RNA–Protein interactions for RNA: ENST00000597088.1

PRKD2-207, Transcript of protein kinase D2, humanhuman

TSL 2

Gene PRKD2, Length 855 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKD2-207ENST00000597088 NISCHQ9Y2I1 1504 aa58.82■■■■■ 7.01
PRKD2-207ENST00000597088 CCDC180Q9P1Z9 1646 aa52.28■■■■■ 5.96
PRKD2-207ENST00000597088 ABCC9O60706 1549 aa51■■■■■ 5.75
PRKD2-207ENST00000597088 RB1CC1Q8TDY2 1594 aa49.11■■■■■ 5.45
PRKD2-207ENST00000597088 NACADO15069 1562 aa49.07■■■■■ 5.45
PRKD2-207ENST00000597088 ZCCHC6Q5VYS8 1495 aaKnown RBP49.04■■■■■ 5.44
PRKD2-207ENST00000597088 DCAF8L2P0C7V8 631 aa49.02■■■■■ 5.44
PRKD2-207ENST00000597088 MYO15BQ96JP2 1530 aa48.79■■■■■ 5.4
PRKD2-207ENST00000597088 DCAF1Q9Y4B6 1507 aa48.65■■■■■ 5.38
PRKD2-207ENST00000597088 UNC13AQ9UPW8 1703 aa48.1■■■■■ 5.29
PRKD2-207ENST00000597088 SCRIBQ14160 1630 aa47.74■■■■■ 5.23
PRKD2-207ENST00000597088 BICRAQ9NZM4 1560 aa47.65■■■■■ 5.22
PRKD2-207ENST00000597088 PABPN1Q86U42 306 aaKnown RBP eCLIP47.64■■■■■ 5.22
PRKD2-207ENST00000597088 SHROOM4Q9ULL8 1493 aa47.1■■■■■ 5.13
PRKD2-207ENST00000597088 DNAJC5BQ9UF47 199 aa46.64■■■■■ 5.06
PRKD2-207ENST00000597088 EIF4G1Q04637 1599 aaKnown RBP46.37■■■■■ 5.01
PRKD2-207ENST00000597088 CC2D2AQ9P2K1 1620 aa46.16■■■■■ 4.98
PRKD2-207ENST00000597088 CECR2Q9BXF3 1484 aa45.81■■■■■ 4.92
PRKD2-207ENST00000597088 SMARCA4P51532 1647 aa45.65■■■■■ 4.9
PRKD2-207ENST00000597088 BAZ1AQ9NRL2 1556 aaPredicted RBP45.58■■■■■ 4.89
PRKD2-207ENST00000597088 MROH2BQ7Z745 1585 aa45.35■■■■■ 4.85
PRKD2-207ENST00000597088 ATAD2BQ9ULI0 1458 aa45.32■■■■■ 4.85
PRKD2-207ENST00000597088 SMARCA2P51531 1590 aa45.28■■■■■ 4.84
PRKD2-207ENST00000597088 NCAPD3P42695 1498 aa45.25■■■■■ 4.83
PRKD2-207ENST00000597088 PEG3Q9GZU2 1588 aa45.17■■■■■ 4.82
PRKD2-207ENST00000597088 HMGXB3Q12766 1538 aa45.09■■■■■ 4.81
PRKD2-207ENST00000597088 BAZ1BQ9UIG0 1483 aaKnown RBP44.97■■■■■ 4.79
PRKD2-207ENST00000597088 WIZO95785 1651 aa44.9■■■■■ 4.78
PRKD2-207ENST00000597088 RSF1Q96T23 1441 aaPredicted RBP44.84■■■■■ 4.77
PRKD2-207ENST00000597088 TOP2AP11388 1531 aaKnown RBP44.41■■■■■ 4.7
PRKD2-207ENST00000597088 NESP48681 1621 aa44.18■■■■■ 4.66
PRKD2-207ENST00000597088 LAMC3Q9Y6N6 1575 aa44.08■■■■■ 4.65
PRKD2-207ENST00000597088 ERCC6Q03468 1493 aa43.94■■■■■ 4.62
PRKD2-207ENST00000597088 CADPSQ9ULU8 1353 aa43.92■■■■■ 4.62
PRKD2-207ENST00000597088 CCDC88BA6NC98 1476 aa43.85■■■■■ 4.61
PRKD2-207ENST00000597088 SUPT5HO00267 1087 aaKnown RBP43.78■■■■■ 4.6
PRKD2-207ENST00000597088 PDS5BQ9NTI5 1447 aa43.73■■■■■ 4.59
PRKD2-207ENST00000597088 CFTRP13569 1480 aa43.72■■■■■ 4.59
PRKD2-207ENST00000597088 KIF21AQ7Z4S6 1674 aa43.72■■■■■ 4.59
PRKD2-207ENST00000597088 THOC2Q8NI27 1593 aaKnown RBP43.52■■■■■ 4.56
PRKD2-207ENST00000597088 PRDM2Q13029 1718 aa43.51■■■■■ 4.56
PRKD2-207ENST00000597088 FANCD2Q9BXW9 1451 aa43.47■■■■■ 4.55
PRKD2-207ENST00000597088 CUX2O14529 1486 aa43.41■■■■■ 4.54
PRKD2-207ENST00000597088 CEP164Q9UPV0 1460 aa43.41■■■■■ 4.54
PRKD2-207ENST00000597088 MRC2Q9UBG0 1479 aa43.32■■■■■ 4.53
PRKD2-207ENST00000597088 WDR62O43379 1518 aa43.19■■■■■ 4.5
PRKD2-207ENST00000597088 URB2Q14146 1524 aaKnown RBP43.05■■■■■ 4.48
PRKD2-207ENST00000597088 TOPBP1Q92547 1522 aa42.81■■■■■ 4.44
PRKD2-207ENST00000597088 DNMBPQ6XZF7 1577 aa42.78■■■■■ 4.44
PRKD2-207ENST00000597088 ABCC8Q09428 1581 aa42.75■■■■■ 4.43
PRKD2-207ENST00000597088 CUX1P39880 1505 aa42.55■■■■■ 4.4
PRKD2-207ENST00000597088 IFT140Q96RY7 1462 aa42.47■■■■■ 4.39
PRKD2-207ENST00000597088 POLA1P09884 1462 aaPredicted RBP42.44■■■■■ 4.38
PRKD2-207ENST00000597088 FGD5Q6ZNL6 1462 aa42.37■■■■■ 4.37
PRKD2-207ENST00000597088 TARBP1Q13395 1621 aaKnown RBP42.35■■■■■ 4.37
PRKD2-207ENST00000597088 ZNF608Q9ULD9 1512 aaPredicted RBP42.3■■■■■ 4.36
PRKD2-207ENST00000597088 WRNQ14191 1432 aaPredicted RBP eCLIP42.28■■■■■ 4.36
PRKD2-207ENST00000597088 RAD54L2Q9Y4B4 1467 aa42.26■■■■■ 4.36
PRKD2-207ENST00000597088 SYNJ1O43426 1573 aa42.23■■■■■ 4.35
PRKD2-207ENST00000597088 SOGA1O94964 1423 aa42.23■■■■■ 4.35
PRKD2-207ENST00000597088 BIVM-ERCC5R4GMW8 1640 aa42.23■■■■■ 4.35
PRKD2-207ENST00000597088 TOP2BQ02880 1626 aa42.21■■■■■ 4.35
PRKD2-207ENST00000597088 EIF4G3O43432 1585 aaKnown RBP42.18■■■■■ 4.34
PRKD2-207ENST00000597088 WDR97A6NE52 1622 aa42.07■■■■■ 4.33
PRKD2-207ENST00000597088 AQRO60306 1485 aaKnown RBP eCLIP42.06■■■■■ 4.322e-6■■■□□ 15.2
PRKD2-207ENST00000597088 TDRD9Q8NDG6 1382 aaKnown RBP41.99■■■■■ 4.31
PRKD2-207ENST00000597088 ABCA10Q8WWZ4 1543 aa41.95■■■■■ 4.31
PRKD2-207ENST00000597088 DNAJC5Q9H3Z4 198 aa41.86■■■■■ 4.29
PRKD2-207ENST00000597088 ABCA5Q8WWZ7 1642 aa41.82■■■■■ 4.29
PRKD2-207ENST00000597088 GAPVD1Q14C86 1478 aa41.77■■■■■ 4.28
PRKD2-207ENST00000597088 PBRM1Q86U86 1689 aa41.76■■■■■ 4.28
PRKD2-207ENST00000597088 GRIN2BQ13224 1484 aa41.74■■■■■ 4.27
PRKD2-207ENST00000597088 SNAPC4Q5SXM2 1469 aa41.71■■■■■ 4.27
PRKD2-207ENST00000597088 CHD1O14646 1710 aa41.65■■■■■ 4.26
PRKD2-207ENST00000597088 MAGI1Q96QZ7 1491 aaPredicted RBP41.63■■■■■ 4.25
PRKD2-207ENST00000597088 OSCARQ8IYS5 282 aa41.57■■■■■ 4.25
PRKD2-207ENST00000597088 FBLN2P98095 1184 aa41.49■■■■■ 4.23
PRKD2-207ENST00000597088 SYNJ2O15056 1496 aa41.46■■■■■ 4.23
PRKD2-207ENST00000597088 ERICH3Q5RHP9 1530 aa41.45■■■■■ 4.23
PRKD2-207ENST00000597088 ADAMTS12P58397 1594 aa41.42■■■■■ 4.22
PRKD2-207ENST00000597088 CHMP7Q8WUX9 453 aaPredicted RBP41.38■■■■■ 4.21
PRKD2-207ENST00000597088 KIF27Q86VH2 1401 aa41.37■■■■■ 4.21
PRKD2-207ENST00000597088 TRIM41Q8WV44 630 aa41.32■■■■■ 4.21
PRKD2-207ENST00000597088 FHAD1B1AJZ9 1412 aa41.28■■■■■ 4.2
PRKD2-207ENST00000597088 GRIN2AQ12879 1464 aa41.23■■■■■ 4.19
PRKD2-207ENST00000597088 IGF1RP08069 1367 aa41.17■■■■■ 4.18
PRKD2-207ENST00000597088 CLASP1Q7Z460 1538 aa41.16■■■■■ 4.18
PRKD2-207ENST00000597088 CUL7Q14999 1698 aa41.13■■■■■ 4.18
PRKD2-207ENST00000597088 RUSC2Q8N2Y8 1516 aa41.08■■■■■ 4.17
PRKD2-207ENST00000597088 CEP170Q5SW79 1584 aa41.06■■■■■ 4.16
PRKD2-207ENST00000597088 NUP160Q12769 1436 aa41.02■■■■■ 4.16
PRKD2-207ENST00000597088 RIMBP3CA6NJZ7 1639 aa41.01■■■■■ 4.16
PRKD2-207ENST00000597088 RIMBP3BA6NNM3 1639 aa41.01■■■■■ 4.16
PRKD2-207ENST00000597088 RIMBP3Q9UFD9 1639 aa41.01■■■■■ 4.16
PRKD2-207ENST00000597088 ARHGEF11O15085 1522 aa40.99■■■■■ 4.15
PRKD2-207ENST00000597088 CARMIL1Q5VZK9 1371 aa40.93■■■■■ 4.14
PRKD2-207ENST00000597088 CHIC1Q5VXU3 224 aa40.91■■■■■ 4.14
PRKD2-207ENST00000597088 SHROOM2Q13796 1616 aa40.75■■■■■ 4.11
PRKD2-207ENST00000597088 RAPGEF2Q9Y4G8 1499 aa40.73■■■■■ 4.11
PRKD2-207ENST00000597088 ARAP1Q96P48 1450 aa40.68■■■■■ 4.1
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms