RNA–Protein interactions for RNA: ENST00000604724.5

LINC01235-201, Transcript of long intergenic non-protein coding RNA 1235, humanhuman

TSL 2 BASIC

Gene LINC01235, Length 2,328 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01235-201ENST00000604724 NISCHQ9Y2I1 1504 aa24.02■■□□□ 1.44
LINC01235-201ENST00000604724 CCDC180Q9P1Z9 1646 aa20.76■□□□□ 0.91
LINC01235-201ENST00000604724 ZCCHC6Q5VYS8 1495 aaKnown RBP20.23■□□□□ 0.83
LINC01235-201ENST00000604724 SHROOM4Q9ULL8 1493 aa19.93■□□□□ 0.78
LINC01235-201ENST00000604724 DCAF8L2P0C7V8 631 aa19.86■□□□□ 0.77
LINC01235-201ENST00000604724 DCAF1Q9Y4B6 1507 aa19.77■□□□□ 0.76
LINC01235-201ENST00000604724 ABCC9O60706 1549 aa19.55■□□□□ 0.72
LINC01235-201ENST00000604724 MYO15BQ96JP2 1530 aa19.41■□□□□ 0.7
LINC01235-201ENST00000604724 NACADO15069 1562 aa19.27■□□□□ 0.68
LINC01235-201ENST00000604724 SCRIBQ14160 1630 aa19.26■□□□□ 0.67
LINC01235-201ENST00000604724 SUPT5HO00267 1087 aaKnown RBP19.26■□□□□ 0.67
LINC01235-201ENST00000604724 RB1CC1Q8TDY2 1594 aa19.07■□□□□ 0.64
LINC01235-201ENST00000604724 UNC13AQ9UPW8 1703 aa18.8■□□□□ 0.6
LINC01235-201ENST00000604724 RSF1Q96T23 1441 aaPredicted RBP18.76■□□□□ 0.59
LINC01235-201ENST00000604724 CECR2Q9BXF3 1484 aa18.72■□□□□ 0.59
LINC01235-201ENST00000604724 MROH2BQ7Z745 1585 aa18.62■□□□□ 0.57
LINC01235-201ENST00000604724 BICRAQ9NZM4 1560 aa18.57■□□□□ 0.56
LINC01235-201ENST00000604724 CHIC1Q5VXU3 224 aa18.52■□□□□ 0.56
LINC01235-201ENST00000604724 PABPN1Q86U42 306 aaKnown RBP eCLIP18.51■□□□□ 0.55
LINC01235-201ENST00000604724 WIZO95785 1651 aa18.5■□□□□ 0.55
LINC01235-201ENST00000604724 BAZ1AQ9NRL2 1556 aaPredicted RBP18.5■□□□□ 0.55
LINC01235-201ENST00000604724 SMARCA4P51532 1647 aa18.42■□□□□ 0.54
LINC01235-201ENST00000604724 TOP2AP11388 1531 aaKnown RBP18.23■□□□□ 0.51
LINC01235-201ENST00000604724 PEG3Q9GZU2 1588 aa18.13■□□□□ 0.49
LINC01235-201ENST00000604724 SMARCA2P51531 1590 aa18.11■□□□□ 0.49
LINC01235-201ENST00000604724 CCDC88BA6NC98 1476 aa18.09■□□□□ 0.49
LINC01235-201ENST00000604724 EIF4G1Q04637 1599 aaKnown RBP18.08■□□□□ 0.49
LINC01235-201ENST00000604724 ATAD2BQ9ULI0 1458 aa18.05■□□□□ 0.48
LINC01235-201ENST00000604724 TRIM41Q8WV44 630 aa18.01■□□□□ 0.47
LINC01235-201ENST00000604724 BAZ1BQ9UIG0 1483 aaKnown RBP17.96■□□□□ 0.47
LINC01235-201ENST00000604724 LOC105371045A0A1W2PR82 267 aa17.9■□□□□ 0.46
LINC01235-201ENST00000604724 ABCC8Q09428 1581 aa17.87■□□□□ 0.45
LINC01235-201ENST00000604724 NCAPD3P42695 1498 aa17.81■□□□□ 0.44
LINC01235-201ENST00000604724 HMGXB3Q12766 1538 aa17.8■□□□□ 0.44
LINC01235-201ENST00000604724 FAM9AQ8IZU1 332 aaPredicted RBP17.8■□□□□ 0.44
LINC01235-201ENST00000604724 CC2D2AQ9P2K1 1620 aa17.66■□□□□ 0.42
LINC01235-201ENST00000604724 WRNQ14191 1432 aaPredicted RBP eCLIP17.63■□□□□ 0.41
LINC01235-201ENST00000604724 EHMT2Q96KQ7 1210 aa17.61■□□□□ 0.41
LINC01235-201ENST00000604724 SYNJ1O43426 1573 aa17.6■□□□□ 0.41
LINC01235-201ENST00000604724 SOGA1O94964 1423 aa17.57■□□□□ 0.4
LINC01235-201ENST00000604724 CFTRP13569 1480 aa17.52■□□□□ 0.39
LINC01235-201ENST00000604724 RUSC2Q8N2Y8 1516 aa17.51■□□□□ 0.39
LINC01235-201ENST00000604724 TOP2BQ02880 1626 aa17.45■□□□□ 0.38
LINC01235-201ENST00000604724 EEA1Q15075 1411 aa17.42■□□□□ 0.38
LINC01235-201ENST00000604724 BIVM-ERCC5R4GMW8 1640 aa17.42■□□□□ 0.38
LINC01235-201ENST00000604724 PRDM2Q13029 1718 aa17.42■□□□□ 0.38
LINC01235-201ENST00000604724 CADPSQ9ULU8 1353 aa17.39■□□□□ 0.37
LINC01235-201ENST00000604724 CUX1P39880 1505 aa17.39■□□□□ 0.37
LINC01235-201ENST00000604724 CSRNP3Q8WYN3 585 aa17.38■□□□□ 0.37
LINC01235-201ENST00000604724 PCGF6Q9BYE7 350 aa17.33■□□□□ 0.36
LINC01235-201ENST00000604724 DNAJC5BQ9UF47 199 aa17.27■□□□□ 0.36
LINC01235-201ENST00000604724 NESP48681 1621 aa17.27■□□□□ 0.35
LINC01235-201ENST00000604724 GOLGA3Q08378 1498 aa17.26■□□□□ 0.35
LINC01235-201ENST00000604724 KIF21BO75037 1637 aa17.25■□□□□ 0.35
LINC01235-201ENST00000604724 TNIKQ9UKE5 1360 aa17.25■□□□□ 0.35
LINC01235-201ENST00000604724 CEP162Q5TB80 1403 aa17.24■□□□□ 0.35
LINC01235-201ENST00000604724 FANCD2Q9BXW9 1451 aa17.23■□□□□ 0.35
LINC01235-201ENST00000604724 CEP164Q9UPV0 1460 aa17.23■□□□□ 0.35
LINC01235-201ENST00000604724 UBTFP17480 764 aaKnown RBP17.22■□□□□ 0.35
LINC01235-201ENST00000604724 RAPGEF2Q9Y4G8 1499 aa17.18■□□□□ 0.34
LINC01235-201ENST00000604724 TRIM26Q12899 539 aaPredicted RBP17.16■□□□□ 0.34
LINC01235-201ENST00000604724 LAMC3Q9Y6N6 1575 aa17.16■□□□□ 0.34
LINC01235-201ENST00000604724 FGD5Q6ZNL6 1462 aa17.15■□□□□ 0.34
LINC01235-201ENST00000604724 KIF27Q86VH2 1401 aa17.13■□□□□ 0.33
LINC01235-201ENST00000604724 PRXQ9BXM0 1461 aa17.11■□□□□ 0.33
LINC01235-201ENST00000604724 DNMBPQ6XZF7 1577 aa17.1■□□□□ 0.33
LINC01235-201ENST00000604724 PPARGC1BQ86YN6 1023 aaKnown RBP17.09■□□□□ 0.33
LINC01235-201ENST00000604724 CUX2O14529 1486 aa17.08■□□□□ 0.32
LINC01235-201ENST00000604724 TOPBP1Q92547 1522 aa17.07■□□□□ 0.32
LINC01235-201ENST00000604724 ERICH3Q5RHP9 1530 aa17.07■□□□□ 0.32
LINC01235-201ENST00000604724 URB2Q14146 1524 aaKnown RBP17.03■□□□□ 0.32
LINC01235-201ENST00000604724 POLA1P09884 1462 aaPredicted RBP17.03■□□□□ 0.32
LINC01235-201ENST00000604724 KIF21AQ7Z4S6 1674 aa17.03■□□□□ 0.32
LINC01235-201ENST00000604724 CLIP1P30622 1438 aa17.02■□□□□ 0.32
LINC01235-201ENST00000604724 RAD54L2Q9Y4B4 1467 aa17.01■□□□□ 0.31
LINC01235-201ENST00000604724 PDS5BQ9NTI5 1447 aa17.01■□□□□ 0.31
LINC01235-201ENST00000604724 IGF1RP08069 1367 aa16.99■□□□□ 0.31
LINC01235-201ENST00000604724 HRCP23327 699 aa16.98■□□□□ 0.31
LINC01235-201ENST00000604724 RANGAP1P46060 587 aaPredicted RBP16.98■□□□□ 0.31
LINC01235-201ENST00000604724 ABCA10Q8WWZ4 1543 aa16.95■□□□□ 0.3
LINC01235-201ENST00000604724 TTBK1Q5TCY1 1321 aaPredicted RBP16.91■□□□□ 0.3
LINC01235-201ENST00000604724 WDR97A6NE52 1622 aa16.91■□□□□ 0.3
LINC01235-201ENST00000604724 VPS8Q8N3P4 1428 aa16.9■□□□□ 0.3
LINC01235-201ENST00000604724 CARMIL1Q5VZK9 1371 aa16.9■□□□□ 0.3
LINC01235-201ENST00000604724 ARAP1Q96P48 1450 aa16.85■□□□□ 0.29
LINC01235-201ENST00000604724 ABCA5Q8WWZ7 1642 aa16.82■□□□□ 0.28
LINC01235-201ENST00000604724 TDRD9Q8NDG6 1382 aaKnown RBP16.82■□□□□ 0.28
LINC01235-201ENST00000604724 TARBP1Q13395 1621 aaKnown RBP16.81■□□□□ 0.28
LINC01235-201ENST00000604724 MRC2Q9UBG0 1479 aa16.8■□□□□ 0.28
LINC01235-201ENST00000604724 ARHGAP35Q9NRY4 1499 aa16.8■□□□□ 0.28
LINC01235-201ENST00000604724 CUL7Q14999 1698 aa16.79■□□□□ 0.28
LINC01235-201ENST00000604724 GAPVD1Q14C86 1478 aa16.77■□□□□ 0.27
LINC01235-201ENST00000604724 WDR62O43379 1518 aa16.72■□□□□ 0.27
LINC01235-201ENST00000604724 APLP2Q06481 763 aa16.7■□□□□ 0.26
LINC01235-201ENST00000604724 CTTNBP2Q8WZ74 1663 aa16.68■□□□□ 0.26
LINC01235-201ENST00000604724 ERCC6Q03468 1493 aa16.68■□□□□ 0.26
LINC01235-201ENST00000604724 PBRM1Q86U86 1689 aa16.67■□□□□ 0.26
LINC01235-201ENST00000604724 AQRO60306 1485 aaKnown RBP eCLIP16.67■□□□□ 0.26
LINC01235-201ENST00000604724 THOC2Q8NI27 1593 aaKnown RBP16.64■□□□□ 0.25
LINC01235-201ENST00000604724 ZNF608Q9ULD9 1512 aaPredicted RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms