RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 NISCHQ9Y2I1 1504 aa23.79■■□□□ 1.4
VRK3-224ENST00000601849 ABCC9O60706 1549 aa21.49■■□□□ 1.03
VRK3-224ENST00000601849 CCDC180Q9P1Z9 1646 aa21.37■■□□□ 1.01
VRK3-224ENST00000601849 RB1CC1Q8TDY2 1594 aa20.45■□□□□ 0.86
VRK3-224ENST00000601849 DCAF8L2P0C7V8 631 aa20.32■□□□□ 0.84
VRK3-224ENST00000601849 NACADO15069 1562 aa20.28■□□□□ 0.84
VRK3-224ENST00000601849 DNAJC5BQ9UF47 199 aa20.19■□□□□ 0.82
VRK3-224ENST00000601849 PABPN1Q86U42 306 aaKnown RBP eCLIP20.03■□□□□ 0.8
VRK3-224ENST00000601849 MYO15BQ96JP2 1530 aa19.96■□□□□ 0.79
VRK3-224ENST00000601849 UNC13AQ9UPW8 1703 aa19.82■□□□□ 0.76
VRK3-224ENST00000601849 BICRAQ9NZM4 1560 aa19.72■□□□□ 0.75
VRK3-224ENST00000601849 ZCCHC6Q5VYS8 1495 aaKnown RBP19.66■□□□□ 0.74
VRK3-224ENST00000601849 DCAF1Q9Y4B6 1507 aa19.66■□□□□ 0.74
VRK3-224ENST00000601849 SHROOM4Q9ULL8 1493 aa19.58■□□□□ 0.72
VRK3-224ENST00000601849 SCRIBQ14160 1630 aa19.46■□□□□ 0.71
VRK3-224ENST00000601849 CECR2Q9BXF3 1484 aa19.39■□□□□ 0.69
VRK3-224ENST00000601849 CC2D2AQ9P2K1 1620 aa19.37■□□□□ 0.69
VRK3-224ENST00000601849 EIF4G1Q04637 1599 aaKnown RBP19.32■□□□□ 0.68
VRK3-224ENST00000601849 NCAPD3P42695 1498 aa18.72■□□□□ 0.59
VRK3-224ENST00000601849 DNAJC5Q9H3Z4 198 aa18.72■□□□□ 0.59
VRK3-224ENST00000601849 ERCC6Q03468 1493 aa18.64■□□□□ 0.57
VRK3-224ENST00000601849 ATAD2BQ9ULI0 1458 aa18.63■□□□□ 0.57
VRK3-224ENST00000601849 SMARCA2P51531 1590 aa18.61■□□□□ 0.57
VRK3-224ENST00000601849 CUX2O14529 1486 aa18.58■□□□□ 0.57
VRK3-224ENST00000601849 SMARCA4P51532 1647 aa18.55■□□□□ 0.56
VRK3-224ENST00000601849 HMGXB3Q12766 1538 aa18.54■□□□□ 0.56
VRK3-224ENST00000601849 BAZ1AQ9NRL2 1556 aaPredicted RBP18.51■□□□□ 0.55
VRK3-224ENST00000601849 BAZ1BQ9UIG0 1483 aaKnown RBP18.48■□□□□ 0.55
VRK3-224ENST00000601849 NESP48681 1621 aa18.38■□□□□ 0.53
VRK3-224ENST00000601849 PEG3Q9GZU2 1588 aa18.37■□□□□ 0.53
VRK3-224ENST00000601849 LAMC3Q9Y6N6 1575 aa18.31■□□□□ 0.52
VRK3-224ENST00000601849 PDS5BQ9NTI5 1447 aa18.3■□□□□ 0.52
VRK3-224ENST00000601849 MROH2BQ7Z745 1585 aa18.3■□□□□ 0.52
VRK3-224ENST00000601849 CADPSQ9ULU8 1353 aa18.18■□□□□ 0.5
VRK3-224ENST00000601849 THOC2Q8NI27 1593 aaKnown RBP18.17■□□□□ 0.5
VRK3-224ENST00000601849 KIF21AQ7Z4S6 1674 aa18.12■□□□□ 0.49
VRK3-224ENST00000601849 WIZO95785 1651 aa18.06■□□□□ 0.48
VRK3-224ENST00000601849 MRC2Q9UBG0 1479 aa18.05■□□□□ 0.48
VRK3-224ENST00000601849 CEP164Q9UPV0 1460 aa17.98■□□□□ 0.47
VRK3-224ENST00000601849 WDR62O43379 1518 aa17.96■□□□□ 0.47
VRK3-224ENST00000601849 FANCD2Q9BXW9 1451 aa17.95■□□□□ 0.46
VRK3-224ENST00000601849 RSF1Q96T23 1441 aaPredicted RBP17.92■□□□□ 0.46
VRK3-224ENST00000601849 CFTRP13569 1480 aa17.91■□□□□ 0.46
VRK3-224ENST00000601849 TRIM41Q8WV44 630 aa17.9■□□□□ 0.46
VRK3-224ENST00000601849 TOP2AP11388 1531 aaKnown RBP17.86■□□□□ 0.45
VRK3-224ENST00000601849 OSCARQ8IYS5 282 aa17.84■□□□□ 0.45
VRK3-224ENST00000601849 URB2Q14146 1524 aaKnown RBP17.73■□□□□ 0.43
VRK3-224ENST00000601849 CCDC88BA6NC98 1476 aa17.69■□□□□ 0.42
VRK3-224ENST00000601849 PRDM2Q13029 1718 aa17.64■□□□□ 0.41
VRK3-224ENST00000601849 ABCC8Q09428 1581 aa17.64■□□□□ 0.41
VRK3-224ENST00000601849 IFT140Q96RY7 1462 aa17.63■□□□□ 0.41
VRK3-224ENST00000601849 TOPBP1Q92547 1522 aa17.56■□□□□ 0.4
VRK3-224ENST00000601849 ZNF608Q9ULD9 1512 aaPredicted RBP17.53■□□□□ 0.4
VRK3-224ENST00000601849 DNMBPQ6XZF7 1577 aa17.49■□□□□ 0.39
VRK3-224ENST00000601849 FBLN2P98095 1184 aa17.46■□□□□ 0.39
VRK3-224ENST00000601849 RIMBP3CA6NJZ7 1639 aa17.43■□□□□ 0.38
VRK3-224ENST00000601849 RIMBP3BA6NNM3 1639 aa17.43■□□□□ 0.38
VRK3-224ENST00000601849 RIMBP3Q9UFD9 1639 aa17.43■□□□□ 0.38
VRK3-224ENST00000601849 EIF4G3O43432 1585 aaKnown RBP17.43■□□□□ 0.38
VRK3-224ENST00000601849 AQRO60306 1485 aaKnown RBP eCLIP17.42■□□□□ 0.38
VRK3-224ENST00000601849 CYB5RLQ6IPT4 315 aa17.4■□□□□ 0.38
VRK3-224ENST00000601849 ARHGEF11O15085 1522 aa17.4■□□□□ 0.38
VRK3-224ENST00000601849 SOGA1O94964 1423 aa17.38■□□□□ 0.37
VRK3-224ENST00000601849 POLA1P09884 1462 aaPredicted RBP17.37■□□□□ 0.37
VRK3-224ENST00000601849 TARBP1Q13395 1621 aaKnown RBP17.36■□□□□ 0.37
VRK3-224ENST00000601849 TDRD9Q8NDG6 1382 aaKnown RBP17.33■□□□□ 0.36
VRK3-224ENST00000601849 CHMP7Q8WUX9 453 aaPredicted RBP17.32■□□□□ 0.36
VRK3-224ENST00000601849 RAD54L2Q9Y4B4 1467 aa17.31■□□□□ 0.36
VRK3-224ENST00000601849 TRHP20396 242 aaPredicted RBP17.3■□□□□ 0.36
VRK3-224ENST00000601849 CHD1O14646 1710 aa17.29■□□□□ 0.36
VRK3-224ENST00000601849 WDR97A6NE52 1622 aa17.27■□□□□ 0.36
VRK3-224ENST00000601849 FGD5Q6ZNL6 1462 aa17.25■□□□□ 0.35
VRK3-224ENST00000601849 SNAPC4Q5SXM2 1469 aa17.22■□□□□ 0.35
VRK3-224ENST00000601849 GRIN2BQ13224 1484 aa17.21■□□□□ 0.35
VRK3-224ENST00000601849 MAGI1Q96QZ7 1491 aaPredicted RBP17.21■□□□□ 0.35
VRK3-224ENST00000601849 SUPT5HO00267 1087 aaKnown RBP17.2■□□□□ 0.34
VRK3-224ENST00000601849 ARAP1Q96P48 1450 aa17.19■□□□□ 0.34
VRK3-224ENST00000601849 CUX1P39880 1505 aa17.19■□□□□ 0.34
VRK3-224ENST00000601849 SYNJ1O43426 1573 aa17.19■□□□□ 0.34
VRK3-224ENST00000601849 SYNJ2O15056 1496 aa17.15■□□□□ 0.34
VRK3-224ENST00000601849 GAPVD1Q14C86 1478 aa17.13■□□□□ 0.33
VRK3-224ENST00000601849 CLASP1Q7Z460 1538 aa17.11■□□□□ 0.33
VRK3-224ENST00000601849 ABCA10Q8WWZ4 1543 aa17.07■□□□□ 0.32
VRK3-224ENST00000601849 WRNQ14191 1432 aaPredicted RBP eCLIP17.06■□□□□ 0.32
VRK3-224ENST00000601849 PBRM1Q86U86 1689 aa17.04■□□□□ 0.32
VRK3-224ENST00000601849 ABCA5Q8WWZ7 1642 aa16.99■□□□□ 0.31
VRK3-224ENST00000601849 GRIN2AQ12879 1464 aa16.95■□□□□ 0.3
VRK3-224ENST00000601849 FHAD1B1AJZ9 1412 aa16.93■□□□□ 0.3
VRK3-224ENST00000601849 TOP2BQ02880 1626 aa16.92■□□□□ 0.3
VRK3-224ENST00000601849 AEBP2Q6ZN18 517 aaPredicted RBP16.91■□□□□ 0.3
VRK3-224ENST00000601849 BIVM-ERCC5R4GMW8 1640 aa16.89■□□□□ 0.29
VRK3-224ENST00000601849 ADAMTS12P58397 1594 aa16.88■□□□□ 0.29
VRK3-224ENST00000601849 NUP160Q12769 1436 aa16.87■□□□□ 0.29
VRK3-224ENST00000601849 ERICH3Q5RHP9 1530 aa16.87■□□□□ 0.29
VRK3-224ENST00000601849 JPH4Q96JJ6 628 aa16.84■□□□□ 0.29
VRK3-224ENST00000601849 CEP170Q5SW79 1584 aa16.84■□□□□ 0.29
VRK3-224ENST00000601849 NPM1P06748 294 aaKnown RBP eCLIP16.82■□□□□ 0.28
VRK3-224ENST00000601849 ERCC6L2Q5T890 1561 aa16.8■□□□□ 0.28
VRK3-224ENST00000601849 PRG4Q92954 1404 aaPredicted RBP16.79■□□□□ 0.28
VRK3-224ENST00000601849 SHROOM2Q13796 1616 aa16.77■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms