RNA–Protein interactions for RNA: ENST00000600117.1

CCDC9-205, Transcript of coiled-coil domain containing 9, humanhuman

TSL 2

Gene CCDC9, Length 580 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-205ENST00000600117 NISCHQ9Y2I1 1504 aa44.99■■■■■ 4.79
CCDC9-205ENST00000600117 ABCC9O60706 1549 aa40.93■■■■■ 4.14
CCDC9-205ENST00000600117 CCDC180Q9P1Z9 1646 aa40.37■■■■■ 4.05
CCDC9-205ENST00000600117 DNAJC5BQ9UF47 199 aa38.98■■■■□ 3.83
CCDC9-205ENST00000600117 RB1CC1Q8TDY2 1594 aa38.73■■■■□ 3.79
CCDC9-205ENST00000600117 NACADO15069 1562 aa38.31■■■■□ 3.72
CCDC9-205ENST00000600117 PABPN1Q86U42 306 aaKnown RBP eCLIP37.99■■■■□ 3.67
CCDC9-205ENST00000600117 DCAF8L2P0C7V8 631 aa37.87■■■■□ 3.65
CCDC9-205ENST00000600117 UNC13AQ9UPW8 1703 aa37.87■■■■□ 3.65
CCDC9-205ENST00000600117 BICRAQ9NZM4 1560 aa37.62■■■■□ 3.61
CCDC9-205ENST00000600117 ZCCHC6Q5VYS8 1495 aaKnown RBP37.6■■■■□ 3.61
CCDC9-205ENST00000600117 MYO15BQ96JP2 1530 aa37.59■■■■□ 3.61
CCDC9-205ENST00000600117 DCAF1Q9Y4B6 1507 aa37.26■■■■□ 3.55
CCDC9-205ENST00000600117 SHROOM4Q9ULL8 1493 aa37.09■■■■□ 3.53
CCDC9-205ENST00000600117 CC2D2AQ9P2K1 1620 aa36.97■■■■□ 3.51
CCDC9-205ENST00000600117 CECR2Q9BXF3 1484 aa36.97■■■■□ 3.51
CCDC9-205ENST00000600117 EIF4G1Q04637 1599 aaKnown RBP36.74■■■■□ 3.47
CCDC9-205ENST00000600117 SCRIBQ14160 1630 aa36.68■■■■□ 3.46
CCDC9-205ENST00000600117 DNAJC5Q9H3Z4 198 aa36.32■■■■□ 3.4
CCDC9-205ENST00000600117 CUX2O14529 1486 aa35.6■■■■□ 3.29
CCDC9-205ENST00000600117 ERCC6Q03468 1493 aa35.41■■■■□ 3.26
CCDC9-205ENST00000600117 NCAPD3P42695 1498 aa35.37■■■■□ 3.25
CCDC9-205ENST00000600117 ATAD2BQ9ULI0 1458 aa35.15■■■■□ 3.22
CCDC9-205ENST00000600117 HMGXB3Q12766 1538 aa35.05■■■■□ 3.2
CCDC9-205ENST00000600117 SMARCA2P51531 1590 aa35.04■■■■□ 3.2
CCDC9-205ENST00000600117 NESP48681 1621 aa34.98■■■■□ 3.19
CCDC9-205ENST00000600117 SMARCA4P51532 1647 aa34.95■■■■□ 3.19
CCDC9-205ENST00000600117 BAZ1AQ9NRL2 1556 aaPredicted RBP34.82■■■■□ 3.16
CCDC9-205ENST00000600117 THOC2Q8NI27 1593 aaKnown RBP34.79■■■■□ 3.16
CCDC9-205ENST00000600117 BAZ1BQ9UIG0 1483 aaKnown RBP34.77■■■■□ 3.16
CCDC9-205ENST00000600117 MROH2BQ7Z745 1585 aa34.7■■■■□ 3.14
CCDC9-205ENST00000600117 LAMC3Q9Y6N6 1575 aa34.69■■■■□ 3.14
CCDC9-205ENST00000600117 PEG3Q9GZU2 1588 aa34.65■■■■□ 3.14
CCDC9-205ENST00000600117 KIF21AQ7Z4S6 1674 aa34.54■■■■□ 3.12
CCDC9-205ENST00000600117 PDS5BQ9NTI5 1447 aa34.5■■■■□ 3.11
CCDC9-205ENST00000600117 RSF1Q96T23 1441 aaPredicted RBP34.47■■■■□ 3.11
CCDC9-205ENST00000600117 TRIM41Q8WV44 630 aa34.4■■■■□ 3.1
CCDC9-205ENST00000600117 WIZO95785 1651 aa34.34■■■■□ 3.09
CCDC9-205ENST00000600117 CADPSQ9ULU8 1353 aa34.24■■■■□ 3.07
CCDC9-205ENST00000600117 MRC2Q9UBG0 1479 aa34.22■■■■□ 3.07
CCDC9-205ENST00000600117 WDR62O43379 1518 aa34.17■■■■□ 3.06
CCDC9-205ENST00000600117 TOP2AP11388 1531 aaKnown RBP34■■■■□ 3.03
CCDC9-205ENST00000600117 CEP164Q9UPV0 1460 aa33.95■■■■□ 3.03
CCDC9-205ENST00000600117 SUPT5HO00267 1087 aaKnown RBP33.9■■■■□ 3.02
CCDC9-205ENST00000600117 FANCD2Q9BXW9 1451 aa33.85■■■■□ 3.01
CCDC9-205ENST00000600117 OSCARQ8IYS5 282 aa33.84■■■■□ 3.01
CCDC9-205ENST00000600117 CFTRP13569 1480 aa33.72■■■□□ 2.99
CCDC9-205ENST00000600117 URB2Q14146 1524 aaKnown RBP33.61■■■□□ 2.97
CCDC9-205ENST00000600117 CCDC88BA6NC98 1476 aa33.59■■■□□ 2.97
CCDC9-205ENST00000600117 RIMBP3CA6NJZ7 1639 aa33.49■■■□□ 2.95
CCDC9-205ENST00000600117 RIMBP3BA6NNM3 1639 aa33.49■■■□□ 2.95
CCDC9-205ENST00000600117 RIMBP3Q9UFD9 1639 aa33.49■■■□□ 2.95
CCDC9-205ENST00000600117 PRDM2Q13029 1718 aa33.37■■■□□ 2.93
CCDC9-205ENST00000600117 ARHGEF11O15085 1522 aa33.31■■■□□ 2.92
CCDC9-205ENST00000600117 IFT140Q96RY7 1462 aa33.31■■■□□ 2.92
CCDC9-205ENST00000600117 ZNF608Q9ULD9 1512 aaPredicted RBP33.29■■■□□ 2.92
CCDC9-205ENST00000600117 TOPBP1Q92547 1522 aa33.13■■■□□ 2.89
CCDC9-205ENST00000600117 EIF4G3O43432 1585 aaKnown RBP33.1■■■□□ 2.89
CCDC9-205ENST00000600117 CYB5RLQ6IPT4 315 aa33.07■■■□□ 2.88
CCDC9-205ENST00000600117 ABCC8Q09428 1581 aa33.06■■■□□ 2.88
CCDC9-205ENST00000600117 CHD1O14646 1710 aa32.99■■■□□ 2.87
CCDC9-205ENST00000600117 DNMBPQ6XZF7 1577 aa32.97■■■□□ 2.87
CCDC9-205ENST00000600117 ARAP1Q96P48 1450 aa32.93■■■□□ 2.86
CCDC9-205ENST00000600117 TRHP20396 242 aaPredicted RBP32.92■■■□□ 2.86
CCDC9-205ENST00000600117 TARBP1Q13395 1621 aaKnown RBP32.91■■■□□ 2.86
CCDC9-205ENST00000600117 AQRO60306 1485 aaKnown RBP eCLIP32.91■■■□□ 2.866e-6■□□□□ 8.5
CCDC9-205ENST00000600117 FBLN2P98095 1184 aa32.8■■■□□ 2.84
CCDC9-205ENST00000600117 POLA1P09884 1462 aaPredicted RBP32.75■■■□□ 2.83
CCDC9-205ENST00000600117 RAD54L2Q9Y4B4 1467 aa32.62■■■□□ 2.81
CCDC9-205ENST00000600117 CLASP1Q7Z460 1538 aa32.6■■■□□ 2.81
CCDC9-205ENST00000600117 SOGA1O94964 1423 aa32.6■■■□□ 2.81
CCDC9-205ENST00000600117 TDRD9Q8NDG6 1382 aaKnown RBP32.59■■■□□ 2.81
CCDC9-205ENST00000600117 WDR97A6NE52 1622 aa32.57■■■□□ 2.8
CCDC9-205ENST00000600117 SNAPC4Q5SXM2 1469 aa32.56■■■□□ 2.8
CCDC9-205ENST00000600117 CUX1P39880 1505 aa32.52■■■□□ 2.8
CCDC9-205ENST00000600117 SYNJ1O43426 1573 aa32.52■■■□□ 2.8
CCDC9-205ENST00000600117 MAGI1Q96QZ7 1491 aaPredicted RBP32.48■■■□□ 2.79
CCDC9-205ENST00000600117 CHMP7Q8WUX9 453 aaPredicted RBP32.48■■■□□ 2.79
CCDC9-205ENST00000600117 WRNQ14191 1432 aaPredicted RBP eCLIP32.46■■■□□ 2.79
CCDC9-205ENST00000600117 AEBP2Q6ZN18 517 aaPredicted RBP32.45■■■□□ 2.79
CCDC9-205ENST00000600117 FGD5Q6ZNL6 1462 aa32.45■■■□□ 2.79
CCDC9-205ENST00000600117 GRIN2BQ13224 1484 aa32.4■■■□□ 2.78
CCDC9-205ENST00000600117 SYNJ2O15056 1496 aa32.37■■■□□ 2.77
CCDC9-205ENST00000600117 TOP2BQ02880 1626 aa32.36■■■□□ 2.77
CCDC9-205ENST00000600117 BIVM-ERCC5R4GMW8 1640 aa32.36■■■□□ 2.77
CCDC9-205ENST00000600117 GAPVD1Q14C86 1478 aa32.29■■■□□ 2.76
CCDC9-205ENST00000600117 PBRM1Q86U86 1689 aa32.24■■■□□ 2.75
CCDC9-205ENST00000600117 ABCA5Q8WWZ7 1642 aa32.08■■■□□ 2.73
CCDC9-205ENST00000600117 ABCA10Q8WWZ4 1543 aa32.06■■■□□ 2.72
CCDC9-205ENST00000600117 ERCC6L2Q5T890 1561 aa32.01■■■□□ 2.71
CCDC9-205ENST00000600117 GRIN2AQ12879 1464 aa31.98■■■□□ 2.71
CCDC9-205ENST00000600117 CHIC1Q5VXU3 224 aa31.98■■■□□ 2.71
CCDC9-205ENST00000600117 CEP170Q5SW79 1584 aa31.93■■■□□ 2.7
CCDC9-205ENST00000600117 NUP160Q12769 1436 aa31.91■■■□□ 2.7
CCDC9-205ENST00000600117 ADAMTS12P58397 1594 aa31.89■■■□□ 2.7
CCDC9-205ENST00000600117 SHROOM2Q13796 1616 aa31.86■■■□□ 2.69
CCDC9-205ENST00000600117 KIF13AQ9H1H9 1805 aa31.81■■■□□ 2.68
CCDC9-205ENST00000600117 FHAD1B1AJZ9 1412 aa31.76■■■□□ 2.68
CCDC9-205ENST00000600117 KIF27Q86VH2 1401 aa31.72■■■□□ 2.67
CCDC9-205ENST00000600117 ERICH3Q5RHP9 1530 aa31.66■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms