RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 NISCHQ9Y2I1 1504 aa15.6■□□□□ 0.09
VRK3-220ENST00000600259 ABCC9O60706 1549 aa14.16□□□□□ -0.14
VRK3-220ENST00000600259 CCDC180Q9P1Z9 1646 aa13.95□□□□□ -0.18
VRK3-220ENST00000600259 DNAJC5BQ9UF47 199 aa13.54□□□□□ -0.24
VRK3-220ENST00000600259 RB1CC1Q8TDY2 1594 aa13.37□□□□□ -0.27
VRK3-220ENST00000600259 NACADO15069 1562 aa13.28□□□□□ -0.28
VRK3-220ENST00000600259 DCAF8L2P0C7V8 631 aa13.22□□□□□ -0.29
VRK3-220ENST00000600259 PABPN1Q86U42 306 aaKnown RBP eCLIP13.22□□□□□ -0.29
VRK3-220ENST00000600259 MYO15BQ96JP2 1530 aa13.09□□□□□ -0.31
VRK3-220ENST00000600259 BICRAQ9NZM4 1560 aa13.06□□□□□ -0.32
VRK3-220ENST00000600259 UNC13AQ9UPW8 1703 aa13.02□□□□□ -0.32
VRK3-220ENST00000600259 ZCCHC6Q5VYS8 1495 aaKnown RBP12.88□□□□□ -0.35
VRK3-220ENST00000600259 DCAF1Q9Y4B6 1507 aa12.88□□□□□ -0.35
VRK3-220ENST00000600259 SHROOM4Q9ULL8 1493 aa12.82□□□□□ -0.36
VRK3-220ENST00000600259 CECR2Q9BXF3 1484 aa12.77□□□□□ -0.37
VRK3-220ENST00000600259 CC2D2AQ9P2K1 1620 aa12.76□□□□□ -0.37
VRK3-220ENST00000600259 SCRIBQ14160 1630 aa12.71□□□□□ -0.37
VRK3-220ENST00000600259 EIF4G1Q04637 1599 aaKnown RBP12.7□□□□□ -0.38
VRK3-220ENST00000600259 DNAJC5Q9H3Z4 198 aa12.49□□□□□ -0.41
VRK3-220ENST00000600259 AEBP2Q6ZN18 517 aaPredicted RBP12.48□□□□□ -0.41
VRK3-220ENST00000600259 NCAPD3P42695 1498 aa12.33□□□□□ -0.44
VRK3-220ENST00000600259 ATAD2BQ9ULI0 1458 aa12.26□□□□□ -0.45
VRK3-220ENST00000600259 CUX2O14529 1486 aa12.24□□□□□ -0.45
VRK3-220ENST00000600259 ERCC6Q03468 1493 aa12.18□□□□□ -0.46
VRK3-220ENST00000600259 CHIC1Q5VXU3 224 aa12.16□□□□□ -0.46
VRK3-220ENST00000600259 HMGXB3Q12766 1538 aa12.15□□□□□ -0.46
VRK3-220ENST00000600259 NESP48681 1621 aa12.15□□□□□ -0.47
VRK3-220ENST00000600259 SMARCA2P51531 1590 aa12.14□□□□□ -0.47
VRK3-220ENST00000600259 SMARCA4P51532 1647 aa12.14□□□□□ -0.47
VRK3-220ENST00000600259 BAZ1BQ9UIG0 1483 aaKnown RBP12.07□□□□□ -0.48
VRK3-220ENST00000600259 PEG3Q9GZU2 1588 aa12.06□□□□□ -0.48
VRK3-220ENST00000600259 BAZ1AQ9NRL2 1556 aaPredicted RBP12.06□□□□□ -0.48
VRK3-220ENST00000600259 MROH2BQ7Z745 1585 aa12.03□□□□□ -0.48
VRK3-220ENST00000600259 THOC2Q8NI27 1593 aaKnown RBP11.99□□□□□ -0.49
VRK3-220ENST00000600259 LAMC3Q9Y6N6 1575 aa11.98□□□□□ -0.49
VRK3-220ENST00000600259 PDS5BQ9NTI5 1447 aa11.95□□□□□ -0.5
VRK3-220ENST00000600259 CADPSQ9ULU8 1353 aa11.94□□□□□ -0.5
VRK3-220ENST00000600259 KIF21AQ7Z4S6 1674 aa11.88□□□□□ -0.51
VRK3-220ENST00000600259 MRC2Q9UBG0 1479 aa11.84□□□□□ -0.51
VRK3-220ENST00000600259 WIZO95785 1651 aa11.82□□□□□ -0.52
VRK3-220ENST00000600259 WDR62O43379 1518 aa11.81□□□□□ -0.52
VRK3-220ENST00000600259 TRIM41Q8WV44 630 aa11.8□□□□□ -0.52
VRK3-220ENST00000600259 CFTRP13569 1480 aa11.76□□□□□ -0.53
VRK3-220ENST00000600259 RSF1Q96T23 1441 aaPredicted RBP11.76□□□□□ -0.53
VRK3-220ENST00000600259 FANCD2Q9BXW9 1451 aa11.76□□□□□ -0.53
VRK3-220ENST00000600259 CEP164Q9UPV0 1460 aa11.76□□□□□ -0.53
VRK3-220ENST00000600259 OSCARQ8IYS5 282 aa11.72□□□□□ -0.53
VRK3-220ENST00000600259 URB2Q14146 1524 aaKnown RBP11.69□□□□□ -0.54
VRK3-220ENST00000600259 TOP2AP11388 1531 aaKnown RBP11.66□□□□□ -0.54
VRK3-220ENST00000600259 CCDC88BA6NC98 1476 aa11.6□□□□□ -0.55
VRK3-220ENST00000600259 ZNF608Q9ULD9 1512 aaPredicted RBP11.58□□□□□ -0.56
VRK3-220ENST00000600259 IFT140Q96RY7 1462 aa11.55□□□□□ -0.56
VRK3-220ENST00000600259 TOPBP1Q92547 1522 aa11.53□□□□□ -0.56
VRK3-220ENST00000600259 RIMBP3CA6NJZ7 1639 aa11.49□□□□□ -0.57
VRK3-220ENST00000600259 RIMBP3BA6NNM3 1639 aa11.49□□□□□ -0.57
VRK3-220ENST00000600259 RIMBP3Q9UFD9 1639 aa11.49□□□□□ -0.57
VRK3-220ENST00000600259 ARHGEF11O15085 1522 aa11.48□□□□□ -0.57
VRK3-220ENST00000600259 ABCC8Q09428 1581 aa11.48□□□□□ -0.57
VRK3-220ENST00000600259 PRDM2Q13029 1718 aa11.46□□□□□ -0.57
VRK3-220ENST00000600259 AQRO60306 1485 aaKnown RBP eCLIP11.46□□□□□ -0.57
VRK3-220ENST00000600259 CYB5RLQ6IPT4 315 aa11.45□□□□□ -0.58
VRK3-220ENST00000600259 DNMBPQ6XZF7 1577 aa11.44□□□□□ -0.58
VRK3-220ENST00000600259 TARBP1Q13395 1621 aaKnown RBP11.42□□□□□ -0.58
VRK3-220ENST00000600259 EIF4G3O43432 1585 aaKnown RBP11.41□□□□□ -0.58
VRK3-220ENST00000600259 POLA1P09884 1462 aaPredicted RBP11.41□□□□□ -0.58
VRK3-220ENST00000600259 TDRD9Q8NDG6 1382 aaKnown RBP11.39□□□□□ -0.59
VRK3-220ENST00000600259 ARAP1Q96P48 1450 aa11.38□□□□□ -0.59
VRK3-220ENST00000600259 RAD54L2Q9Y4B4 1467 aa11.38□□□□□ -0.59
VRK3-220ENST00000600259 FBLN2P98095 1184 aa11.38□□□□□ -0.59
VRK3-220ENST00000600259 SOGA1O94964 1423 aa11.37□□□□□ -0.59
VRK3-220ENST00000600259 CHD1O14646 1710 aa11.32□□□□□ -0.6
VRK3-220ENST00000600259 TRHP20396 242 aaPredicted RBP11.31□□□□□ -0.6
VRK3-220ENST00000600259 FGD5Q6ZNL6 1462 aa11.3□□□□□ -0.6
VRK3-220ENST00000600259 CHMP7Q8WUX9 453 aaPredicted RBP11.29□□□□□ -0.6
VRK3-220ENST00000600259 SNAPC4Q5SXM2 1469 aa11.29□□□□□ -0.6
VRK3-220ENST00000600259 CUX1P39880 1505 aa11.29□□□□□ -0.6
VRK3-220ENST00000600259 CLASP1Q7Z460 1538 aa11.28□□□□□ -0.6
VRK3-220ENST00000600259 GRIN2BQ13224 1484 aa11.26□□□□□ -0.61
VRK3-220ENST00000600259 MAGI1Q96QZ7 1491 aaPredicted RBP11.25□□□□□ -0.61
VRK3-220ENST00000600259 WDR97A6NE52 1622 aa11.24□□□□□ -0.61
VRK3-220ENST00000600259 SYNJ2O15056 1496 aa11.23□□□□□ -0.61
VRK3-220ENST00000600259 SYNJ1O43426 1573 aa11.2□□□□□ -0.62
VRK3-220ENST00000600259 GAPVD1Q14C86 1478 aa11.2□□□□□ -0.62
VRK3-220ENST00000600259 ABCA10Q8WWZ4 1543 aa11.19□□□□□ -0.62
VRK3-220ENST00000600259 ABCA5Q8WWZ7 1642 aa11.13□□□□□ -0.63
VRK3-220ENST00000600259 ERCC6L2Q5T890 1561 aa11.11□□□□□ -0.63
VRK3-220ENST00000600259 NUP160Q12769 1436 aa11.11□□□□□ -0.63
VRK3-220ENST00000600259 SUPT5HO00267 1087 aaKnown RBP11.11□□□□□ -0.63
VRK3-220ENST00000600259 GRIN2AQ12879 1464 aa11.11□□□□□ -0.63
VRK3-220ENST00000600259 WRNQ14191 1432 aaPredicted RBP eCLIP11.1□□□□□ -0.63
VRK3-220ENST00000600259 PBRM1Q86U86 1689 aa11.1□□□□□ -0.63
VRK3-220ENST00000600259 FHAD1B1AJZ9 1412 aa11.07□□□□□ -0.64
VRK3-220ENST00000600259 CEP170Q5SW79 1584 aa11.07□□□□□ -0.64
VRK3-220ENST00000600259 ADAMTS12P58397 1594 aa11.05□□□□□ -0.64
VRK3-220ENST00000600259 JPH4Q96JJ6 628 aa11.04□□□□□ -0.64
VRK3-220ENST00000600259 TOP2BQ02880 1626 aa11.03□□□□□ -0.64
VRK3-220ENST00000600259 SHROOM2Q13796 1616 aa11.02□□□□□ -0.64
VRK3-220ENST00000600259 BIVM-ERCC5R4GMW8 1640 aa11.02□□□□□ -0.65
VRK3-220ENST00000600259 ERICH3Q5RHP9 1530 aa11.01□□□□□ -0.65
VRK3-220ENST00000600259 PRG4Q92954 1404 aaPredicted RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms