RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 NISCHQ9Y2I1 1504 aa34.19■■■■□ 3.06
VRK3-212ENST00000596814 CCDC180Q9P1Z9 1646 aa30.1■■■□□ 2.41
VRK3-212ENST00000596814 ABCC9O60706 1549 aa28.71■■■□□ 2.19
VRK3-212ENST00000596814 ZCCHC6Q5VYS8 1495 aaKnown RBP28.66■■■□□ 2.18
VRK3-212ENST00000596814 DCAF1Q9Y4B6 1507 aa28.32■■■□□ 2.12
VRK3-212ENST00000596814 DCAF8L2P0C7V8 631 aa28.24■■■□□ 2.11
VRK3-212ENST00000596814 MYO15BQ96JP2 1530 aa28.14■■■□□ 2.1
VRK3-212ENST00000596814 NACADO15069 1562 aa28.09■■■□□ 2.09
VRK3-212ENST00000596814 RB1CC1Q8TDY2 1594 aa27.94■■■□□ 2.06
VRK3-212ENST00000596814 SCRIBQ14160 1630 aa27.55■■■□□ 2
VRK3-212ENST00000596814 SHROOM4Q9ULL8 1493 aa27.51■■□□□ 1.99
VRK3-212ENST00000596814 UNC13AQ9UPW8 1703 aa27.38■■□□□ 1.97
VRK3-212ENST00000596814 BICRAQ9NZM4 1560 aa27.08■■□□□ 1.92
VRK3-212ENST00000596814 PABPN1Q86U42 306 aaKnown RBP eCLIP26.93■■□□□ 1.9
VRK3-212ENST00000596814 CECR2Q9BXF3 1484 aa26.55■■□□□ 1.84
VRK3-212ENST00000596814 BAZ1AQ9NRL2 1556 aaPredicted RBP26.46■■□□□ 1.83
VRK3-212ENST00000596814 SMARCA4P51532 1647 aa26.4■■□□□ 1.82
VRK3-212ENST00000596814 MROH2BQ7Z745 1585 aa26.38■■□□□ 1.81
VRK3-212ENST00000596814 RSF1Q96T23 1441 aaPredicted RBP26.33■■□□□ 1.81
VRK3-212ENST00000596814 EIF4G1Q04637 1599 aaKnown RBP26.3■■□□□ 1.8
VRK3-212ENST00000596814 SUPT5HO00267 1087 aaKnown RBP26.24■■□□□ 1.79
VRK3-212ENST00000596814 WIZO95785 1651 aa26.16■■□□□ 1.78
VRK3-212ENST00000596814 PEG3Q9GZU2 1588 aa26.11■■□□□ 1.77
VRK3-212ENST00000596814 SMARCA2P51531 1590 aa26.05■■□□□ 1.76
VRK3-212ENST00000596814 ATAD2BQ9ULI0 1458 aa26.03■■□□□ 1.76
VRK3-212ENST00000596814 CC2D2AQ9P2K1 1620 aa26.02■■□□□ 1.76
VRK3-212ENST00000596814 TOP2AP11388 1531 aaKnown RBP25.91■■□□□ 1.74
VRK3-212ENST00000596814 BAZ1BQ9UIG0 1483 aaKnown RBP25.88■■□□□ 1.73
VRK3-212ENST00000596814 NCAPD3P42695 1498 aa25.88■■□□□ 1.73
VRK3-212ENST00000596814 HMGXB3Q12766 1538 aa25.86■■□□□ 1.73
VRK3-212ENST00000596814 DNAJC5BQ9UF47 199 aa25.6■■□□□ 1.69
VRK3-212ENST00000596814 CCDC88BA6NC98 1476 aa25.58■■□□□ 1.68
VRK3-212ENST00000596814 CFTRP13569 1480 aa25.19■■□□□ 1.62
VRK3-212ENST00000596814 CADPSQ9ULU8 1353 aa25.17■■□□□ 1.62
VRK3-212ENST00000596814 PRDM2Q13029 1718 aa25.15■■□□□ 1.62
VRK3-212ENST00000596814 LAMC3Q9Y6N6 1575 aa25.12■■□□□ 1.61
VRK3-212ENST00000596814 NESP48681 1621 aa25.07■■□□□ 1.6
VRK3-212ENST00000596814 ABCC8Q09428 1581 aa24.92■■□□□ 1.58
VRK3-212ENST00000596814 FANCD2Q9BXW9 1451 aa24.91■■□□□ 1.58
VRK3-212ENST00000596814 CHIC1Q5VXU3 224 aa24.91■■□□□ 1.58
VRK3-212ENST00000596814 PDS5BQ9NTI5 1447 aa24.89■■□□□ 1.58
VRK3-212ENST00000596814 KIF21AQ7Z4S6 1674 aa24.84■■□□□ 1.57
VRK3-212ENST00000596814 CEP164Q9UPV0 1460 aa24.82■■□□□ 1.56
VRK3-212ENST00000596814 WRNQ14191 1432 aaPredicted RBP eCLIP24.82■■□□□ 1.56
VRK3-212ENST00000596814 SYNJ1O43426 1573 aa24.75■■□□□ 1.55
VRK3-212ENST00000596814 TRIM41Q8WV44 630 aa24.73■■□□□ 1.55
VRK3-212ENST00000596814 CUX1P39880 1505 aa24.71■■□□□ 1.55
VRK3-212ENST00000596814 BIVM-ERCC5R4GMW8 1640 aa24.71■■□□□ 1.55
VRK3-212ENST00000596814 TOP2BQ02880 1626 aa24.7■■□□□ 1.54
VRK3-212ENST00000596814 ERCC6Q03468 1493 aa24.69■■□□□ 1.54
VRK3-212ENST00000596814 DNMBPQ6XZF7 1577 aa24.65■■□□□ 1.54
VRK3-212ENST00000596814 URB2Q14146 1524 aaKnown RBP24.62■■□□□ 1.53
VRK3-212ENST00000596814 MRC2Q9UBG0 1479 aa24.62■■□□□ 1.53
VRK3-212ENST00000596814 TOPBP1Q92547 1522 aa24.6■■□□□ 1.53
VRK3-212ENST00000596814 THOC2Q8NI27 1593 aaKnown RBP24.55■■□□□ 1.52
VRK3-212ENST00000596814 WDR62O43379 1518 aa24.52■■□□□ 1.52
VRK3-212ENST00000596814 FGD5Q6ZNL6 1462 aa24.5■■□□□ 1.51
VRK3-212ENST00000596814 POLA1P09884 1462 aaPredicted RBP24.45■■□□□ 1.5
VRK3-212ENST00000596814 SOGA1O94964 1423 aa24.33■■□□□ 1.49
VRK3-212ENST00000596814 RAD54L2Q9Y4B4 1467 aa24.33■■□□□ 1.49
VRK3-212ENST00000596814 WDR97A6NE52 1622 aa24.31■■□□□ 1.48
VRK3-212ENST00000596814 CUX2O14529 1486 aa24.3■■□□□ 1.48
VRK3-212ENST00000596814 ABCA10Q8WWZ4 1543 aa24.29■■□□□ 1.48
VRK3-212ENST00000596814 TARBP1Q13395 1621 aaKnown RBP24.28■■□□□ 1.48
VRK3-212ENST00000596814 EEA1Q15075 1411 aa24.27■■□□□ 1.48
VRK3-212ENST00000596814 RUSC2Q8N2Y8 1516 aa24.26■■□□□ 1.47
VRK3-212ENST00000596814 IFT140Q96RY7 1462 aa24.25■■□□□ 1.47
VRK3-212ENST00000596814 KIF27Q86VH2 1401 aa24.24■■□□□ 1.47
VRK3-212ENST00000596814 FAM9AQ8IZU1 332 aaPredicted RBP24.23■■□□□ 1.47
VRK3-212ENST00000596814 ABCA5Q8WWZ7 1642 aa24.16■■□□□ 1.46
VRK3-212ENST00000596814 TDRD9Q8NDG6 1382 aaKnown RBP24.11■■□□□ 1.45
VRK3-212ENST00000596814 CSRNP3Q8WYN3 585 aa24.09■■□□□ 1.45
VRK3-212ENST00000596814 ZNF608Q9ULD9 1512 aaPredicted RBP24.09■■□□□ 1.45
VRK3-212ENST00000596814 GAPVD1Q14C86 1478 aa24.09■■□□□ 1.45
VRK3-212ENST00000596814 EIF4G3O43432 1585 aaKnown RBP24.07■■□□□ 1.44
VRK3-212ENST00000596814 PBRM1Q86U86 1689 aa24.05■■□□□ 1.44
VRK3-212ENST00000596814 AQRO60306 1485 aaKnown RBP eCLIP24.03■■□□□ 1.445e-7■■■■■ 54.7
VRK3-212ENST00000596814 ERICH3Q5RHP9 1530 aa24.02■■□□□ 1.44
VRK3-212ENST00000596814 IGF1RP08069 1367 aa24.01■■□□□ 1.43
VRK3-212ENST00000596814 KIF21BO75037 1637 aa24■■□□□ 1.43
VRK3-212ENST00000596814 CUL7Q14999 1698 aa23.98■■□□□ 1.43
VRK3-212ENST00000596814 GRIN2BQ13224 1484 aa23.97■■□□□ 1.43
VRK3-212ENST00000596814 PRXQ9BXM0 1461 aa23.96■■□□□ 1.43
VRK3-212ENST00000596814 GOLGA3Q08378 1498 aa23.91■■□□□ 1.42
VRK3-212ENST00000596814 CARMIL1Q5VZK9 1371 aa23.9■■□□□ 1.42
VRK3-212ENST00000596814 LOC105371045A0A1W2PR82 267 aa23.9■■□□□ 1.42
VRK3-212ENST00000596814 RAPGEF2Q9Y4G8 1499 aa23.88■■□□□ 1.41
VRK3-212ENST00000596814 ADAMTS12P58397 1594 aa23.88■■□□□ 1.41
VRK3-212ENST00000596814 EHMT2Q96KQ7 1210 aa23.87■■□□□ 1.41
VRK3-212ENST00000596814 SNAPC4Q5SXM2 1469 aa23.86■■□□□ 1.41
VRK3-212ENST00000596814 MAGI1Q96QZ7 1491 aaPredicted RBP23.84■■□□□ 1.41
VRK3-212ENST00000596814 FHAD1B1AJZ9 1412 aa23.82■■□□□ 1.4
VRK3-212ENST00000596814 UBTFP17480 764 aaKnown RBP23.74■■□□□ 1.39
VRK3-212ENST00000596814 SYNJ2O15056 1496 aa23.73■■□□□ 1.39
VRK3-212ENST00000596814 TNIKQ9UKE5 1360 aa23.71■■□□□ 1.39
VRK3-212ENST00000596814 GRIN2AQ12879 1464 aa23.68■■□□□ 1.38
VRK3-212ENST00000596814 CTTNBP2Q8WZ74 1663 aa23.66■■□□□ 1.38
VRK3-212ENST00000596814 CHMP7Q8WUX9 453 aaPredicted RBP23.63■■□□□ 1.37
VRK3-212ENST00000596814 CHD1O14646 1710 aa23.63■■□□□ 1.37
VRK3-212ENST00000596814 FBLN2P98095 1184 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms