RNA–Protein interactions for RNA: ENST00000595514.1

NOTCH3-203, Transcript of notch 3, humanhuman

TSL 3

Gene NOTCH3, Length 564 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3-203ENST00000595514 NISCHQ9Y2I1 1504 aa26.35■■□□□ 1.81
NOTCH3-203ENST00000595514 ABCC9O60706 1549 aa24.73■■□□□ 1.55
NOTCH3-203ENST00000595514 CCDC180Q9P1Z9 1646 aa23.92■■□□□ 1.42
NOTCH3-203ENST00000595514 DNAJC5BQ9UF47 199 aa23.85■■□□□ 1.41
NOTCH3-203ENST00000595514 RB1CC1Q8TDY2 1594 aa23.18■■□□□ 1.3
NOTCH3-203ENST00000595514 PABPN1Q86U42 306 aaKnown RBP eCLIP22.93■■□□□ 1.26
NOTCH3-203ENST00000595514 NACADO15069 1562 aa22.84■■□□□ 1.25
NOTCH3-203ENST00000595514 DCAF8L2P0C7V8 631 aa22.67■■□□□ 1.22
NOTCH3-203ENST00000595514 UNC13AQ9UPW8 1703 aa22.52■■□□□ 1.2
NOTCH3-203ENST00000595514 BICRAQ9NZM4 1560 aa22.49■■□□□ 1.19
NOTCH3-203ENST00000595514 DNAJC5Q9H3Z4 198 aa22.48■■□□□ 1.19
NOTCH3-203ENST00000595514 CECR2Q9BXF3 1484 aa22.36■■□□□ 1.17
NOTCH3-203ENST00000595514 MYO15BQ96JP2 1530 aa22.27■■□□□ 1.16
NOTCH3-203ENST00000595514 CC2D2AQ9P2K1 1620 aa22.26■■□□□ 1.15
NOTCH3-203ENST00000595514 SHROOM4Q9ULL8 1493 aa22.17■■□□□ 1.14
NOTCH3-203ENST00000595514 EIF4G1Q04637 1599 aaKnown RBP22.04■■□□□ 1.12
NOTCH3-203ENST00000595514 SCRIBQ14160 1630 aa21.79■■□□□ 1.08
NOTCH3-203ENST00000595514 DCAF1Q9Y4B6 1507 aa21.7■■□□□ 1.07
NOTCH3-203ENST00000595514 ZCCHC6Q5VYS8 1495 aaKnown RBP21.67■■□□□ 1.06
NOTCH3-203ENST00000595514 CUX2O14529 1486 aa21.62■■□□□ 1.05
NOTCH3-203ENST00000595514 ERCC6Q03468 1493 aa21.45■■□□□ 1.02
NOTCH3-203ENST00000595514 TRIM41Q8WV44 630 aa21.23■□□□□ 0.99
NOTCH3-203ENST00000595514 NCAPD3P42695 1498 aa21.11■□□□□ 0.97
NOTCH3-203ENST00000595514 NESP48681 1621 aa21■□□□□ 0.95
NOTCH3-203ENST00000595514 ATAD2BQ9ULI0 1458 aa20.94■□□□□ 0.94
NOTCH3-203ENST00000595514 THOC2Q8NI27 1593 aaKnown RBP20.9■□□□□ 0.94
NOTCH3-203ENST00000595514 HMGXB3Q12766 1538 aa20.86■□□□□ 0.93
NOTCH3-203ENST00000595514 SMARCA2P51531 1590 aa20.84■□□□□ 0.93
NOTCH3-203ENST00000595514 LAMC3Q9Y6N6 1575 aa20.73■□□□□ 0.91
NOTCH3-203ENST00000595514 BAZ1BQ9UIG0 1483 aaKnown RBP20.71■□□□□ 0.91
NOTCH3-203ENST00000595514 PDS5BQ9NTI5 1447 aa20.7■□□□□ 0.9
NOTCH3-203ENST00000595514 SMARCA4P51532 1647 aa20.69■□□□□ 0.9
NOTCH3-203ENST00000595514 KIF21AQ7Z4S6 1674 aa20.64■□□□□ 0.89
NOTCH3-203ENST00000595514 OSCARQ8IYS5 282 aa20.55■□□□□ 0.88
NOTCH3-203ENST00000595514 MRC2Q9UBG0 1479 aa20.54■□□□□ 0.88
NOTCH3-203ENST00000595514 BAZ1AQ9NRL2 1556 aaPredicted RBP20.54■□□□□ 0.88
NOTCH3-203ENST00000595514 WDR62O43379 1518 aa20.48■□□□□ 0.87
NOTCH3-203ENST00000595514 PEG3Q9GZU2 1588 aa20.48■□□□□ 0.87
NOTCH3-203ENST00000595514 CADPSQ9ULU8 1353 aa20.46■□□□□ 0.87
NOTCH3-203ENST00000595514 CEP164Q9UPV0 1460 aa20.31■□□□□ 0.84
NOTCH3-203ENST00000595514 MROH2BQ7Z745 1585 aa20.29■□□□□ 0.84
NOTCH3-203ENST00000595514 RIMBP3CA6NJZ7 1639 aa20.27■□□□□ 0.84
NOTCH3-203ENST00000595514 RIMBP3BA6NNM3 1639 aa20.27■□□□□ 0.84
NOTCH3-203ENST00000595514 RIMBP3Q9UFD9 1639 aa20.27■□□□□ 0.84
NOTCH3-203ENST00000595514 FANCD2Q9BXW9 1451 aa20.22■□□□□ 0.83
NOTCH3-203ENST00000595514 ARHGEF11O15085 1522 aa20.17■□□□□ 0.82
NOTCH3-203ENST00000595514 TRHP20396 242 aaPredicted RBP20.17■□□□□ 0.82
NOTCH3-203ENST00000595514 AEBP2Q6ZN18 517 aaPredicted RBP20.16■□□□□ 0.82
NOTCH3-203ENST00000595514 CYB5RLQ6IPT4 315 aa20.13■□□□□ 0.81
NOTCH3-203ENST00000595514 URB2Q14146 1524 aaKnown RBP20.07■□□□□ 0.8
NOTCH3-203ENST00000595514 CFTRP13569 1480 aa20.05■□□□□ 0.8
NOTCH3-203ENST00000595514 WIZO95785 1651 aa19.97■□□□□ 0.79
NOTCH3-203ENST00000595514 ZNF608Q9ULD9 1512 aaPredicted RBP19.96■□□□□ 0.79
NOTCH3-203ENST00000595514 IFT140Q96RY7 1462 aa19.94■□□□□ 0.78
NOTCH3-203ENST00000595514 ARAP1Q96P48 1450 aa19.92■□□□□ 0.78
NOTCH3-203ENST00000595514 RSF1Q96T23 1441 aaPredicted RBP19.82■□□□□ 0.76
NOTCH3-203ENST00000595514 FBLN2P98095 1184 aa19.79■□□□□ 0.76
NOTCH3-203ENST00000595514 EIF4G3O43432 1585 aaKnown RBP19.78■□□□□ 0.76
NOTCH3-203ENST00000595514 TOPBP1Q92547 1522 aa19.74■□□□□ 0.75
NOTCH3-203ENST00000595514 CHD1O14646 1710 aa19.73■□□□□ 0.75
NOTCH3-203ENST00000595514 TOP2AP11388 1531 aaKnown RBP19.71■□□□□ 0.75
NOTCH3-203ENST00000595514 AQRO60306 1485 aaKnown RBP eCLIP19.7■□□□□ 0.74
NOTCH3-203ENST00000595514 ABCC8Q09428 1581 aa19.66■□□□□ 0.74
NOTCH3-203ENST00000595514 PRDM2Q13029 1718 aa19.65■□□□□ 0.74
NOTCH3-203ENST00000595514 DNMBPQ6XZF7 1577 aa19.58■□□□□ 0.73
NOTCH3-203ENST00000595514 TARBP1Q13395 1621 aaKnown RBP19.57■□□□□ 0.72
NOTCH3-203ENST00000595514 CLASP1Q7Z460 1538 aa19.53■□□□□ 0.72
NOTCH3-203ENST00000595514 CHMP7Q8WUX9 453 aaPredicted RBP19.51■□□□□ 0.71
NOTCH3-203ENST00000595514 CCDC88BA6NC98 1476 aa19.51■□□□□ 0.71
NOTCH3-203ENST00000595514 POLA1P09884 1462 aaPredicted RBP19.49■□□□□ 0.71
NOTCH3-203ENST00000595514 SYNJ1O43426 1573 aa19.49■□□□□ 0.71
NOTCH3-203ENST00000595514 SNAPC4Q5SXM2 1469 aa19.48■□□□□ 0.71
NOTCH3-203ENST00000595514 TDRD9Q8NDG6 1382 aaKnown RBP19.48■□□□□ 0.71
NOTCH3-203ENST00000595514 RAD54L2Q9Y4B4 1467 aa19.44■□□□□ 0.7
NOTCH3-203ENST00000595514 GAPVD1Q14C86 1478 aa19.43■□□□□ 0.7
NOTCH3-203ENST00000595514 SOGA1O94964 1423 aa19.42■□□□□ 0.7
NOTCH3-203ENST00000595514 MAGI1Q96QZ7 1491 aaPredicted RBP19.39■□□□□ 0.69
NOTCH3-203ENST00000595514 SYNJ2O15056 1496 aa19.35■□□□□ 0.69
NOTCH3-203ENST00000595514 WDR97A6NE52 1622 aa19.34■□□□□ 0.69
NOTCH3-203ENST00000595514 ILDR1Q86SU0 546 aaPredicted RBP19.34■□□□□ 0.69
NOTCH3-203ENST00000595514 GRIN2BQ13224 1484 aa19.33■□□□□ 0.68
NOTCH3-203ENST00000595514 FGD5Q6ZNL6 1462 aa19.26■□□□□ 0.67
NOTCH3-203ENST00000595514 ERCC6L2Q5T890 1561 aa19.17■□□□□ 0.66
NOTCH3-203ENST00000595514 KDM4FA0A1W2PPD8 638 aa19.12■□□□□ 0.65
NOTCH3-203ENST00000595514 CUX1P39880 1505 aa19.1■□□□□ 0.65
NOTCH3-203ENST00000595514 PBRM1Q86U86 1689 aa19.1■□□□□ 0.65
NOTCH3-203ENST00000595514 KIF13AQ9H1H9 1805 aa19.09■□□□□ 0.65
NOTCH3-203ENST00000595514 CEP170Q5SW79 1584 aa19.08■□□□□ 0.65
NOTCH3-203ENST00000595514 FAM69CQ0P6D2 419 aa19.07■□□□□ 0.64
NOTCH3-203ENST00000595514 GRIN2AQ12879 1464 aa19.06■□□□□ 0.64
NOTCH3-203ENST00000595514 NUP160Q12769 1436 aa19.02■□□□□ 0.64
NOTCH3-203ENST00000595514 ABCC10Q5T3U5 1492 aa19■□□□□ 0.63
NOTCH3-203ENST00000595514 ABCA5Q8WWZ7 1642 aa19■□□□□ 0.63
NOTCH3-203ENST00000595514 ABCA10Q8WWZ4 1543 aa19■□□□□ 0.63
NOTCH3-203ENST00000595514 NPM1P06748 294 aaKnown RBP eCLIP18.98■□□□□ 0.63
NOTCH3-203ENST00000595514 SHROOM2Q13796 1616 aa18.96■□□□□ 0.63
NOTCH3-203ENST00000595514 KDM6BO15054 1643 aa18.96■□□□□ 0.63
NOTCH3-203ENST00000595514 ADAMTS12P58397 1594 aa18.93■□□□□ 0.62
NOTCH3-203ENST00000595514 PRG4Q92954 1404 aaPredicted RBP18.92■□□□□ 0.62
NOTCH3-203ENST00000595514 MAPKBP1O60336 1514 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms