RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 NISCHQ9Y2I1 1504 aa47.68■■■■■ 5.22
SHKBP1-221ENST00000599833 CCDC180Q9P1Z9 1646 aa42.35■■■■■ 4.37
SHKBP1-221ENST00000599833 ABCC9O60706 1549 aa41.24■■■■■ 4.19
SHKBP1-221ENST00000599833 ZCCHC6Q5VYS8 1495 aaKnown RBP39.78■■■■□ 3.96
SHKBP1-221ENST00000599833 NACADO15069 1562 aa39.74■■■■□ 3.95
SHKBP1-221ENST00000599833 RB1CC1Q8TDY2 1594 aa39.72■■■■□ 3.95
SHKBP1-221ENST00000599833 MYO15BQ96JP2 1530 aa39.61■■■■□ 3.93
SHKBP1-221ENST00000599833 DCAF1Q9Y4B6 1507 aa39.49■■■■□ 3.91
SHKBP1-221ENST00000599833 DCAF8L2P0C7V8 631 aa39.48■■■■□ 3.91
SHKBP1-221ENST00000599833 UNC13AQ9UPW8 1703 aa39.02■■■■□ 3.84
SHKBP1-221ENST00000599833 BICRAQ9NZM4 1560 aa38.7■■■■□ 3.79
SHKBP1-221ENST00000599833 SCRIBQ14160 1630 aa38.6■■■■□ 3.77
SHKBP1-221ENST00000599833 PABPN1Q86U42 306 aaKnown RBP eCLIP38.53■■■■□ 3.76
SHKBP1-221ENST00000599833 SHROOM4Q9ULL8 1493 aa38.17■■■■□ 3.7
SHKBP1-221ENST00000599833 DNAJC5BQ9UF47 199 aa37.87■■■■□ 3.65
SHKBP1-221ENST00000599833 EIF4G1Q04637 1599 aaKnown RBP37.57■■■■□ 3.6
SHKBP1-221ENST00000599833 CC2D2AQ9P2K1 1620 aa37.39■■■■□ 3.58
SHKBP1-221ENST00000599833 CECR2Q9BXF3 1484 aa37.17■■■■□ 3.54
SHKBP1-221ENST00000599833 SMARCA4P51532 1647 aa36.99■■■■□ 3.51
SHKBP1-221ENST00000599833 BAZ1AQ9NRL2 1556 aaPredicted RBP36.9■■■■□ 3.5
SHKBP1-221ENST00000599833 MROH2BQ7Z745 1585 aa36.78■■■■□ 3.48
SHKBP1-221ENST00000599833 ATAD2BQ9ULI0 1458 aa36.74■■■■□ 3.47
SHKBP1-221ENST00000599833 NCAPD3P42695 1498 aa36.7■■■■□ 3.47
SHKBP1-221ENST00000599833 PEG3Q9GZU2 1588 aa36.68■■■■□ 3.46
SHKBP1-221ENST00000599833 SMARCA2P51531 1590 aa36.63■■■■□ 3.45
SHKBP1-221ENST00000599833 HMGXB3Q12766 1538 aa36.54■■■■□ 3.44
SHKBP1-221ENST00000599833 WIZO95785 1651 aa36.39■■■■□ 3.42
SHKBP1-221ENST00000599833 RSF1Q96T23 1441 aaPredicted RBP36.37■■■■□ 3.41
SHKBP1-221ENST00000599833 BAZ1BQ9UIG0 1483 aaKnown RBP36.36■■■■□ 3.41
SHKBP1-221ENST00000599833 TOP2AP11388 1531 aaKnown RBP35.97■■■■□ 3.35
SHKBP1-221ENST00000599833 NESP48681 1621 aa35.8■■■■□ 3.32
SHKBP1-221ENST00000599833 LAMC3Q9Y6N6 1575 aa35.68■■■■□ 3.3
SHKBP1-221ENST00000599833 CADPSQ9ULU8 1353 aa35.58■■■■□ 3.29
SHKBP1-221ENST00000599833 CCDC88BA6NC98 1476 aa35.54■■■■□ 3.28
SHKBP1-221ENST00000599833 CFTRP13569 1480 aa35.45■■■■□ 3.27
SHKBP1-221ENST00000599833 ERCC6Q03468 1493 aa35.43■■■■□ 3.26
SHKBP1-221ENST00000599833 KIF21AQ7Z4S6 1674 aa35.4■■■■□ 3.26
SHKBP1-221ENST00000599833 PDS5BQ9NTI5 1447 aa35.35■■■■□ 3.25
SHKBP1-221ENST00000599833 SUPT5HO00267 1087 aaKnown RBP35.31■■■■□ 3.24
SHKBP1-221ENST00000599833 THOC2Q8NI27 1593 aaKnown RBP35.29■■■■□ 3.24
SHKBP1-221ENST00000599833 PRDM2Q13029 1718 aa35.23■■■■□ 3.23
SHKBP1-221ENST00000599833 FANCD2Q9BXW9 1451 aa35.17■■■■□ 3.22
SHKBP1-221ENST00000599833 CUX2O14529 1486 aa35.13■■■■□ 3.21
SHKBP1-221ENST00000599833 CEP164Q9UPV0 1460 aa35.09■■■■□ 3.21
SHKBP1-221ENST00000599833 MRC2Q9UBG0 1479 aa35.05■■■■□ 3.2
SHKBP1-221ENST00000599833 WDR62O43379 1518 aa35.01■■■■□ 3.19
SHKBP1-221ENST00000599833 URB2Q14146 1524 aaKnown RBP34.9■■■■□ 3.18
SHKBP1-221ENST00000599833 TOPBP1Q92547 1522 aa34.66■■■■□ 3.14
SHKBP1-221ENST00000599833 DNMBPQ6XZF7 1577 aa34.63■■■■□ 3.13
SHKBP1-221ENST00000599833 ABCC8Q09428 1581 aa34.57■■■■□ 3.12
SHKBP1-221ENST00000599833 CUX1P39880 1505 aa34.49■■■■□ 3.11
SHKBP1-221ENST00000599833 POLA1P09884 1462 aaPredicted RBP34.39■■■■□ 3.1
SHKBP1-221ENST00000599833 IFT140Q96RY7 1462 aa34.37■■■■□ 3.09
SHKBP1-221ENST00000599833 TARBP1Q13395 1621 aaKnown RBP34.35■■■■□ 3.09
SHKBP1-221ENST00000599833 FGD5Q6ZNL6 1462 aa34.29■■■■□ 3.08
SHKBP1-221ENST00000599833 ZNF608Q9ULD9 1512 aaPredicted RBP34.28■■■■□ 3.08
SHKBP1-221ENST00000599833 SYNJ1O43426 1573 aa34.23■■■■□ 3.07
SHKBP1-221ENST00000599833 BIVM-ERCC5R4GMW8 1640 aa34.22■■■■□ 3.07
SHKBP1-221ENST00000599833 RAD54L2Q9Y4B4 1467 aa34.22■■■■□ 3.07
SHKBP1-221ENST00000599833 TOP2BQ02880 1626 aa34.21■■■■□ 3.07
SHKBP1-221ENST00000599833 WRNQ14191 1432 aaPredicted RBP eCLIP34.21■■■■□ 3.07
SHKBP1-221ENST00000599833 SOGA1O94964 1423 aa34.16■■■■□ 3.06
SHKBP1-221ENST00000599833 EIF4G3O43432 1585 aaKnown RBP34.15■■■■□ 3.06
SHKBP1-221ENST00000599833 WDR97A6NE52 1622 aa34.13■■■■□ 3.05
SHKBP1-221ENST00000599833 AQRO60306 1485 aaKnown RBP eCLIP34.05■■■■□ 3.04
SHKBP1-221ENST00000599833 ABCA10Q8WWZ4 1543 aa33.99■■■■□ 3.03
SHKBP1-221ENST00000599833 TDRD9Q8NDG6 1382 aaKnown RBP33.97■■■■□ 3.03
SHKBP1-221ENST00000599833 ABCA5Q8WWZ7 1642 aa33.9■■■■□ 3.02
SHKBP1-221ENST00000599833 DNAJC5Q9H3Z4 198 aa33.9■■■■□ 3.02
SHKBP1-221ENST00000599833 GAPVD1Q14C86 1478 aa33.79■■■■□ 3
SHKBP1-221ENST00000599833 PBRM1Q86U86 1689 aa33.79■■■■□ 3
SHKBP1-221ENST00000599833 GRIN2BQ13224 1484 aa33.76■■■■□ 3
SHKBP1-221ENST00000599833 SNAPC4Q5SXM2 1469 aa33.74■■■□□ 2.99
SHKBP1-221ENST00000599833 CHD1O14646 1710 aa33.7■■■□□ 2.99
SHKBP1-221ENST00000599833 MAGI1Q96QZ7 1491 aaPredicted RBP33.69■■■□□ 2.98
SHKBP1-221ENST00000599833 OSCARQ8IYS5 282 aa33.58■■■□□ 2.97
SHKBP1-221ENST00000599833 ERICH3Q5RHP9 1530 aa33.57■■■□□ 2.96
SHKBP1-221ENST00000599833 SYNJ2O15056 1496 aa33.56■■■□□ 2.96
SHKBP1-221ENST00000599833 ADAMTS12P58397 1594 aa33.55■■■□□ 2.96
SHKBP1-221ENST00000599833 KIF27Q86VH2 1401 aa33.44■■■□□ 2.94
SHKBP1-221ENST00000599833 FBLN2P98095 1184 aa33.41■■■□□ 2.94
SHKBP1-221ENST00000599833 FHAD1B1AJZ9 1412 aa33.4■■■□□ 2.94
SHKBP1-221ENST00000599833 CLASP1Q7Z460 1538 aa33.38■■■□□ 2.93
SHKBP1-221ENST00000599833 IGF1RP08069 1367 aa33.38■■■□□ 2.93
SHKBP1-221ENST00000599833 CHMP7Q8WUX9 453 aaPredicted RBP33.38■■■□□ 2.93
SHKBP1-221ENST00000599833 GRIN2AQ12879 1464 aa33.37■■■□□ 2.93
SHKBP1-221ENST00000599833 RUSC2Q8N2Y8 1516 aa33.33■■■□□ 2.93
SHKBP1-221ENST00000599833 TRIM41Q8WV44 630 aa33.33■■■□□ 2.93
SHKBP1-221ENST00000599833 CUL7Q14999 1698 aa33.28■■■□□ 2.92
SHKBP1-221ENST00000599833 CEP170Q5SW79 1584 aa33.27■■■□□ 2.92
SHKBP1-221ENST00000599833 NUP160Q12769 1436 aa33.27■■■□□ 2.92
SHKBP1-221ENST00000599833 RIMBP3CA6NJZ7 1639 aa33.2■■■□□ 2.9
SHKBP1-221ENST00000599833 RIMBP3BA6NNM3 1639 aa33.2■■■□□ 2.9
SHKBP1-221ENST00000599833 RIMBP3Q9UFD9 1639 aa33.2■■■□□ 2.9
SHKBP1-221ENST00000599833 ARHGEF11O15085 1522 aa33.18■■■□□ 2.9
SHKBP1-221ENST00000599833 CHIC1Q5VXU3 224 aa33.14■■■□□ 2.9
SHKBP1-221ENST00000599833 CARMIL1Q5VZK9 1371 aa33.11■■■□□ 2.89
SHKBP1-221ENST00000599833 SHROOM2Q13796 1616 aa33.06■■■□□ 2.88
SHKBP1-221ENST00000599833 ARAP1Q96P48 1450 aa32.96■■■□□ 2.87
SHKBP1-221ENST00000599833 PRXQ9BXM0 1461 aa32.96■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 282.2 ms