RNA–Protein interactions for RNA: ENST00000598570.5

USHBP1-209, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-209ENST00000598570 NISCHQ9Y2I1 1504 aa43.2■■■■■ 4.51
USHBP1-209ENST00000598570 CCDC180Q9P1Z9 1646 aa38.41■■■■□ 3.74
USHBP1-209ENST00000598570 ABCC9O60706 1549 aa37.42■■■■□ 3.58
USHBP1-209ENST00000598570 NACADO15069 1562 aa36.14■■■■□ 3.38
USHBP1-209ENST00000598570 RB1CC1Q8TDY2 1594 aa36.1■■■■□ 3.37
USHBP1-209ENST00000598570 MYO15BQ96JP2 1530 aa36.07■■■■□ 3.36
USHBP1-209ENST00000598570 ZCCHC6Q5VYS8 1495 aaKnown RBP35.97■■■■□ 3.35
USHBP1-209ENST00000598570 DCAF1Q9Y4B6 1507 aa35.87■■■■□ 3.33
USHBP1-209ENST00000598570 DCAF8L2P0C7V8 631 aa35.78■■■■□ 3.32
USHBP1-209ENST00000598570 UNC13AQ9UPW8 1703 aa35.29■■■■□ 3.24
USHBP1-209ENST00000598570 BICRAQ9NZM4 1560 aa35.1■■■■□ 3.21
USHBP1-209ENST00000598570 PABPN1Q86U42 306 aaKnown RBP eCLIP34.97■■■■□ 3.19
USHBP1-209ENST00000598570 SCRIBQ14160 1630 aa34.85■■■■□ 3.17
USHBP1-209ENST00000598570 SHROOM4Q9ULL8 1493 aa34.8■■■■□ 3.16
USHBP1-209ENST00000598570 DNAJC5BQ9UF47 199 aa34.53■■■■□ 3.12
USHBP1-209ENST00000598570 EIF4G1Q04637 1599 aaKnown RBP34.09■■■■□ 3.05
USHBP1-209ENST00000598570 CC2D2AQ9P2K1 1620 aa33.93■■■■□ 3.02
USHBP1-209ENST00000598570 CECR2Q9BXF3 1484 aa33.69■■■□□ 2.98
USHBP1-209ENST00000598570 SMARCA4P51532 1647 aa33.46■■■□□ 2.95
USHBP1-209ENST00000598570 BAZ1AQ9NRL2 1556 aaPredicted RBP33.44■■■□□ 2.94
USHBP1-209ENST00000598570 NCAPD3P42695 1498 aa33.4■■■□□ 2.94
USHBP1-209ENST00000598570 ATAD2BQ9ULI0 1458 aa33.34■■■□□ 2.93
USHBP1-209ENST00000598570 PEG3Q9GZU2 1588 aa33.29■■■□□ 2.92
USHBP1-209ENST00000598570 SMARCA2P51531 1590 aa33.27■■■□□ 2.92
USHBP1-209ENST00000598570 MROH2BQ7Z745 1585 aa33.25■■■□□ 2.91
USHBP1-209ENST00000598570 HMGXB3Q12766 1538 aa33.17■■■□□ 2.9
USHBP1-209ENST00000598570 BAZ1BQ9UIG0 1483 aaKnown RBP32.96■■■□□ 2.87
USHBP1-209ENST00000598570 RSF1Q96T23 1441 aaPredicted RBP32.91■■■□□ 2.86
USHBP1-209ENST00000598570 WIZO95785 1651 aa32.83■■■□□ 2.85
USHBP1-209ENST00000598570 TOP2AP11388 1531 aaKnown RBP32.53■■■□□ 2.8
USHBP1-209ENST00000598570 LAMC3Q9Y6N6 1575 aa32.43■■■□□ 2.78
USHBP1-209ENST00000598570 NESP48681 1621 aa32.43■■■□□ 2.78
USHBP1-209ENST00000598570 CADPSQ9ULU8 1353 aa32.36■■■□□ 2.77
USHBP1-209ENST00000598570 ERCC6Q03468 1493 aa32.21■■■□□ 2.75
USHBP1-209ENST00000598570 CFTRP13569 1480 aa32.2■■■□□ 2.75
USHBP1-209ENST00000598570 PDS5BQ9NTI5 1447 aa32.18■■■□□ 2.74
USHBP1-209ENST00000598570 CCDC88BA6NC98 1476 aa32.16■■■□□ 2.74
USHBP1-209ENST00000598570 CUX2O14529 1486 aa32.06■■■□□ 2.72
USHBP1-209ENST00000598570 KIF21AQ7Z4S6 1674 aa32.02■■■□□ 2.72
USHBP1-209ENST00000598570 THOC2Q8NI27 1593 aaKnown RBP31.99■■■□□ 2.71
USHBP1-209ENST00000598570 FANCD2Q9BXW9 1451 aa31.91■■■□□ 2.7
USHBP1-209ENST00000598570 PRDM2Q13029 1718 aa31.86■■■□□ 2.69
USHBP1-209ENST00000598570 MRC2Q9UBG0 1479 aa31.84■■■□□ 2.69
USHBP1-209ENST00000598570 CEP164Q9UPV0 1460 aa31.84■■■□□ 2.69
USHBP1-209ENST00000598570 SUPT5HO00267 1087 aaKnown RBP31.8■■■□□ 2.68
USHBP1-209ENST00000598570 WDR62O43379 1518 aa31.79■■■□□ 2.68
USHBP1-209ENST00000598570 URB2Q14146 1524 aaKnown RBP31.63■■■□□ 2.65
USHBP1-209ENST00000598570 ABCC8Q09428 1581 aa31.48■■■□□ 2.63
USHBP1-209ENST00000598570 TOPBP1Q92547 1522 aa31.43■■■□□ 2.62
USHBP1-209ENST00000598570 DNMBPQ6XZF7 1577 aa31.38■■■□□ 2.61
USHBP1-209ENST00000598570 IFT140Q96RY7 1462 aa31.24■■■□□ 2.59
USHBP1-209ENST00000598570 CUX1P39880 1505 aa31.19■■■□□ 2.58
USHBP1-209ENST00000598570 POLA1P09884 1462 aaPredicted RBP31.15■■■□□ 2.58
USHBP1-209ENST00000598570 DNAJC5Q9H3Z4 198 aa31.14■■■□□ 2.58
USHBP1-209ENST00000598570 TARBP1Q13395 1621 aaKnown RBP31.13■■■□□ 2.57
USHBP1-209ENST00000598570 ZNF608Q9ULD9 1512 aaPredicted RBP31.07■■■□□ 2.56
USHBP1-209ENST00000598570 FGD5Q6ZNL6 1462 aa31.03■■■□□ 2.56
USHBP1-209ENST00000598570 SOGA1O94964 1423 aa31.01■■■□□ 2.55
USHBP1-209ENST00000598570 RAD54L2Q9Y4B4 1467 aa30.97■■■□□ 2.55
USHBP1-209ENST00000598570 WRNQ14191 1432 aaPredicted RBP eCLIP30.94■■■□□ 2.54
USHBP1-209ENST00000598570 TOP2BQ02880 1626 aa30.93■■■□□ 2.54
USHBP1-209ENST00000598570 BIVM-ERCC5R4GMW8 1640 aa30.93■■■□□ 2.54
USHBP1-209ENST00000598570 WDR97A6NE52 1622 aa30.92■■■□□ 2.54
USHBP1-209ENST00000598570 EIF4G3O43432 1585 aaKnown RBP30.9■■■□□ 2.54
USHBP1-209ENST00000598570 AQRO60306 1485 aaKnown RBP eCLIP30.88■■■□□ 2.53
USHBP1-209ENST00000598570 SYNJ1O43426 1573 aa30.87■■■□□ 2.53
USHBP1-209ENST00000598570 ABCA10Q8WWZ4 1543 aa30.83■■■□□ 2.53
USHBP1-209ENST00000598570 TDRD9Q8NDG6 1382 aaKnown RBP30.8■■■□□ 2.52
USHBP1-209ENST00000598570 OSCARQ8IYS5 282 aa30.7■■■□□ 2.51
USHBP1-209ENST00000598570 ABCA5Q8WWZ7 1642 aa30.68■■■□□ 2.5
USHBP1-209ENST00000598570 GRIN2BQ13224 1484 aa30.66■■■□□ 2.5
USHBP1-209ENST00000598570 GAPVD1Q14C86 1478 aa30.65■■■□□ 2.5
USHBP1-209ENST00000598570 MAGI1Q96QZ7 1491 aaPredicted RBP30.61■■■□□ 2.49
USHBP1-209ENST00000598570 SNAPC4Q5SXM2 1469 aa30.56■■■□□ 2.48
USHBP1-209ENST00000598570 PBRM1Q86U86 1689 aa30.52■■■□□ 2.48
USHBP1-209ENST00000598570 CHD1O14646 1710 aa30.5■■■□□ 2.47
USHBP1-209ENST00000598570 SYNJ2O15056 1496 aa30.48■■■□□ 2.47
USHBP1-209ENST00000598570 ERICH3Q5RHP9 1530 aa30.45■■■□□ 2.47
USHBP1-209ENST00000598570 CHMP7Q8WUX9 453 aaPredicted RBP30.37■■■□□ 2.45
USHBP1-209ENST00000598570 FBLN2P98095 1184 aa30.34■■■□□ 2.45
USHBP1-209ENST00000598570 ADAMTS12P58397 1594 aa30.33■■■□□ 2.45
USHBP1-209ENST00000598570 FHAD1B1AJZ9 1412 aa30.33■■■□□ 2.45
USHBP1-209ENST00000598570 KIF27Q86VH2 1401 aa30.3■■■□□ 2.44
USHBP1-209ENST00000598570 CLASP1Q7Z460 1538 aa30.29■■■□□ 2.44
USHBP1-209ENST00000598570 IGF1RP08069 1367 aa30.28■■■□□ 2.44
USHBP1-209ENST00000598570 GRIN2AQ12879 1464 aa30.26■■■□□ 2.44
USHBP1-209ENST00000598570 NUP160Q12769 1436 aa30.21■■■□□ 2.43
USHBP1-209ENST00000598570 ARHGEF11O15085 1522 aa30.17■■■□□ 2.42
USHBP1-209ENST00000598570 RIMBP3CA6NJZ7 1639 aa30.15■■■□□ 2.42
USHBP1-209ENST00000598570 RIMBP3BA6NNM3 1639 aa30.15■■■□□ 2.42
USHBP1-209ENST00000598570 RIMBP3Q9UFD9 1639 aa30.15■■■□□ 2.42
USHBP1-209ENST00000598570 TRIM41Q8WV44 630 aa30.12■■■□□ 2.41
USHBP1-209ENST00000598570 CUL7Q14999 1698 aa30.11■■■□□ 2.41
USHBP1-209ENST00000598570 CEP170Q5SW79 1584 aa30.1■■■□□ 2.41
USHBP1-209ENST00000598570 RUSC2Q8N2Y8 1516 aa30.02■■■□□ 2.4
USHBP1-209ENST00000598570 CARMIL1Q5VZK9 1371 aa30.02■■■□□ 2.4
USHBP1-209ENST00000598570 SHROOM2Q13796 1616 aa29.99■■■□□ 2.39
USHBP1-209ENST00000598570 ARAP1Q96P48 1450 aa29.93■■■□□ 2.38
USHBP1-209ENST00000598570 KIAA0586Q9BVV6 1533 aa29.89■■■□□ 2.38
USHBP1-209ENST00000598570 CHIC1Q5VXU3 224 aa29.85■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms