aa22.66■■□□□ 1.22
PCDHGC3-203ENST00000616230 CEP164Q9UPV0 1460 aa22.65■■□□□ 1.22
PCDHGC3-203ENST00000616230 FANCD2Q9BXW9 1451 aa22.64■■□□□ 1.21
PCDHGC3-203ENST00000616230 WDR62O43379 1518 aa22.63■■□□□ 1.21
PCDHGC3-203ENST00000616230 PRDM2Q13029 1718 aa22.63■■□□□ 1.21
PCDHGC3-203ENST00000616230 CCDC88BA6NC98 1476 aa22.62■■□□□ 1.21
PCDHGC3-203ENST00000616230 DNAJC5Q9H3Z4 198 aa22.55■■□□□ 1.2
PCDHGC3-203ENST00000616230 URB2Q14146 1524 aaKnown RBP22.45■■□□□ 1.18
PCDHGC3-203ENST00000616230 TOPBP1Q92547 1522 aa22.26■■□□□ 1.15
PCDHGC3-203ENST00000616230 ABCC8Q09428 1581 aa22.24■■□□□ 1.15
PCDHGC3-203ENST00000616230 DNMBPQ6XZF7 1577 aa22.23■■□□□ 1.15
PCDHGC3-203ENST00000616230 SUPT5HO00267 1087 aaKnown RBP22.19■■□□□ 1.14
PCDHGC3-203ENST00000616230 IFT140Q96RY7 1462 aa22.17■■□□□ 1.14
PCDHGC3-203ENST00000616230 ZNF608Q9ULD9 1512 aaPredicted RBP22.11■■□□□ 1.13
PCDHGC3-203ENST00000616230 TARBP1Q13395 1621 aaKnown RBP22.08■■□□□ 1.13
PCDHGC3-203ENST00000616230 POLA1P09884 1462 aaPredicted RBP22.06■■□□□ 1.12
PCDHGC3-203ENST00000616230 EIF4G3O43432 1585 aaKnown RBP22.05■■□□□ 1.12
PCDHGC3-203ENST00000616230 CUX1P39880 1505 aa22■■□□□ 1.11
PCDHGC3-203ENST00000616230 FGD5Q6ZNL6 1462 aa21.96■■□□□ 1.11
PCDHGC3-203ENST00000616230 RAD54L2Q9Y4B4 1467 aa21.94■■□□□ 1.1
PCDHGC3-203ENST00000616230 AQRO60306 1485 aaKnown RBP eCLIP21.93■■□□□ 1.1
PCDHGC3-203ENST00000616230 SOGA1O94964 1423 aa21.93■■□□□ 1.1
PCDHGC3-203ENST00000616230 OSCARQ8IYS5 282 aa21.93■■□□□ 1.1
PCDHGC3-203ENST00000616230 WDR97A6NE52 1622 aa21.9■■□□□ 1.1
PCDHGC3-203ENST00000616230 CHD1O14646 1710 aa21.84■■□□□ 1.09
PCDHGC3-203ENST00000616230 TDRD9Q8NDG6 1382 aaKnown RBP21.82■■□□□ 1.08
PCDHGC3-203ENST00000616230 BIVM-ERCC5R4GMW8 1640 aa21.79■■□□□ 1.08
PCDHGC3-203ENST00000616230 TOP2BQ02880 1626 aa21.76■■□□□ 1.07
PCDHGC3-203ENST00000616230 SNAPC4Q5SXM2 1469 aa21.74■■□□□ 1.07
PCDHGC3-203ENST00000616230 PBRM1Q86U86 1689 aa21.74■■□□□ 1.07
PCDHGC3-203ENST00000616230 ABCA10Q8WWZ4 1543 aa21.74■■□□□ 1.07
PCDHGC3-203ENST00000616230 SYNJ1O43426 1573 aa21.74■■□□□ 1.07
PCDHGC3-203ENST00000616230 WRNQ14191 1432 aaPredicted RBP eCLIP21.72■■□□□ 1.07
PCDHGC3-203ENST00000616230 GRIN2BQ13224 1484 aa21.72■■□□□ 1.07
PCDHGC3-203ENST00000616230 ABCA5Q8WWZ7 1642 aa21.72■■□□□ 1.07
PCDHGC3-203ENST00000616230 MAGI1Q96QZ7 1491 aaPredicted RBP21.71■■□□□ 1.07
PCDHGC3-203ENST00000616230 RIMBP3CA6NJZ7 1639 aa21.7■■□□□ 1.06
PCDHGC3-203ENST00000616230 RIMBP3BA6NNM3 1639 aa21.7■■□□□ 1.06
PCDHGC3-203ENST00000616230 RIMBP3Q9UFD9 1639 aa21.7■■□□□ 1.06
PCDHGC3-203ENST00000616230 GAPVD1Q14C86 1478 aa21.69■■□□□ 1.06
PCDHGC3-203ENST00000616230 TRIM41Q8WV44 630 aa21.67■■□□□ 1.06
PCDHGC3-203ENST00000616230 FBLN2P98095 1184 aa21.66■■□□□ 1.06
PCDHGC3-203ENST00000616230 ARHGEF11O15085 1522 aa21.65■■□□□ 1.06
PCDHGC3-203ENST00000616230 SYNJ2O15056 1496 aa21.62■■□□□ 1.05
PCDHGC3-203ENST00000616230 CHMP7Q8WUX9 453 aaPredicted RBP21.58■■□□□ 1.05
PCDHGC3-203ENST00000616230 CLASP1Q7Z460 1538 aa21.57■■□□□ 1.04
PCDHGC3-203ENST00000616230 ADAMTS12P58397 1594 aa21.52■■□□□ 1.04
PCDHGC3-203ENST00000616230 ERICH3Q5RHP9 1530 aa21.49■■□□□ 1.03
PCDHGC3-203ENST00000616230 GRIN2AQ12879 1464 aa21.45■■□□□ 1.03
PCDHGC3-203ENST00000616230 ARAP1Q96P48 1450 aa21.45■■□□□ 1.03
PCDHGC3-203ENST00000616230 FHAD1B1AJZ9 1412 aa21.42■■□□□ 1.02
PCDHGC3-203ENST00000616230 CYB5RLQ6IPT4 315 aa21.39■■□□□ 1.01
PCDHGC3-203ENST00000616230 CEP170Q5SW79 1584 aa21.39■■□□□ 1.01
PCDHGC3-203ENST00000616230 NUP160Q12769 1436 aa21.38■■□□□ 1.01
PCDHGC3-203ENST00000616230 SHROOM2Q13796 1616 aa21.29■■□□□ 1
PCDHGC3-203ENST00000616230 KIF27Q86VH2 1401 aa21.29■■□□□ 1
PCDHGC3-203ENST00000616230 CUL7Q14999 1698 aa21.26■□□□□ 0.99
PCDHGC3-203ENST00000616230 ERCC6L2Q5T890 1561 aa21.25■□□□□ 0.99
PCDHGC3-203ENST00000616230 IGF1RP08069 1367 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 321.5 ms