RNA–Protein interactions for RNA: ENST00000593168.5

VMP1-217, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-217ENST00000593168 NISCHQ9Y2I1 1504 aa31.25■■■□□ 2.59
VMP1-217ENST00000593168 ABCC9O60706 1549 aa28.49■■■□□ 2.15
VMP1-217ENST00000593168 CCDC180Q9P1Z9 1646 aa28.21■■■□□ 2.11
VMP1-217ENST00000593168 DNAJC5BQ9UF47 199 aa27.02■■□□□ 1.92
VMP1-217ENST00000593168 RB1CC1Q8TDY2 1594 aa26.97■■□□□ 1.91
VMP1-217ENST00000593168 NACADO15069 1562 aa26.7■■□□□ 1.86
VMP1-217ENST00000593168 UNC13AQ9UPW8 1703 aa26.48■■□□□ 1.83
VMP1-217ENST00000593168 DCAF8L2P0C7V8 631 aa26.47■■□□□ 1.83
VMP1-217ENST00000593168 PABPN1Q86U42 306 aaKnown RBP eCLIP26.46■■□□□ 1.83
VMP1-217ENST00000593168 BICRAQ9NZM4 1560 aa26.25■■□□□ 1.79
VMP1-217ENST00000593168 MYO15BQ96JP2 1530 aa26.21■■□□□ 1.79
VMP1-217ENST00000593168 ZCCHC6Q5VYS8 1495 aaKnown RBP25.93■■□□□ 1.74
VMP1-217ENST00000593168 SHROOM4Q9ULL8 1493 aa25.78■■□□□ 1.72
VMP1-217ENST00000593168 DCAF1Q9Y4B6 1507 aa25.78■■□□□ 1.72
VMP1-217ENST00000593168 CC2D2AQ9P2K1 1620 aa25.74■■□□□ 1.71
VMP1-217ENST00000593168 SCRIBQ14160 1630 aa25.69■■□□□ 1.7
VMP1-217ENST00000593168 CECR2Q9BXF3 1484 aa25.68■■□□□ 1.7
VMP1-217ENST00000593168 EIF4G1Q04637 1599 aaKnown RBP25.6■■□□□ 1.69
VMP1-217ENST00000593168 DNAJC5Q9H3Z4 198 aa24.99■■□□□ 1.59
VMP1-217ENST00000593168 CUX2O14529 1486 aa24.65■■□□□ 1.54
VMP1-217ENST00000593168 NCAPD3P42695 1498 aa24.64■■□□□ 1.54
VMP1-217ENST00000593168 ERCC6Q03468 1493 aa24.58■■□□□ 1.53
VMP1-217ENST00000593168 ATAD2BQ9ULI0 1458 aa24.54■■□□□ 1.52
VMP1-217ENST00000593168 SMARCA4P51532 1647 aa24.47■■□□□ 1.51
VMP1-217ENST00000593168 HMGXB3Q12766 1538 aa24.45■■□□□ 1.51
VMP1-217ENST00000593168 SMARCA2P51531 1590 aa24.44■■□□□ 1.5
VMP1-217ENST00000593168 NESP48681 1621 aa24.42■■□□□ 1.5
VMP1-217ENST00000593168 BAZ1BQ9UIG0 1483 aaKnown RBP24.28■■□□□ 1.48
VMP1-217ENST00000593168 BAZ1AQ9NRL2 1556 aaPredicted RBP24.27■■□□□ 1.48
VMP1-217ENST00000593168 THOC2Q8NI27 1593 aaKnown RBP24.25■■□□□ 1.47
VMP1-217ENST00000593168 PEG3Q9GZU2 1588 aa24.22■■□□□ 1.47
VMP1-217ENST00000593168 LAMC3Q9Y6N6 1575 aa24.16■■□□□ 1.46
VMP1-217ENST00000593168 KIF21AQ7Z4S6 1674 aa24.13■■□□□ 1.45
VMP1-217ENST00000593168 MROH2BQ7Z745 1585 aa24.1■■□□□ 1.45
VMP1-217ENST00000593168 PDS5BQ9NTI5 1447 aa23.99■■□□□ 1.43
VMP1-217ENST00000593168 SUPT5HO00267 1087 aaKnown RBP23.94■■□□□ 1.42
VMP1-217ENST00000593168 RSF1Q96T23 1441 aaPredicted RBP23.9■■□□□ 1.42
VMP1-217ENST00000593168 CADPSQ9ULU8 1353 aa23.87■■□□□ 1.41
VMP1-217ENST00000593168 WIZO95785 1651 aa23.83■■□□□ 1.41
VMP1-217ENST00000593168 MRC2Q9UBG0 1479 aa23.83■■□□□ 1.41
VMP1-217ENST00000593168 WDR62O43379 1518 aa23.8■■□□□ 1.4
VMP1-217ENST00000593168 TRIM41Q8WV44 630 aa23.78■■□□□ 1.4
VMP1-217ENST00000593168 CEP164Q9UPV0 1460 aa23.67■■□□□ 1.38
VMP1-217ENST00000593168 FANCD2Q9BXW9 1451 aa23.62■■□□□ 1.37
VMP1-217ENST00000593168 CFTRP13569 1480 aa23.55■■□□□ 1.36
VMP1-217ENST00000593168 URB2Q14146 1524 aaKnown RBP23.48■■□□□ 1.35
VMP1-217ENST00000593168 TOP2AP11388 1531 aaKnown RBP23.46■■□□□ 1.35
VMP1-217ENST00000593168 OSCARQ8IYS5 282 aa23.44■■□□□ 1.34
VMP1-217ENST00000593168 PRDM2Q13029 1718 aa23.38■■□□□ 1.33
VMP1-217ENST00000593168 RIMBP3CA6NJZ7 1639 aa23.27■■□□□ 1.32
VMP1-217ENST00000593168 RIMBP3BA6NNM3 1639 aa23.27■■□□□ 1.32
VMP1-217ENST00000593168 RIMBP3Q9UFD9 1639 aa23.27■■□□□ 1.32
VMP1-217ENST00000593168 ZNF608Q9ULD9 1512 aaPredicted RBP23.24■■□□□ 1.31
VMP1-217ENST00000593168 IFT140Q96RY7 1462 aa23.2■■□□□ 1.3
VMP1-217ENST00000593168 CCDC88BA6NC98 1476 aa23.19■■□□□ 1.3
VMP1-217ENST00000593168 TOPBP1Q92547 1522 aa23.16■■□□□ 1.3
VMP1-217ENST00000593168 ARHGEF11O15085 1522 aa23.13■■□□□ 1.29
VMP1-217ENST00000593168 EIF4G3O43432 1585 aaKnown RBP23.11■■□□□ 1.29
VMP1-217ENST00000593168 DNMBPQ6XZF7 1577 aa23.05■■□□□ 1.28
VMP1-217ENST00000593168 CHD1O14646 1710 aa23.03■■□□□ 1.28
VMP1-217ENST00000593168 ABCC8Q09428 1581 aa23.03■■□□□ 1.28
VMP1-217ENST00000593168 TARBP1Q13395 1621 aaKnown RBP23■■□□□ 1.27
VMP1-217ENST00000593168 AQRO60306 1485 aaKnown RBP eCLIP22.98■■□□□ 1.27
VMP1-217ENST00000593168 CYB5RLQ6IPT4 315 aa22.94■■□□□ 1.26
VMP1-217ENST00000593168 POLA1P09884 1462 aaPredicted RBP22.9■■□□□ 1.26
VMP1-217ENST00000593168 ARAP1Q96P48 1450 aa22.89■■□□□ 1.25
VMP1-217ENST00000593168 CHIC1Q5VXU3 224 aa22.86■■□□□ 1.25
VMP1-217ENST00000593168 FBLN2P98095 1184 aa22.84■■□□□ 1.25
VMP1-217ENST00000593168 RAD54L2Q9Y4B4 1467 aa22.83■■□□□ 1.25
VMP1-217ENST00000593168 TRHP20396 242 aaPredicted RBP22.78■■□□□ 1.24
VMP1-217ENST00000593168 TDRD9Q8NDG6 1382 aaKnown RBP22.77■■□□□ 1.24
VMP1-217ENST00000593168 SOGA1O94964 1423 aa22.76■■□□□ 1.23
VMP1-217ENST00000593168 SNAPC4Q5SXM2 1469 aa22.73■■□□□ 1.23
VMP1-217ENST00000593168 CLASP1Q7Z460 1538 aa22.72■■□□□ 1.23
VMP1-217ENST00000593168 FGD5Q6ZNL6 1462 aa22.71■■□□□ 1.23
VMP1-217ENST00000593168 WDR97A6NE52 1622 aa22.71■■□□□ 1.23
VMP1-217ENST00000593168 CUX1P39880 1505 aa22.66■■□□□ 1.22
VMP1-217ENST00000593168 SYNJ1O43426 1573 aa22.64■■□□□ 1.22
VMP1-217ENST00000593168 MAGI1Q96QZ7 1491 aaPredicted RBP22.63■■□□□ 1.21
VMP1-217ENST00000593168 CHMP7Q8WUX9 453 aaPredicted RBP22.61■■□□□ 1.21
VMP1-217ENST00000593168 GRIN2BQ13224 1484 aa22.6■■□□□ 1.21
VMP1-217ENST00000593168 PBRM1Q86U86 1689 aa22.58■■□□□ 1.2
VMP1-217ENST00000593168 SYNJ2O15056 1496 aa22.57■■□□□ 1.2
VMP1-217ENST00000593168 WRNQ14191 1432 aaPredicted RBP eCLIP22.51■■□□□ 1.19
VMP1-217ENST00000593168 GAPVD1Q14C86 1478 aa22.48■■□□□ 1.19
VMP1-217ENST00000593168 ABCA5Q8WWZ7 1642 aa22.46■■□□□ 1.19
VMP1-217ENST00000593168 ABCA10Q8WWZ4 1543 aa22.42■■□□□ 1.18
VMP1-217ENST00000593168 AEBP2Q6ZN18 517 aaPredicted RBP22.39■■□□□ 1.17
VMP1-217ENST00000593168 ERCC6L2Q5T890 1561 aa22.38■■□□□ 1.17
VMP1-217ENST00000593168 TOP2BQ02880 1626 aa22.34■■□□□ 1.17
VMP1-217ENST00000593168 BIVM-ERCC5R4GMW8 1640 aa22.32■■□□□ 1.16
VMP1-217ENST00000593168 GRIN2AQ12879 1464 aa22.32■■□□□ 1.16
VMP1-217ENST00000593168 ADAMTS12P58397 1594 aa22.3■■□□□ 1.16
VMP1-217ENST00000593168 CEP170Q5SW79 1584 aa22.3■■□□□ 1.16
VMP1-217ENST00000593168 NUP160Q12769 1436 aa22.25■■□□□ 1.15
VMP1-217ENST00000593168 SHROOM2Q13796 1616 aa22.24■■□□□ 1.15
VMP1-217ENST00000593168 FHAD1B1AJZ9 1412 aa22.17■■□□□ 1.14
VMP1-217ENST00000593168 KIF13AQ9H1H9 1805 aa22.15■■□□□ 1.14
VMP1-217ENST00000593168 ERICH3Q5RHP9 1530 aa22.13■■□□□ 1.13
VMP1-217ENST00000593168 EEA1Q15075 1411 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms