RNA–Protein interactions for RNA: ENST00000597756.1

NOTCH3-204, Transcript of notch 3, humanhuman

TSL 2

Gene NOTCH3, Length 559 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3-204ENST00000597756 NISCHQ9Y2I1 1504 aa30.63■■■□□ 2.49
NOTCH3-204ENST00000597756 CCDC180Q9P1Z9 1646 aa27.21■■□□□ 1.95
NOTCH3-204ENST00000597756 ABCC9O60706 1549 aa26.55■■□□□ 1.84
NOTCH3-204ENST00000597756 NACADO15069 1562 aa25.58■■□□□ 1.69
NOTCH3-204ENST00000597756 RB1CC1Q8TDY2 1594 aa25.57■■□□□ 1.68
NOTCH3-204ENST00000597756 ZCCHC6Q5VYS8 1495 aaKnown RBP25.5■■□□□ 1.67
NOTCH3-204ENST00000597756 MYO15BQ96JP2 1530 aa25.49■■□□□ 1.67
NOTCH3-204ENST00000597756 DCAF8L2P0C7V8 631 aa25.47■■□□□ 1.67
NOTCH3-204ENST00000597756 DCAF1Q9Y4B6 1507 aa25.37■■□□□ 1.65
NOTCH3-204ENST00000597756 UNC13AQ9UPW8 1703 aa25.06■■□□□ 1.6
NOTCH3-204ENST00000597756 BICRAQ9NZM4 1560 aa24.87■■□□□ 1.57
NOTCH3-204ENST00000597756 PABPN1Q86U42 306 aaKnown RBP eCLIP24.83■■□□□ 1.57
NOTCH3-204ENST00000597756 SCRIBQ14160 1630 aa24.75■■□□□ 1.55
NOTCH3-204ENST00000597756 SHROOM4Q9ULL8 1493 aa24.58■■□□□ 1.53
NOTCH3-204ENST00000597756 DNAJC5BQ9UF47 199 aa24.48■■□□□ 1.51
NOTCH3-204ENST00000597756 EIF4G1Q04637 1599 aaKnown RBP24.16■■□□□ 1.46
NOTCH3-204ENST00000597756 CC2D2AQ9P2K1 1620 aa24.06■■□□□ 1.44
NOTCH3-204ENST00000597756 CECR2Q9BXF3 1484 aa23.87■■□□□ 1.41
NOTCH3-204ENST00000597756 SMARCA4P51532 1647 aa23.74■■□□□ 1.39
NOTCH3-204ENST00000597756 BAZ1AQ9NRL2 1556 aaPredicted RBP23.7■■□□□ 1.38
NOTCH3-204ENST00000597756 NCAPD3P42695 1498 aa23.64■■□□□ 1.38
NOTCH3-204ENST00000597756 ATAD2BQ9ULI0 1458 aa23.62■■□□□ 1.37
NOTCH3-204ENST00000597756 MROH2BQ7Z745 1585 aa23.59■■□□□ 1.37
NOTCH3-204ENST00000597756 SMARCA2P51531 1590 aa23.57■■□□□ 1.36
NOTCH3-204ENST00000597756 PEG3Q9GZU2 1588 aa23.56■■□□□ 1.36
NOTCH3-204ENST00000597756 HMGXB3Q12766 1538 aa23.49■■□□□ 1.35
NOTCH3-204ENST00000597756 BAZ1BQ9UIG0 1483 aaKnown RBP23.37■■□□□ 1.33
NOTCH3-204ENST00000597756 RSF1Q96T23 1441 aaPredicted RBP23.34■■□□□ 1.33
NOTCH3-204ENST00000597756 WIZO95785 1651 aa23.32■■□□□ 1.32
NOTCH3-204ENST00000597756 TOP2AP11388 1531 aaKnown RBP23.07■■□□□ 1.28
NOTCH3-204ENST00000597756 NESP48681 1621 aa23.01■■□□□ 1.27
NOTCH3-204ENST00000597756 LAMC3Q9Y6N6 1575 aa22.97■■□□□ 1.27
NOTCH3-204ENST00000597756 CADPSQ9ULU8 1353 aa22.92■■□□□ 1.26
NOTCH3-204ENST00000597756 ERCC6Q03468 1493 aa22.84■■□□□ 1.25
NOTCH3-204ENST00000597756 CCDC88BA6NC98 1476 aa22.82■■□□□ 1.24
NOTCH3-204ENST00000597756 PDS5BQ9NTI5 1447 aa22.8■■□□□ 1.24
NOTCH3-204ENST00000597756 CFTRP13569 1480 aa22.79■■□□□ 1.24
NOTCH3-204ENST00000597756 KIF21AQ7Z4S6 1674 aa22.74■■□□□ 1.23
NOTCH3-204ENST00000597756 CUX2O14529 1486 aa22.67■■□□□ 1.22
NOTCH3-204ENST00000597756 SUPT5HO00267 1087 aaKnown RBP22.67■■□□□ 1.22
NOTCH3-204ENST00000597756 THOC2Q8NI27 1593 aaKnown RBP22.67■■□□□ 1.22
NOTCH3-204ENST00000597756 FANCD2Q9BXW9 1451 aa22.62■■□□□ 1.21
NOTCH3-204ENST00000597756 PRDM2Q13029 1718 aa22.61■■□□□ 1.21
NOTCH3-204ENST00000597756 CEP164Q9UPV0 1460 aa22.57■■□□□ 1.2
NOTCH3-204ENST00000597756 MRC2Q9UBG0 1479 aa22.55■■□□□ 1.2
NOTCH3-204ENST00000597756 WDR62O43379 1518 aa22.5■■□□□ 1.19
NOTCH3-204ENST00000597756 URB2Q14146 1524 aaKnown RBP22.42■■□□□ 1.18
NOTCH3-204ENST00000597756 ABCC8Q09428 1581 aa22.29■■□□□ 1.16
NOTCH3-204ENST00000597756 TOPBP1Q92547 1522 aa22.28■■□□□ 1.16
NOTCH3-204ENST00000597756 DNMBPQ6XZF7 1577 aa22.25■■□□□ 1.15
NOTCH3-204ENST00000597756 IFT140Q96RY7 1462 aa22.13■■□□□ 1.13
NOTCH3-204ENST00000597756 CUX1P39880 1505 aa22.12■■□□□ 1.13
NOTCH3-204ENST00000597756 POLA1P09884 1462 aaPredicted RBP22.09■■□□□ 1.13
NOTCH3-204ENST00000597756 TARBP1Q13395 1621 aaKnown RBP22.06■■□□□ 1.12
NOTCH3-204ENST00000597756 ZNF608Q9ULD9 1512 aaPredicted RBP22.03■■□□□ 1.12
NOTCH3-204ENST00000597756 DNAJC5Q9H3Z4 198 aa22.02■■□□□ 1.12
NOTCH3-204ENST00000597756 FGD5Q6ZNL6 1462 aa22.02■■□□□ 1.12
NOTCH3-204ENST00000597756 SOGA1O94964 1423 aa21.99■■□□□ 1.11
NOTCH3-204ENST00000597756 RAD54L2Q9Y4B4 1467 aa21.99■■□□□ 1.11
NOTCH3-204ENST00000597756 WRNQ14191 1432 aaPredicted RBP eCLIP21.97■■□□□ 1.11
NOTCH3-204ENST00000597756 BIVM-ERCC5R4GMW8 1640 aa21.95■■□□□ 1.1
NOTCH3-204ENST00000597756 TOP2BQ02880 1626 aa21.94■■□□□ 1.1
NOTCH3-204ENST00000597756 SYNJ1O43426 1573 aa21.91■■□□□ 1.1
NOTCH3-204ENST00000597756 EIF4G3O43432 1585 aaKnown RBP21.91■■□□□ 1.1
NOTCH3-204ENST00000597756 AQRO60306 1485 aaKnown RBP eCLIP21.91■■□□□ 1.1
NOTCH3-204ENST00000597756 WDR97A6NE52 1622 aa21.88■■□□□ 1.09
NOTCH3-204ENST00000597756 TDRD9Q8NDG6 1382 aaKnown RBP21.87■■□□□ 1.09
NOTCH3-204ENST00000597756 ABCA10Q8WWZ4 1543 aa21.85■■□□□ 1.09
NOTCH3-204ENST00000597756 OSCARQ8IYS5 282 aa21.75■■□□□ 1.07
NOTCH3-204ENST00000597756 ABCA5Q8WWZ7 1642 aa21.74■■□□□ 1.07
NOTCH3-204ENST00000597756 GAPVD1Q14C86 1478 aa21.74■■□□□ 1.07
NOTCH3-204ENST00000597756 GRIN2BQ13224 1484 aa21.73■■□□□ 1.07
NOTCH3-204ENST00000597756 MAGI1Q96QZ7 1491 aaPredicted RBP21.68■■□□□ 1.06
NOTCH3-204ENST00000597756 PBRM1Q86U86 1689 aa21.68■■□□□ 1.06
NOTCH3-204ENST00000597756 SNAPC4Q5SXM2 1469 aa21.67■■□□□ 1.06
NOTCH3-204ENST00000597756 CHD1O14646 1710 aa21.66■■□□□ 1.06
NOTCH3-204ENST00000597756 SYNJ2O15056 1496 aa21.58■■□□□ 1.05
NOTCH3-204ENST00000597756 ERICH3Q5RHP9 1530 aa21.57■■□□□ 1.04
NOTCH3-204ENST00000597756 FBLN2P98095 1184 aa21.57■■□□□ 1.04
NOTCH3-204ENST00000597756 CHMP7Q8WUX9 453 aaPredicted RBP21.56■■□□□ 1.04
NOTCH3-204ENST00000597756 ADAMTS12P58397 1594 aa21.5■■□□□ 1.03
NOTCH3-204ENST00000597756 FHAD1B1AJZ9 1412 aa21.49■■□□□ 1.03
NOTCH3-204ENST00000597756 KIF27Q86VH2 1401 aa21.49■■□□□ 1.03
NOTCH3-204ENST00000597756 IGF1RP08069 1367 aa21.48■■□□□ 1.03
NOTCH3-204ENST00000597756 CLASP1Q7Z460 1538 aa21.45■■□□□ 1.02
NOTCH3-204ENST00000597756 GRIN2AQ12879 1464 aa21.45■■□□□ 1.02
NOTCH3-204ENST00000597756 TRIM41Q8WV44 630 aa21.43■■□□□ 1.02
NOTCH3-204ENST00000597756 NUP160Q12769 1436 aa21.39■■□□□ 1.02
NOTCH3-204ENST00000597756 RIMBP3CA6NJZ7 1639 aa21.38■■□□□ 1.01
NOTCH3-204ENST00000597756 RIMBP3BA6NNM3 1639 aa21.38■■□□□ 1.01
NOTCH3-204ENST00000597756 RIMBP3Q9UFD9 1639 aa21.38■■□□□ 1.01
NOTCH3-204ENST00000597756 ARHGEF11O15085 1522 aa21.37■■□□□ 1.01
NOTCH3-204ENST00000597756 CUL7Q14999 1698 aa21.35■■□□□ 1.01
NOTCH3-204ENST00000597756 CEP170Q5SW79 1584 aa21.35■■□□□ 1.01
NOTCH3-204ENST00000597756 RUSC2Q8N2Y8 1516 aa21.34■■□□□ 1.01
NOTCH3-204ENST00000597756 CARMIL1Q5VZK9 1371 aa21.31■■□□□ 1
NOTCH3-204ENST00000597756 CHIC1Q5VXU3 224 aa21.25■□□□□ 0.99
NOTCH3-204ENST00000597756 SHROOM2Q13796 1616 aa21.23■□□□□ 0.99
NOTCH3-204ENST00000597756 ARAP1Q96P48 1450 aa21.21■□□□□ 0.99
NOTCH3-204ENST00000597756 KIAA0586Q9BVV6 1533 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms