RNA–Protein interactions for RNA: ENST00000597390.5

PRKD2-208, Transcript of protein kinase D2, humanhuman

TSL 1 (best)

Gene PRKD2, Length 1,367 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKD2-208ENST00000597390 NISCHQ9Y2I1 1504 aa32.79■■■□□ 2.84
PRKD2-208ENST00000597390 CCDC180Q9P1Z9 1646 aa29.33■■■□□ 2.29
PRKD2-208ENST00000597390 ABCC9O60706 1549 aa28.93■■■□□ 2.22
PRKD2-208ENST00000597390 RB1CC1Q8TDY2 1594 aa27.74■■■□□ 2.03
PRKD2-208ENST00000597390 DNAJC5BQ9UF47 199 aa27.66■■■□□ 2.02
PRKD2-208ENST00000597390 NACADO15069 1562 aa27.62■■■□□ 2.01
PRKD2-208ENST00000597390 DCAF8L2P0C7V8 631 aa27.48■■□□□ 1.99
PRKD2-208ENST00000597390 MYO15BQ96JP2 1530 aa27.37■■□□□ 1.97
PRKD2-208ENST00000597390 ZCCHC6Q5VYS8 1495 aaKnown RBP27.24■■□□□ 1.95
PRKD2-208ENST00000597390 UNC13AQ9UPW8 1703 aa27.14■■□□□ 1.94
PRKD2-208ENST00000597390 DCAF1Q9Y4B6 1507 aa27.13■■□□□ 1.93
PRKD2-208ENST00000597390 PABPN1Q86U42 306 aaKnown RBP eCLIP26.96■■□□□ 1.91
PRKD2-208ENST00000597390 BICRAQ9NZM4 1560 aa26.9■■□□□ 1.9
PRKD2-208ENST00000597390 SCRIBQ14160 1630 aa26.69■■□□□ 1.86
PRKD2-208ENST00000597390 SHROOM4Q9ULL8 1493 aa26.61■■□□□ 1.85
PRKD2-208ENST00000597390 EIF4G1Q04637 1599 aaKnown RBP26.21■■□□□ 1.79
PRKD2-208ENST00000597390 CC2D2AQ9P2K1 1620 aa26.19■■□□□ 1.78
PRKD2-208ENST00000597390 CECR2Q9BXF3 1484 aa26.04■■□□□ 1.76
PRKD2-208ENST00000597390 DNAJC5Q9H3Z4 198 aa26■■□□□ 1.75
PRKD2-208ENST00000597390 SMARCA4P51532 1647 aa25.52■■□□□ 1.68
PRKD2-208ENST00000597390 NCAPD3P42695 1498 aa25.48■■□□□ 1.67
PRKD2-208ENST00000597390 ATAD2BQ9ULI0 1458 aa25.44■■□□□ 1.66
PRKD2-208ENST00000597390 BAZ1AQ9NRL2 1556 aaPredicted RBP25.44■■□□□ 1.66
PRKD2-208ENST00000597390 SMARCA2P51531 1590 aa25.42■■□□□ 1.66
PRKD2-208ENST00000597390 HMGXB3Q12766 1538 aa25.34■■□□□ 1.65
PRKD2-208ENST00000597390 PEG3Q9GZU2 1588 aa25.28■■□□□ 1.64
PRKD2-208ENST00000597390 MROH2BQ7Z745 1585 aa25.25■■□□□ 1.63
PRKD2-208ENST00000597390 BAZ1BQ9UIG0 1483 aaKnown RBP25.22■■□□□ 1.63
PRKD2-208ENST00000597390 WIZO95785 1651 aa24.99■■□□□ 1.59
PRKD2-208ENST00000597390 ERCC6Q03468 1493 aa24.98■■□□□ 1.59
PRKD2-208ENST00000597390 NESP48681 1621 aa24.95■■□□□ 1.58
PRKD2-208ENST00000597390 CUX2O14529 1486 aa24.91■■□□□ 1.58
PRKD2-208ENST00000597390 LAMC3Q9Y6N6 1575 aa24.88■■□□□ 1.57
PRKD2-208ENST00000597390 RSF1Q96T23 1441 aaPredicted RBP24.85■■□□□ 1.57
PRKD2-208ENST00000597390 CADPSQ9ULU8 1353 aa24.71■■□□□ 1.55
PRKD2-208ENST00000597390 TOP2AP11388 1531 aaKnown RBP24.7■■□□□ 1.54
PRKD2-208ENST00000597390 PDS5BQ9NTI5 1447 aa24.7■■□□□ 1.54
PRKD2-208ENST00000597390 KIF21AQ7Z4S6 1674 aa24.69■■□□□ 1.54
PRKD2-208ENST00000597390 THOC2Q8NI27 1593 aaKnown RBP24.68■■□□□ 1.54
PRKD2-208ENST00000597390 SUPT5HO00267 1087 aaKnown RBP24.51■■□□□ 1.51
PRKD2-208ENST00000597390 TRIM41Q8WV44 630 aa24.51■■□□□ 1.51
PRKD2-208ENST00000597390 CFTRP13569 1480 aa24.5■■□□□ 1.51
PRKD2-208ENST00000597390 MRC2Q9UBG0 1479 aa24.46■■□□□ 1.51
PRKD2-208ENST00000597390 CEP164Q9UPV0 1460 aa24.44■■□□□ 1.5
PRKD2-208ENST00000597390 FANCD2Q9BXW9 1451 aa24.43■■□□□ 1.5
PRKD2-208ENST00000597390 WDR62O43379 1518 aa24.41■■□□□ 1.5
PRKD2-208ENST00000597390 CCDC88BA6NC98 1476 aa24.39■■□□□ 1.5
PRKD2-208ENST00000597390 PRDM2Q13029 1718 aa24.37■■□□□ 1.49
PRKD2-208ENST00000597390 URB2Q14146 1524 aaKnown RBP24.21■■□□□ 1.47
PRKD2-208ENST00000597390 TOPBP1Q92547 1522 aa24.01■■□□□ 1.43
PRKD2-208ENST00000597390 ABCC8Q09428 1581 aa24.01■■□□□ 1.43
PRKD2-208ENST00000597390 DNMBPQ6XZF7 1577 aa23.97■■□□□ 1.43
PRKD2-208ENST00000597390 IFT140Q96RY7 1462 aa23.94■■□□□ 1.42
PRKD2-208ENST00000597390 ZNF608Q9ULD9 1512 aaPredicted RBP23.84■■□□□ 1.41
PRKD2-208ENST00000597390 TARBP1Q13395 1621 aaKnown RBP23.79■■□□□ 1.4
PRKD2-208ENST00000597390 POLA1P09884 1462 aaPredicted RBP23.78■■□□□ 1.4
PRKD2-208ENST00000597390 EIF4G3O43432 1585 aaKnown RBP23.77■■□□□ 1.4
PRKD2-208ENST00000597390 OSCARQ8IYS5 282 aa23.73■■□□□ 1.39
PRKD2-208ENST00000597390 CUX1P39880 1505 aa23.71■■□□□ 1.39
PRKD2-208ENST00000597390 FGD5Q6ZNL6 1462 aa23.68■■□□□ 1.38
PRKD2-208ENST00000597390 RAD54L2Q9Y4B4 1467 aa23.68■■□□□ 1.38
PRKD2-208ENST00000597390 SOGA1O94964 1423 aa23.67■■□□□ 1.38
PRKD2-208ENST00000597390 AQRO60306 1485 aaKnown RBP eCLIP23.66■■□□□ 1.381e-7■■■□□ 17
PRKD2-208ENST00000597390 WDR97A6NE52 1622 aa23.61■■□□□ 1.37
PRKD2-208ENST00000597390 TDRD9Q8NDG6 1382 aaKnown RBP23.56■■□□□ 1.36
PRKD2-208ENST00000597390 CHD1O14646 1710 aa23.54■■□□□ 1.36
PRKD2-208ENST00000597390 BIVM-ERCC5R4GMW8 1640 aa23.46■■□□□ 1.35
PRKD2-208ENST00000597390 SNAPC4Q5SXM2 1469 aa23.45■■□□□ 1.35
PRKD2-208ENST00000597390 RIMBP3CA6NJZ7 1639 aa23.45■■□□□ 1.34
PRKD2-208ENST00000597390 RIMBP3BA6NNM3 1639 aa23.45■■□□□ 1.34
PRKD2-208ENST00000597390 RIMBP3Q9UFD9 1639 aa23.45■■□□□ 1.34
PRKD2-208ENST00000597390 GRIN2BQ13224 1484 aa23.45■■□□□ 1.34
PRKD2-208ENST00000597390 ABCA10Q8WWZ4 1543 aa23.44■■□□□ 1.34
PRKD2-208ENST00000597390 TOP2BQ02880 1626 aa23.44■■□□□ 1.34
PRKD2-208ENST00000597390 WRNQ14191 1432 aaPredicted RBP eCLIP23.44■■□□□ 1.34
PRKD2-208ENST00000597390 FBLN2P98095 1184 aa23.43■■□□□ 1.34
PRKD2-208ENST00000597390 MAGI1Q96QZ7 1491 aaPredicted RBP23.42■■□□□ 1.34
PRKD2-208ENST00000597390 PBRM1Q86U86 1689 aa23.41■■□□□ 1.34
PRKD2-208ENST00000597390 SYNJ1O43426 1573 aa23.41■■□□□ 1.34
PRKD2-208ENST00000597390 GAPVD1Q14C86 1478 aa23.41■■□□□ 1.34
PRKD2-208ENST00000597390 ABCA5Q8WWZ7 1642 aa23.39■■□□□ 1.34
PRKD2-208ENST00000597390 ARHGEF11O15085 1522 aa23.37■■□□□ 1.33
PRKD2-208ENST00000597390 SYNJ2O15056 1496 aa23.33■■□□□ 1.33
PRKD2-208ENST00000597390 CHMP7Q8WUX9 453 aaPredicted RBP23.33■■□□□ 1.33
PRKD2-208ENST00000597390 CLASP1Q7Z460 1538 aa23.27■■□□□ 1.31
PRKD2-208ENST00000597390 TRHP20396 242 aaPredicted RBP23.27■■□□□ 1.31
PRKD2-208ENST00000597390 CYB5RLQ6IPT4 315 aa23.24■■□□□ 1.31
PRKD2-208ENST00000597390 AEBP2Q6ZN18 517 aaPredicted RBP23.23■■□□□ 1.31
PRKD2-208ENST00000597390 CHIC1Q5VXU3 224 aa23.21■■□□□ 1.31
PRKD2-208ENST00000597390 ADAMTS12P58397 1594 aa23.19■■□□□ 1.3
PRKD2-208ENST00000597390 ERICH3Q5RHP9 1530 aa23.16■■□□□ 1.3
PRKD2-208ENST00000597390 ARAP1Q96P48 1450 aa23.15■■□□□ 1.3
PRKD2-208ENST00000597390 GRIN2AQ12879 1464 aa23.14■■□□□ 1.29
PRKD2-208ENST00000597390 FHAD1B1AJZ9 1412 aa23.12■■□□□ 1.29
PRKD2-208ENST00000597390 CEP170Q5SW79 1584 aa23.05■■□□□ 1.28
PRKD2-208ENST00000597390 NUP160Q12769 1436 aa23.05■■□□□ 1.28
PRKD2-208ENST00000597390 KIF27Q86VH2 1401 aa22.97■■□□□ 1.27
PRKD2-208ENST00000597390 SHROOM2Q13796 1616 aa22.94■■□□□ 1.26
PRKD2-208ENST00000597390 CUL7Q14999 1698 aa22.91■■□□□ 1.26
PRKD2-208ENST00000597390 IGF1RP08069 1367 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 136.3 ms