RNA–Protein interactions for RNA: ENST00000609143.5

LINC01278-204, Transcript of long intergenic non-protein coding RNA 1278, humanhuman

TSL 1 (best) BASIC

Gene LINC01278, Length 2,768 nt, Biotype sense overlapping, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01278-204ENST00000609143 NISCHQ9Y2I1 1504 aa25.3■■□□□ 1.64
LINC01278-204ENST00000609143 CCDC180Q9P1Z9 1646 aa21.96■■□□□ 1.11
LINC01278-204ENST00000609143 ZCCHC6Q5VYS8 1495 aaKnown RBP21.31■■□□□ 1
LINC01278-204ENST00000609143 DCAF1Q9Y4B6 1507 aa20.92■□□□□ 0.94
LINC01278-204ENST00000609143 DCAF8L2P0C7V8 631 aa20.86■□□□□ 0.93
LINC01278-204ENST00000609143 SHROOM4Q9ULL8 1493 aa20.85■□□□□ 0.93
LINC01278-204ENST00000609143 MYO15BQ96JP2 1530 aa20.57■□□□□ 0.88
LINC01278-204ENST00000609143 ABCC9O60706 1549 aa20.56■□□□□ 0.88
LINC01278-204ENST00000609143 NACADO15069 1562 aa20.39■□□□□ 0.86
LINC01278-204ENST00000609143 SCRIBQ14160 1630 aa20.25■□□□□ 0.83
LINC01278-204ENST00000609143 SUPT5HO00267 1087 aaKnown RBP20.19■□□□□ 0.82
LINC01278-204ENST00000609143 RB1CC1Q8TDY2 1594 aa20.17■□□□□ 0.82
LINC01278-204ENST00000609143 UNC13AQ9UPW8 1703 aa19.76■□□□□ 0.75
LINC01278-204ENST00000609143 RSF1Q96T23 1441 aaPredicted RBP19.72■□□□□ 0.75
LINC01278-204ENST00000609143 CECR2Q9BXF3 1484 aa19.64■□□□□ 0.73
LINC01278-204ENST00000609143 MROH2BQ7Z745 1585 aa19.56■□□□□ 0.72
LINC01278-204ENST00000609143 BAZ1AQ9NRL2 1556 aaPredicted RBP19.53■□□□□ 0.72
LINC01278-204ENST00000609143 BICRAQ9NZM4 1560 aa19.53■□□□□ 0.72
LINC01278-204ENST00000609143 CHIC1Q5VXU3 224 aa19.43■□□□□ 0.7
LINC01278-204ENST00000609143 PABPN1Q86U42 306 aaKnown RBP eCLIP19.43■□□□□ 0.7
LINC01278-204ENST00000609143 WIZO95785 1651 aa19.42■□□□□ 0.7
LINC01278-204ENST00000609143 SMARCA4P51532 1647 aa19.41■□□□□ 0.7
LINC01278-204ENST00000609143 TOP2AP11388 1531 aaKnown RBP19.23■□□□□ 0.67
LINC01278-204ENST00000609143 PEG3Q9GZU2 1588 aa19.14■□□□□ 0.66
LINC01278-204ENST00000609143 SMARCA2P51531 1590 aa19.05■□□□□ 0.64
LINC01278-204ENST00000609143 CCDC88BA6NC98 1476 aa19.03■□□□□ 0.64
LINC01278-204ENST00000609143 ATAD2BQ9ULI0 1458 aa19.02■□□□□ 0.64
LINC01278-204ENST00000609143 EIF4G1Q04637 1599 aaKnown RBP18.98■□□□□ 0.63
LINC01278-204ENST00000609143 TRIM41Q8WV44 630 aa18.96■□□□□ 0.63
LINC01278-204ENST00000609143 BAZ1BQ9UIG0 1483 aaKnown RBP18.95■□□□□ 0.62
LINC01278-204ENST00000609143 HMGXB3Q12766 1538 aa18.82■□□□□ 0.6
LINC01278-204ENST00000609143 NCAPD3P42695 1498 aa18.81■□□□□ 0.6
LINC01278-204ENST00000609143 ABCC8Q09428 1581 aa18.72■□□□□ 0.59
LINC01278-204ENST00000609143 LOC105371045A0A1W2PR82 267 aa18.7■□□□□ 0.58
LINC01278-204ENST00000609143 FAM9AQ8IZU1 332 aaPredicted RBP18.63■□□□□ 0.57
LINC01278-204ENST00000609143 CC2D2AQ9P2K1 1620 aa18.6■□□□□ 0.57
LINC01278-204ENST00000609143 WRNQ14191 1432 aaPredicted RBP eCLIP18.58■□□□□ 0.56
LINC01278-204ENST00000609143 SYNJ1O43426 1573 aa18.48■□□□□ 0.55
LINC01278-204ENST00000609143 CFTRP13569 1480 aa18.47■□□□□ 0.55
LINC01278-204ENST00000609143 EEA1Q15075 1411 aa18.45■□□□□ 0.54
LINC01278-204ENST00000609143 SOGA1O94964 1423 aa18.42■□□□□ 0.54
LINC01278-204ENST00000609143 PRDM2Q13029 1718 aa18.4■□□□□ 0.54
LINC01278-204ENST00000609143 TOP2BQ02880 1626 aa18.39■□□□□ 0.53
LINC01278-204ENST00000609143 BIVM-ERCC5R4GMW8 1640 aa18.37■□□□□ 0.53
LINC01278-204ENST00000609143 EHMT2Q96KQ7 1210 aa18.36■□□□□ 0.53
LINC01278-204ENST00000609143 CADPSQ9ULU8 1353 aa18.36■□□□□ 0.53
LINC01278-204ENST00000609143 RUSC2Q8N2Y8 1516 aa18.32■□□□□ 0.52
LINC01278-204ENST00000609143 CSRNP3Q8WYN3 585 aa18.31■□□□□ 0.52
LINC01278-204ENST00000609143 CUX1P39880 1505 aa18.28■□□□□ 0.52
LINC01278-204ENST00000609143 GOLGA3Q08378 1498 aa18.21■□□□□ 0.51
LINC01278-204ENST00000609143 TNIKQ9UKE5 1360 aa18.19■□□□□ 0.5
LINC01278-204ENST00000609143 KIF21BO75037 1637 aa18.19■□□□□ 0.5
LINC01278-204ENST00000609143 CEP164Q9UPV0 1460 aa18.19■□□□□ 0.5
LINC01278-204ENST00000609143 FANCD2Q9BXW9 1451 aa18.17■□□□□ 0.5
LINC01278-204ENST00000609143 LAMC3Q9Y6N6 1575 aa18.15■□□□□ 0.5
LINC01278-204ENST00000609143 UBTFP17480 764 aaKnown RBP18.13■□□□□ 0.49
LINC01278-204ENST00000609143 PCGF6Q9BYE7 350 aa18.13■□□□□ 0.49
LINC01278-204ENST00000609143 CEP162Q5TB80 1403 aa18.12■□□□□ 0.49
LINC01278-204ENST00000609143 NESP48681 1621 aa18.12■□□□□ 0.49
LINC01278-204ENST00000609143 KIF27Q86VH2 1401 aa18.1■□□□□ 0.49
LINC01278-204ENST00000609143 TRIM26Q12899 539 aaPredicted RBP18.06■□□□□ 0.48
LINC01278-204ENST00000609143 FGD5Q6ZNL6 1462 aa18.05■□□□□ 0.48
LINC01278-204ENST00000609143 DNMBPQ6XZF7 1577 aa18.05■□□□□ 0.48
LINC01278-204ENST00000609143 RAPGEF2Q9Y4G8 1499 aa18.03■□□□□ 0.48
LINC01278-204ENST00000609143 ERICH3Q5RHP9 1530 aa18.02■□□□□ 0.48
LINC01278-204ENST00000609143 DNAJC5BQ9UF47 199 aa18.02■□□□□ 0.48
LINC01278-204ENST00000609143 PRXQ9BXM0 1461 aa18.01■□□□□ 0.47
LINC01278-204ENST00000609143 PDS5BQ9NTI5 1447 aa18.01■□□□□ 0.47
LINC01278-204ENST00000609143 TOPBP1Q92547 1522 aa17.99■□□□□ 0.47
LINC01278-204ENST00000609143 CUX2O14529 1486 aa17.99■□□□□ 0.47
LINC01278-204ENST00000609143 CLIP1P30622 1438 aa17.93■□□□□ 0.46
LINC01278-204ENST00000609143 POLA1P09884 1462 aaPredicted RBP17.92■□□□□ 0.46
LINC01278-204ENST00000609143 URB2Q14146 1524 aaKnown RBP17.91■□□□□ 0.46
LINC01278-204ENST00000609143 KIF21AQ7Z4S6 1674 aa17.91■□□□□ 0.46
LINC01278-204ENST00000609143 ABCA10Q8WWZ4 1543 aa17.89■□□□□ 0.45
LINC01278-204ENST00000609143 IGF1RP08069 1367 aa17.88■□□□□ 0.45
LINC01278-204ENST00000609143 RAD54L2Q9Y4B4 1467 aa17.86■□□□□ 0.45
LINC01278-204ENST00000609143 PPARGC1BQ86YN6 1023 aaKnown RBP17.82■□□□□ 0.44
LINC01278-204ENST00000609143 CARMIL1Q5VZK9 1371 aa17.81■□□□□ 0.44
LINC01278-204ENST00000609143 WDR97A6NE52 1622 aa17.81■□□□□ 0.44
LINC01278-204ENST00000609143 VPS8Q8N3P4 1428 aa17.8■□□□□ 0.44
LINC01278-204ENST00000609143 HRCP23327 699 aa17.8■□□□□ 0.44
LINC01278-204ENST00000609143 RANGAP1P46060 587 aaPredicted RBP17.76■□□□□ 0.43
LINC01278-204ENST00000609143 MRC2Q9UBG0 1479 aa17.76■□□□□ 0.43
LINC01278-204ENST00000609143 CUL7Q14999 1698 aa17.75■□□□□ 0.43
LINC01278-204ENST00000609143 ABCA5Q8WWZ7 1642 aa17.73■□□□□ 0.43
LINC01278-204ENST00000609143 ARAP1Q96P48 1450 aa17.7■□□□□ 0.42
LINC01278-204ENST00000609143 TARBP1Q13395 1621 aaKnown RBP17.69■□□□□ 0.42
LINC01278-204ENST00000609143 GAPVD1Q14C86 1478 aa17.68■□□□□ 0.42
LINC01278-204ENST00000609143 TDRD9Q8NDG6 1382 aaKnown RBP17.68■□□□□ 0.42
LINC01278-204ENST00000609143 APLP2Q06481 763 aa17.67■□□□□ 0.42
LINC01278-204ENST00000609143 ARHGAP35Q9NRY4 1499 aa17.65■□□□□ 0.42
LINC01278-204ENST00000609143 TTBK1Q5TCY1 1321 aaPredicted RBP17.65■□□□□ 0.42
LINC01278-204ENST00000609143 WDR62O43379 1518 aa17.64■□□□□ 0.41
LINC01278-204ENST00000609143 ERCC6Q03468 1493 aa17.62■□□□□ 0.41
LINC01278-204ENST00000609143 CTTNBP2Q8WZ74 1663 aa17.59■□□□□ 0.41
LINC01278-204ENST00000609143 IFT140Q96RY7 1462 aa17.58■□□□□ 0.41
LINC01278-204ENST00000609143 PBRM1Q86U86 1689 aa17.57■□□□□ 0.4
LINC01278-204ENST00000609143 THOC2Q8NI27 1593 aaKnown RBP17.53■□□□□ 0.4
LINC01278-204ENST00000609143 EFCAB5A4FU69 1503 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms