RNA–Protein interactions for RNA: ENST00000612497.1

SSX3-204, Transcript of SSX family member 3, humanhuman

TSL 5 BASIC

Gene SSX3, Length 1,030 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3-204ENST00000612497 NISCHQ9Y2I1 1504 aa26.51■■□□□ 1.83
SSX3-204ENST00000612497 ABCC9O60706 1549 aa24.7■■□□□ 1.54
SSX3-204ENST00000612497 CCDC180Q9P1Z9 1646 aa24.05■■□□□ 1.44
SSX3-204ENST00000612497 DNAJC5BQ9UF47 199 aa23.72■■□□□ 1.39
SSX3-204ENST00000612497 RB1CC1Q8TDY2 1594 aa23.22■■□□□ 1.31
SSX3-204ENST00000612497 PABPN1Q86U42 306 aaKnown RBP eCLIP22.93■■□□□ 1.26
SSX3-204ENST00000612497 NACADO15069 1562 aa22.89■■□□□ 1.26
SSX3-204ENST00000612497 DCAF8L2P0C7V8 631 aa22.77■■□□□ 1.24
SSX3-204ENST00000612497 UNC13AQ9UPW8 1703 aa22.71■■□□□ 1.23
SSX3-204ENST00000612497 BICRAQ9NZM4 1560 aa22.54■■□□□ 1.2
SSX3-204ENST00000612497 MYO15BQ96JP2 1530 aa22.33■■□□□ 1.17
SSX3-204ENST00000612497 CECR2Q9BXF3 1484 aa22.3■■□□□ 1.16
SSX3-204ENST00000612497 CC2D2AQ9P2K1 1620 aa22.27■■□□□ 1.16
SSX3-204ENST00000612497 DNAJC5Q9H3Z4 198 aa22.23■■□□□ 1.15
SSX3-204ENST00000612497 SHROOM4Q9ULL8 1493 aa22.14■■□□□ 1.13
SSX3-204ENST00000612497 EIF4G1Q04637 1599 aaKnown RBP22.05■■□□□ 1.12
SSX3-204ENST00000612497 SCRIBQ14160 1630 aa21.92■■□□□ 1.1
SSX3-204ENST00000612497 DCAF1Q9Y4B6 1507 aa21.82■■□□□ 1.08
SSX3-204ENST00000612497 ZCCHC6Q5VYS8 1495 aaKnown RBP21.82■■□□□ 1.08
SSX3-204ENST00000612497 AEBP2Q6ZN18 517 aaPredicted RBP21.55■■□□□ 1.04
SSX3-204ENST00000612497 CUX2O14529 1486 aa21.51■■□□□ 1.03
SSX3-204ENST00000612497 ERCC6Q03468 1493 aa21.39■■□□□ 1.01
SSX3-204ENST00000612497 NCAPD3P42695 1498 aa21.13■□□□□ 0.97
SSX3-204ENST00000612497 TRIM41Q8WV44 630 aa21.06■□□□□ 0.96
SSX3-204ENST00000612497 NESP48681 1621 aa21.04■□□□□ 0.96
SSX3-204ENST00000612497 ATAD2BQ9ULI0 1458 aa20.99■□□□□ 0.95
SSX3-204ENST00000612497 HMGXB3Q12766 1538 aa20.91■□□□□ 0.94
SSX3-204ENST00000612497 THOC2Q8NI27 1593 aaKnown RBP20.91■□□□□ 0.94
SSX3-204ENST00000612497 SMARCA2P51531 1590 aa20.9■□□□□ 0.94
SSX3-204ENST00000612497 SMARCA4P51532 1647 aa20.82■□□□□ 0.92
SSX3-204ENST00000612497 BAZ1BQ9UIG0 1483 aaKnown RBP20.78■□□□□ 0.92
SSX3-204ENST00000612497 LAMC3Q9Y6N6 1575 aa20.77■□□□□ 0.92
SSX3-204ENST00000612497 KIF21AQ7Z4S6 1674 aa20.75■□□□□ 0.91
SSX3-204ENST00000612497 PDS5BQ9NTI5 1447 aa20.69■□□□□ 0.9
SSX3-204ENST00000612497 BAZ1AQ9NRL2 1556 aaPredicted RBP20.62■□□□□ 0.89
SSX3-204ENST00000612497 PEG3Q9GZU2 1588 aa20.59■□□□□ 0.89
SSX3-204ENST00000612497 MRC2Q9UBG0 1479 aa20.54■□□□□ 0.88
SSX3-204ENST00000612497 WDR62O43379 1518 aa20.49■□□□□ 0.87
SSX3-204ENST00000612497 CADPSQ9ULU8 1353 aa20.48■□□□□ 0.87
SSX3-204ENST00000612497 OSCARQ8IYS5 282 aa20.48■□□□□ 0.87
SSX3-204ENST00000612497 MROH2BQ7Z745 1585 aa20.43■□□□□ 0.86
SSX3-204ENST00000612497 CEP164Q9UPV0 1460 aa20.34■□□□□ 0.85
SSX3-204ENST00000612497 FANCD2Q9BXW9 1451 aa20.26■□□□□ 0.83
SSX3-204ENST00000612497 RIMBP3CA6NJZ7 1639 aa20.25■□□□□ 0.83
SSX3-204ENST00000612497 RIMBP3BA6NNM3 1639 aa20.25■□□□□ 0.83
SSX3-204ENST00000612497 RIMBP3Q9UFD9 1639 aa20.25■□□□□ 0.83
SSX3-204ENST00000612497 CHIC1Q5VXU3 224 aa20.25■□□□□ 0.83
SSX3-204ENST00000612497 WIZO95785 1651 aa20.18■□□□□ 0.82
SSX3-204ENST00000612497 URB2Q14146 1524 aaKnown RBP20.12■□□□□ 0.81
SSX3-204ENST00000612497 ARHGEF11O15085 1522 aa20.11■□□□□ 0.81
SSX3-204ENST00000612497 CFTRP13569 1480 aa20.1■□□□□ 0.81
SSX3-204ENST00000612497 TRHP20396 242 aaPredicted RBP20.07■□□□□ 0.8
SSX3-204ENST00000612497 CYB5RLQ6IPT4 315 aa20.06■□□□□ 0.8
SSX3-204ENST00000612497 ZNF608Q9ULD9 1512 aaPredicted RBP19.98■□□□□ 0.79
SSX3-204ENST00000612497 IFT140Q96RY7 1462 aa19.95■□□□□ 0.78
SSX3-204ENST00000612497 PRDM2Q13029 1718 aa19.88■□□□□ 0.77
SSX3-204ENST00000612497 ARAP1Q96P48 1450 aa19.86■□□□□ 0.77
SSX3-204ENST00000612497 TOP2AP11388 1531 aaKnown RBP19.85■□□□□ 0.77
SSX3-204ENST00000612497 CHD1O14646 1710 aa19.84■□□□□ 0.77
SSX3-204ENST00000612497 EIF4G3O43432 1585 aaKnown RBP19.83■□□□□ 0.77
SSX3-204ENST00000612497 FBLN2P98095 1184 aa19.8■□□□□ 0.76
SSX3-204ENST00000612497 TOPBP1Q92547 1522 aa19.8■□□□□ 0.76
SSX3-204ENST00000612497 RSF1Q96T23 1441 aaPredicted RBP19.78■□□□□ 0.76
SSX3-204ENST00000612497 AQRO60306 1485 aaKnown RBP eCLIP19.74■□□□□ 0.754e-6■■□□□ 13.4
SSX3-204ENST00000612497 ABCC8Q09428 1581 aa19.72■□□□□ 0.75
SSX3-204ENST00000612497 DNMBPQ6XZF7 1577 aa19.66■□□□□ 0.74
SSX3-204ENST00000612497 TARBP1Q13395 1621 aaKnown RBP19.66■□□□□ 0.74
SSX3-204ENST00000612497 CCDC88BA6NC98 1476 aa19.65■□□□□ 0.74
SSX3-204ENST00000612497 CLASP1Q7Z460 1538 aa19.55■□□□□ 0.72
SSX3-204ENST00000612497 POLA1P09884 1462 aaPredicted RBP19.54■□□□□ 0.72
SSX3-204ENST00000612497 CHMP7Q8WUX9 453 aaPredicted RBP19.53■□□□□ 0.72
SSX3-204ENST00000612497 TDRD9Q8NDG6 1382 aaKnown RBP19.53■□□□□ 0.72
SSX3-204ENST00000612497 RAD54L2Q9Y4B4 1467 aa19.52■□□□□ 0.72
SSX3-204ENST00000612497 SNAPC4Q5SXM2 1469 aa19.51■□□□□ 0.71
SSX3-204ENST00000612497 SYNJ1O43426 1573 aa19.51■□□□□ 0.71
SSX3-204ENST00000612497 SOGA1O94964 1423 aa19.48■□□□□ 0.71
SSX3-204ENST00000612497 MAGI1Q96QZ7 1491 aaPredicted RBP19.42■□□□□ 0.7
SSX3-204ENST00000612497 GAPVD1Q14C86 1478 aa19.41■□□□□ 0.7
SSX3-204ENST00000612497 WDR97A6NE52 1622 aa19.4■□□□□ 0.7
SSX3-204ENST00000612497 SYNJ2O15056 1496 aa19.37■□□□□ 0.69
SSX3-204ENST00000612497 GRIN2BQ13224 1484 aa19.36■□□□□ 0.69
SSX3-204ENST00000612497 FGD5Q6ZNL6 1462 aa19.35■□□□□ 0.69
SSX3-204ENST00000612497 PBRM1Q86U86 1689 aa19.26■□□□□ 0.67
SSX3-204ENST00000612497 CUX1P39880 1505 aa19.23■□□□□ 0.67
SSX3-204ENST00000612497 ERCC6L2Q5T890 1561 aa19.23■□□□□ 0.67
SSX3-204ENST00000612497 KIF13AQ9H1H9 1805 aa19.18■□□□□ 0.66
SSX3-204ENST00000612497 CEP170Q5SW79 1584 aa19.13■□□□□ 0.65
SSX3-204ENST00000612497 GRIN2AQ12879 1464 aa19.11■□□□□ 0.65
SSX3-204ENST00000612497 ILDR1Q86SU0 546 aaPredicted RBP19.11■□□□□ 0.65
SSX3-204ENST00000612497 ABCA5Q8WWZ7 1642 aa19.11■□□□□ 0.65
SSX3-204ENST00000612497 ABCA10Q8WWZ4 1543 aa19.08■□□□□ 0.64
SSX3-204ENST00000612497 NUP160Q12769 1436 aa19.05■□□□□ 0.64
SSX3-204ENST00000612497 SHROOM2Q13796 1616 aa19.04■□□□□ 0.64
SSX3-204ENST00000612497 FAM69CQ0P6D2 419 aa19.03■□□□□ 0.64
SSX3-204ENST00000612497 KDM4FA0A1W2PPD8 638 aa19.02■□□□□ 0.64
SSX3-204ENST00000612497 ADAMTS12P58397 1594 aa19.02■□□□□ 0.63
SSX3-204ENST00000612497 ABCC10Q5T3U5 1492 aa18.97■□□□□ 0.63
SSX3-204ENST00000612497 NPM1P06748 294 aaKnown RBP eCLIP18.96■□□□□ 0.63
SSX3-204ENST00000612497 PRG4Q92954 1404 aaPredicted RBP18.96■□□□□ 0.63
SSX3-204ENST00000612497 FHAD1B1AJZ9 1412 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms