RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 NISCHQ9Y2I1 1504 aa35.47■■■■□ 3.27
VRK3-206ENST00000594090 CCDC180Q9P1Z9 1646 aa31.58■■■□□ 2.65
VRK3-206ENST00000594090 ABCC9O60706 1549 aa30.83■■■□□ 2.53
VRK3-206ENST00000594090 RB1CC1Q8TDY2 1594 aa29.68■■■□□ 2.34
VRK3-206ENST00000594090 NACADO15069 1562 aa29.65■■■□□ 2.34
VRK3-206ENST00000594090 ZCCHC6Q5VYS8 1495 aaKnown RBP29.58■■■□□ 2.33
VRK3-206ENST00000594090 DCAF8L2P0C7V8 631 aa29.54■■■□□ 2.32
VRK3-206ENST00000594090 MYO15BQ96JP2 1530 aa29.48■■■□□ 2.31
VRK3-206ENST00000594090 DCAF1Q9Y4B6 1507 aa29.36■■■□□ 2.29
VRK3-206ENST00000594090 UNC13AQ9UPW8 1703 aa29.05■■■□□ 2.24
VRK3-206ENST00000594090 BICRAQ9NZM4 1560 aa28.8■■■□□ 2.2
VRK3-206ENST00000594090 SCRIBQ14160 1630 aa28.79■■■□□ 2.2
VRK3-206ENST00000594090 PABPN1Q86U42 306 aaKnown RBP eCLIP28.77■■■□□ 2.2
VRK3-206ENST00000594090 SHROOM4Q9ULL8 1493 aa28.51■■■□□ 2.15
VRK3-206ENST00000594090 DNAJC5BQ9UF47 199 aa28.25■■■□□ 2.11
VRK3-206ENST00000594090 EIF4G1Q04637 1599 aaKnown RBP28.03■■■□□ 2.08
VRK3-206ENST00000594090 CC2D2AQ9P2K1 1620 aa27.92■■■□□ 2.06
VRK3-206ENST00000594090 CECR2Q9BXF3 1484 aa27.7■■■□□ 2.02
VRK3-206ENST00000594090 SMARCA4P51532 1647 aa27.55■■■□□ 2
VRK3-206ENST00000594090 BAZ1AQ9NRL2 1556 aaPredicted RBP27.5■■□□□ 1.99
VRK3-206ENST00000594090 ATAD2BQ9ULI0 1458 aa27.37■■□□□ 1.97
VRK3-206ENST00000594090 SMARCA2P51531 1590 aa27.35■■□□□ 1.97
VRK3-206ENST00000594090 MROH2BQ7Z745 1585 aa27.34■■□□□ 1.97
VRK3-206ENST00000594090 NCAPD3P42695 1498 aa27.34■■□□□ 1.97
VRK3-206ENST00000594090 PEG3Q9GZU2 1588 aa27.28■■□□□ 1.96
VRK3-206ENST00000594090 HMGXB3Q12766 1538 aa27.24■■□□□ 1.95
VRK3-206ENST00000594090 BAZ1BQ9UIG0 1483 aaKnown RBP27.15■■□□□ 1.94
VRK3-206ENST00000594090 WIZO95785 1651 aa27.07■■□□□ 1.92
VRK3-206ENST00000594090 RSF1Q96T23 1441 aaPredicted RBP27.02■■□□□ 1.92
VRK3-206ENST00000594090 TOP2AP11388 1531 aaKnown RBP26.78■■□□□ 1.88
VRK3-206ENST00000594090 NESP48681 1621 aa26.69■■□□□ 1.86
VRK3-206ENST00000594090 LAMC3Q9Y6N6 1575 aa26.65■■□□□ 1.86
VRK3-206ENST00000594090 ERCC6Q03468 1493 aa26.57■■□□□ 1.84
VRK3-206ENST00000594090 CADPSQ9ULU8 1353 aa26.53■■□□□ 1.84
VRK3-206ENST00000594090 CCDC88BA6NC98 1476 aa26.44■■□□□ 1.82
VRK3-206ENST00000594090 PDS5BQ9NTI5 1447 aa26.43■■□□□ 1.82
VRK3-206ENST00000594090 KIF21AQ7Z4S6 1674 aa26.41■■□□□ 1.82
VRK3-206ENST00000594090 CFTRP13569 1480 aa26.4■■□□□ 1.82
VRK3-206ENST00000594090 THOC2Q8NI27 1593 aaKnown RBP26.34■■□□□ 1.81
VRK3-206ENST00000594090 CUX2O14529 1486 aa26.3■■□□□ 1.8
VRK3-206ENST00000594090 SUPT5HO00267 1087 aaKnown RBP26.29■■□□□ 1.8
VRK3-206ENST00000594090 PRDM2Q13029 1718 aa26.27■■□□□ 1.8
VRK3-206ENST00000594090 FANCD2Q9BXW9 1451 aa26.25■■□□□ 1.79
VRK3-206ENST00000594090 CEP164Q9UPV0 1460 aa26.23■■□□□ 1.79
VRK3-206ENST00000594090 MRC2Q9UBG0 1479 aa26.18■■□□□ 1.78
VRK3-206ENST00000594090 WDR62O43379 1518 aa26.11■■□□□ 1.77
VRK3-206ENST00000594090 URB2Q14146 1524 aaKnown RBP26■■□□□ 1.75
VRK3-206ENST00000594090 TOPBP1Q92547 1522 aa25.85■■□□□ 1.73
VRK3-206ENST00000594090 DNMBPQ6XZF7 1577 aa25.83■■□□□ 1.73
VRK3-206ENST00000594090 ABCC8Q09428 1581 aa25.82■■□□□ 1.72
VRK3-206ENST00000594090 CUX1P39880 1505 aa25.67■■□□□ 1.7
VRK3-206ENST00000594090 IFT140Q96RY7 1462 aa25.66■■□□□ 1.7
VRK3-206ENST00000594090 POLA1P09884 1462 aaPredicted RBP25.62■■□□□ 1.69
VRK3-206ENST00000594090 TARBP1Q13395 1621 aaKnown RBP25.57■■□□□ 1.68
VRK3-206ENST00000594090 FGD5Q6ZNL6 1462 aa25.56■■□□□ 1.68
VRK3-206ENST00000594090 ZNF608Q9ULD9 1512 aaPredicted RBP25.55■■□□□ 1.68
VRK3-206ENST00000594090 RAD54L2Q9Y4B4 1467 aa25.5■■□□□ 1.67
VRK3-206ENST00000594090 EIF4G3O43432 1585 aaKnown RBP25.5■■□□□ 1.67
VRK3-206ENST00000594090 SOGA1O94964 1423 aa25.48■■□□□ 1.67
VRK3-206ENST00000594090 WRNQ14191 1432 aaPredicted RBP eCLIP25.47■■□□□ 1.67
VRK3-206ENST00000594090 BIVM-ERCC5R4GMW8 1640 aa25.46■■□□□ 1.67
VRK3-206ENST00000594090 SYNJ1O43426 1573 aa25.45■■□□□ 1.66
VRK3-206ENST00000594090 TOP2BQ02880 1626 aa25.44■■□□□ 1.66
VRK3-206ENST00000594090 DNAJC5Q9H3Z4 198 aa25.41■■□□□ 1.66
VRK3-206ENST00000594090 WDR97A6NE52 1622 aa25.41■■□□□ 1.66
VRK3-206ENST00000594090 AQRO60306 1485 aaKnown RBP eCLIP25.38■■□□□ 1.653e-7■■■■■ 63.7
VRK3-206ENST00000594090 TDRD9Q8NDG6 1382 aaKnown RBP25.33■■□□□ 1.65
VRK3-206ENST00000594090 ABCA10Q8WWZ4 1543 aa25.31■■□□□ 1.64
VRK3-206ENST00000594090 ABCA5Q8WWZ7 1642 aa25.25■■□□□ 1.63
VRK3-206ENST00000594090 GAPVD1Q14C86 1478 aa25.21■■□□□ 1.63
VRK3-206ENST00000594090 PBRM1Q86U86 1689 aa25.21■■□□□ 1.63
VRK3-206ENST00000594090 GRIN2BQ13224 1484 aa25.21■■□□□ 1.63
VRK3-206ENST00000594090 SNAPC4Q5SXM2 1469 aa25.19■■□□□ 1.62
VRK3-206ENST00000594090 CHD1O14646 1710 aa25.16■■□□□ 1.62
VRK3-206ENST00000594090 MAGI1Q96QZ7 1491 aaPredicted RBP25.15■■□□□ 1.62
VRK3-206ENST00000594090 OSCARQ8IYS5 282 aa25.14■■□□□ 1.62
VRK3-206ENST00000594090 SYNJ2O15056 1496 aa25.05■■□□□ 1.6
VRK3-206ENST00000594090 FBLN2P98095 1184 aa25.04■■□□□ 1.6
VRK3-206ENST00000594090 ERICH3Q5RHP9 1530 aa25.02■■□□□ 1.6
VRK3-206ENST00000594090 ADAMTS12P58397 1594 aa25■■□□□ 1.59
VRK3-206ENST00000594090 CHMP7Q8WUX9 453 aaPredicted RBP24.98■■□□□ 1.59
VRK3-206ENST00000594090 KIF27Q86VH2 1401 aa24.94■■□□□ 1.58
VRK3-206ENST00000594090 FHAD1B1AJZ9 1412 aa24.91■■□□□ 1.58
VRK3-206ENST00000594090 GRIN2AQ12879 1464 aa24.9■■□□□ 1.58
VRK3-206ENST00000594090 CLASP1Q7Z460 1538 aa24.89■■□□□ 1.57
VRK3-206ENST00000594090 TRIM41Q8WV44 630 aa24.83■■□□□ 1.57
VRK3-206ENST00000594090 RIMBP3CA6NJZ7 1639 aa24.82■■□□□ 1.56
VRK3-206ENST00000594090 RIMBP3BA6NNM3 1639 aa24.82■■□□□ 1.56
VRK3-206ENST00000594090 RIMBP3Q9UFD9 1639 aa24.82■■□□□ 1.56
VRK3-206ENST00000594090 IGF1RP08069 1367 aa24.82■■□□□ 1.56
VRK3-206ENST00000594090 ARHGEF11O15085 1522 aa24.81■■□□□ 1.56
VRK3-206ENST00000594090 CUL7Q14999 1698 aa24.81■■□□□ 1.56
VRK3-206ENST00000594090 CEP170Q5SW79 1584 aa24.79■■□□□ 1.56
VRK3-206ENST00000594090 NUP160Q12769 1436 aa24.79■■□□□ 1.56
VRK3-206ENST00000594090 RUSC2Q8N2Y8 1516 aa24.72■■□□□ 1.55
VRK3-206ENST00000594090 CARMIL1Q5VZK9 1371 aa24.67■■□□□ 1.54
VRK3-206ENST00000594090 SHROOM2Q13796 1616 aa24.62■■□□□ 1.53
VRK3-206ENST00000594090 ARAP1Q96P48 1450 aa24.62■■□□□ 1.53
VRK3-206ENST00000594090 RAPGEF2Q9Y4G8 1499 aa24.55■■□□□ 1.52
VRK3-206ENST00000594090 CHIC1Q5VXU3 224 aa24.54■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 142.3 ms