RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 NISCHQ9Y2I1 1504 aa34.43■■■■□ 3.1
SHKBP1-211ENST00000595945 CCDC180Q9P1Z9 1646 aa30.3■■■□□ 2.44
SHKBP1-211ENST00000595945 ZCCHC6Q5VYS8 1495 aaKnown RBP28.87■■■□□ 2.21
SHKBP1-211ENST00000595945 ABCC9O60706 1549 aa28.77■■■□□ 2.2
SHKBP1-211ENST00000595945 DCAF1Q9Y4B6 1507 aa28.55■■■□□ 2.16
SHKBP1-211ENST00000595945 MYO15BQ96JP2 1530 aa28.37■■■□□ 2.13
SHKBP1-211ENST00000595945 DCAF8L2P0C7V8 631 aa28.27■■■□□ 2.12
SHKBP1-211ENST00000595945 NACADO15069 1562 aa28.24■■■□□ 2.11
SHKBP1-211ENST00000595945 RB1CC1Q8TDY2 1594 aa28.06■■■□□ 2.08
SHKBP1-211ENST00000595945 SCRIBQ14160 1630 aa27.67■■■□□ 2.02
SHKBP1-211ENST00000595945 SHROOM4Q9ULL8 1493 aa27.63■■■□□ 2.01
SHKBP1-211ENST00000595945 UNC13AQ9UPW8 1703 aa27.58■■■□□ 2.01
SHKBP1-211ENST00000595945 BICRAQ9NZM4 1560 aa27.25■■□□□ 1.95
SHKBP1-211ENST00000595945 PABPN1Q86U42 306 aaKnown RBP eCLIP26.99■■□□□ 1.91
SHKBP1-211ENST00000595945 CECR2Q9BXF3 1484 aa26.74■■□□□ 1.87
SHKBP1-211ENST00000595945 BAZ1AQ9NRL2 1556 aaPredicted RBP26.62■■□□□ 1.85
SHKBP1-211ENST00000595945 SMARCA4P51532 1647 aa26.57■■□□□ 1.84
SHKBP1-211ENST00000595945 MROH2BQ7Z745 1585 aa26.56■■□□□ 1.84
SHKBP1-211ENST00000595945 RSF1Q96T23 1441 aaPredicted RBP26.54■■□□□ 1.84
SHKBP1-211ENST00000595945 EIF4G1Q04637 1599 aaKnown RBP26.41■■□□□ 1.82
SHKBP1-211ENST00000595945 SUPT5HO00267 1087 aaKnown RBP26.38■■□□□ 1.81
SHKBP1-211ENST00000595945 WIZO95785 1651 aa26.34■■□□□ 1.81
SHKBP1-211ENST00000595945 PEG3Q9GZU2 1588 aa26.31■■□□□ 1.8
SHKBP1-211ENST00000595945 ATAD2BQ9ULI0 1458 aa26.18■■□□□ 1.78
SHKBP1-211ENST00000595945 SMARCA2P51531 1590 aa26.18■■□□□ 1.78
SHKBP1-211ENST00000595945 CC2D2AQ9P2K1 1620 aa26.1■■□□□ 1.77
SHKBP1-211ENST00000595945 TOP2AP11388 1531 aaKnown RBP26.09■■□□□ 1.77
SHKBP1-211ENST00000595945 NCAPD3P42695 1498 aa26.04■■□□□ 1.76
SHKBP1-211ENST00000595945 HMGXB3Q12766 1538 aa26.01■■□□□ 1.75
SHKBP1-211ENST00000595945 BAZ1BQ9UIG0 1483 aaKnown RBP25.98■■□□□ 1.75
SHKBP1-211ENST00000595945 CCDC88BA6NC98 1476 aa25.76■■□□□ 1.71
SHKBP1-211ENST00000595945 DNAJC5BQ9UF47 199 aa25.67■■□□□ 1.7
SHKBP1-211ENST00000595945 PRDM2Q13029 1718 aa25.34■■□□□ 1.65
SHKBP1-211ENST00000595945 CFTRP13569 1480 aa25.34■■□□□ 1.65
SHKBP1-211ENST00000595945 CADPSQ9ULU8 1353 aa25.3■■□□□ 1.64
SHKBP1-211ENST00000595945 LAMC3Q9Y6N6 1575 aa25.22■■□□□ 1.63
SHKBP1-211ENST00000595945 CHIC1Q5VXU3 224 aa25.18■■□□□ 1.62
SHKBP1-211ENST00000595945 NESP48681 1621 aa25.17■■□□□ 1.62
SHKBP1-211ENST00000595945 ABCC8Q09428 1581 aa25.07■■□□□ 1.6
SHKBP1-211ENST00000595945 FANCD2Q9BXW9 1451 aa25.02■■□□□ 1.6
SHKBP1-211ENST00000595945 WRNQ14191 1432 aaPredicted RBP eCLIP24.96■■□□□ 1.59
SHKBP1-211ENST00000595945 PDS5BQ9NTI5 1447 aa24.96■■□□□ 1.59
SHKBP1-211ENST00000595945 KIF21AQ7Z4S6 1674 aa24.96■■□□□ 1.59
SHKBP1-211ENST00000595945 SYNJ1O43426 1573 aa24.93■■□□□ 1.58
SHKBP1-211ENST00000595945 BIVM-ERCC5R4GMW8 1640 aa24.91■■□□□ 1.58
SHKBP1-211ENST00000595945 CEP164Q9UPV0 1460 aa24.89■■□□□ 1.58
SHKBP1-211ENST00000595945 TOP2BQ02880 1626 aa24.89■■□□□ 1.57
SHKBP1-211ENST00000595945 CUX1P39880 1505 aa24.87■■□□□ 1.57
SHKBP1-211ENST00000595945 TRIM41Q8WV44 630 aa24.87■■□□□ 1.57
SHKBP1-211ENST00000595945 DNMBPQ6XZF7 1577 aa24.79■■□□□ 1.56
SHKBP1-211ENST00000595945 URB2Q14146 1524 aaKnown RBP24.76■■□□□ 1.55
SHKBP1-211ENST00000595945 TOPBP1Q92547 1522 aa24.73■■□□□ 1.55
SHKBP1-211ENST00000595945 MRC2Q9UBG0 1479 aa24.7■■□□□ 1.55
SHKBP1-211ENST00000595945 ERCC6Q03468 1493 aa24.68■■□□□ 1.54
SHKBP1-211ENST00000595945 THOC2Q8NI27 1593 aaKnown RBP24.66■■□□□ 1.54
SHKBP1-211ENST00000595945 WDR62O43379 1518 aa24.63■■□□□ 1.53
SHKBP1-211ENST00000595945 FGD5Q6ZNL6 1462 aa24.63■■□□□ 1.53
SHKBP1-211ENST00000595945 POLA1P09884 1462 aaPredicted RBP24.58■■□□□ 1.52
SHKBP1-211ENST00000595945 SOGA1O94964 1423 aa24.51■■□□□ 1.51
SHKBP1-211ENST00000595945 WDR97A6NE52 1622 aa24.48■■□□□ 1.51
SHKBP1-211ENST00000595945 EEA1Q15075 1411 aa24.46■■□□□ 1.51
SHKBP1-211ENST00000595945 RUSC2Q8N2Y8 1516 aa24.45■■□□□ 1.51
SHKBP1-211ENST00000595945 RAD54L2Q9Y4B4 1467 aa24.45■■□□□ 1.51
SHKBP1-211ENST00000595945 TARBP1Q13395 1621 aaKnown RBP24.45■■□□□ 1.5
SHKBP1-211ENST00000595945 ABCA10Q8WWZ4 1543 aa24.45■■□□□ 1.5
SHKBP1-211ENST00000595945 CUX2O14529 1486 aa24.44■■□□□ 1.5
SHKBP1-211ENST00000595945 KIF27Q86VH2 1401 aa24.36■■□□□ 1.49
SHKBP1-211ENST00000595945 IFT140Q96RY7 1462 aa24.35■■□□□ 1.49
SHKBP1-211ENST00000595945 FAM9AQ8IZU1 332 aaPredicted RBP24.34■■□□□ 1.49
SHKBP1-211ENST00000595945 ABCA5Q8WWZ7 1642 aa24.32■■□□□ 1.48
SHKBP1-211ENST00000595945 CSRNP3Q8WYN3 585 aa24.27■■□□□ 1.48
SHKBP1-211ENST00000595945 KIF21BO75037 1637 aa24.21■■□□□ 1.47
SHKBP1-211ENST00000595945 TDRD9Q8NDG6 1382 aaKnown RBP24.2■■□□□ 1.46
SHKBP1-211ENST00000595945 GAPVD1Q14C86 1478 aa24.19■■□□□ 1.46
SHKBP1-211ENST00000595945 IGF1RP08069 1367 aa24.19■■□□□ 1.46
SHKBP1-211ENST00000595945 ZNF608Q9ULD9 1512 aaPredicted RBP24.19■■□□□ 1.46
SHKBP1-211ENST00000595945 PBRM1Q86U86 1689 aa24.18■■□□□ 1.46
SHKBP1-211ENST00000595945 ERICH3Q5RHP9 1530 aa24.16■■□□□ 1.46
SHKBP1-211ENST00000595945 PRXQ9BXM0 1461 aa24.15■■□□□ 1.46
SHKBP1-211ENST00000595945 EIF4G3O43432 1585 aaKnown RBP24.15■■□□□ 1.46
SHKBP1-211ENST00000595945 AQRO60306 1485 aaKnown RBP eCLIP24.13■■□□□ 1.45
SHKBP1-211ENST00000595945 CUL7Q14999 1698 aa24.12■■□□□ 1.45
SHKBP1-211ENST00000595945 LOC105371045A0A1W2PR82 267 aa24.12■■□□□ 1.45
SHKBP1-211ENST00000595945 GRIN2BQ13224 1484 aa24.08■■□□□ 1.45
SHKBP1-211ENST00000595945 GOLGA3Q08378 1498 aa24.07■■□□□ 1.44
SHKBP1-211ENST00000595945 RAPGEF2Q9Y4G8 1499 aa24.05■■□□□ 1.44
SHKBP1-211ENST00000595945 CARMIL1Q5VZK9 1371 aa24.04■■□□□ 1.44
SHKBP1-211ENST00000595945 ADAMTS12P58397 1594 aa24■■□□□ 1.43
SHKBP1-211ENST00000595945 FHAD1B1AJZ9 1412 aa23.94■■□□□ 1.42
SHKBP1-211ENST00000595945 TNIKQ9UKE5 1360 aa23.94■■□□□ 1.42
SHKBP1-211ENST00000595945 SNAPC4Q5SXM2 1469 aa23.94■■□□□ 1.42
SHKBP1-211ENST00000595945 MAGI1Q96QZ7 1491 aaPredicted RBP23.94■■□□□ 1.42
SHKBP1-211ENST00000595945 EHMT2Q96KQ7 1210 aa23.93■■□□□ 1.42
SHKBP1-211ENST00000595945 UBTFP17480 764 aaKnown RBP23.84■■□□□ 1.41
SHKBP1-211ENST00000595945 CTTNBP2Q8WZ74 1663 aa23.83■■□□□ 1.4
SHKBP1-211ENST00000595945 SYNJ2O15056 1496 aa23.82■■□□□ 1.4
SHKBP1-211ENST00000595945 GRIN2AQ12879 1464 aa23.78■■□□□ 1.4
SHKBP1-211ENST00000595945 CEP162Q5TB80 1403 aa23.75■■□□□ 1.39
SHKBP1-211ENST00000595945 CHD1O14646 1710 aa23.73■■□□□ 1.39
SHKBP1-211ENST00000595945 CHMP7Q8WUX9 453 aaPredicted RBP23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms