RNA–Protein interactions for RNA: ENST00000592927.5

DDX39A-219, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-219ENST00000592927 NISCHQ9Y2I1 1504 aa28.07■■■□□ 2.08
DDX39A-219ENST00000592927 ABCC9O60706 1549 aa26.5■■□□□ 1.83
DDX39A-219ENST00000592927 DNAJC5BQ9UF47 199 aa25.75■■□□□ 1.71
DDX39A-219ENST00000592927 CCDC180Q9P1Z9 1646 aa25.43■■□□□ 1.66
DDX39A-219ENST00000592927 RB1CC1Q8TDY2 1594 aa24.73■■□□□ 1.55
DDX39A-219ENST00000592927 PABPN1Q86U42 306 aaKnown RBP eCLIP24.63■■□□□ 1.53
DDX39A-219ENST00000592927 NACADO15069 1562 aa24.35■■□□□ 1.49
DDX39A-219ENST00000592927 DCAF8L2P0C7V8 631 aa24.27■■□□□ 1.48
DDX39A-219ENST00000592927 DNAJC5Q9H3Z4 198 aa24.27■■□□□ 1.48
DDX39A-219ENST00000592927 BICRAQ9NZM4 1560 aa24.06■■□□□ 1.44
DDX39A-219ENST00000592927 UNC13AQ9UPW8 1703 aa24.05■■□□□ 1.44
DDX39A-219ENST00000592927 CECR2Q9BXF3 1484 aa23.95■■□□□ 1.42
DDX39A-219ENST00000592927 CC2D2AQ9P2K1 1620 aa23.81■■□□□ 1.4
DDX39A-219ENST00000592927 MYO15BQ96JP2 1530 aa23.69■■□□□ 1.38
DDX39A-219ENST00000592927 SHROOM4Q9ULL8 1493 aa23.58■■□□□ 1.37
DDX39A-219ENST00000592927 EIF4G1Q04637 1599 aaKnown RBP23.55■■□□□ 1.36
DDX39A-219ENST00000592927 ZCCHC6Q5VYS8 1495 aaKnown RBP23.42■■□□□ 1.34
DDX39A-219ENST00000592927 SCRIBQ14160 1630 aa23.22■■□□□ 1.31
DDX39A-219ENST00000592927 DCAF1Q9Y4B6 1507 aa23.21■■□□□ 1.31
DDX39A-219ENST00000592927 CUX2O14529 1486 aa23.15■■□□□ 1.3
DDX39A-219ENST00000592927 ERCC6Q03468 1493 aa22.93■■□□□ 1.26
DDX39A-219ENST00000592927 TRIM41Q8WV44 630 aa22.88■■□□□ 1.25
DDX39A-219ENST00000592927 NCAPD3P42695 1498 aa22.55■■□□□ 1.2
DDX39A-219ENST00000592927 NESP48681 1621 aa22.51■■□□□ 1.19
DDX39A-219ENST00000592927 ATAD2BQ9ULI0 1458 aa22.35■■□□□ 1.17
DDX39A-219ENST00000592927 THOC2Q8NI27 1593 aaKnown RBP22.35■■□□□ 1.17
DDX39A-219ENST00000592927 HMGXB3Q12766 1538 aa22.22■■□□□ 1.15
DDX39A-219ENST00000592927 SMARCA2P51531 1590 aa22.21■■□□□ 1.15
DDX39A-219ENST00000592927 LAMC3Q9Y6N6 1575 aa22.12■■□□□ 1.13
DDX39A-219ENST00000592927 PDS5BQ9NTI5 1447 aa22.1■■□□□ 1.13
DDX39A-219ENST00000592927 BAZ1BQ9UIG0 1483 aaKnown RBP22.08■■□□□ 1.12
DDX39A-219ENST00000592927 OSCARQ8IYS5 282 aa22.06■■□□□ 1.12
DDX39A-219ENST00000592927 KIF21AQ7Z4S6 1674 aa22.05■■□□□ 1.12
DDX39A-219ENST00000592927 SMARCA4P51532 1647 aa22.03■■□□□ 1.12
DDX39A-219ENST00000592927 BAZ1AQ9NRL2 1556 aaPredicted RBP21.96■■□□□ 1.11
DDX39A-219ENST00000592927 MRC2Q9UBG0 1479 aa21.93■■□□□ 1.1
DDX39A-219ENST00000592927 WDR62O43379 1518 aa21.86■■□□□ 1.09
DDX39A-219ENST00000592927 CADPSQ9ULU8 1353 aa21.86■■□□□ 1.09
DDX39A-219ENST00000592927 PEG3Q9GZU2 1588 aa21.81■■□□□ 1.08
DDX39A-219ENST00000592927 RIMBP3CA6NJZ7 1639 aa21.73■■□□□ 1.07
DDX39A-219ENST00000592927 RIMBP3BA6NNM3 1639 aa21.73■■□□□ 1.07
DDX39A-219ENST00000592927 RIMBP3Q9UFD9 1639 aa21.73■■□□□ 1.07
DDX39A-219ENST00000592927 AEBP2Q6ZN18 517 aaPredicted RBP21.72■■□□□ 1.07
DDX39A-219ENST00000592927 TRHP20396 242 aaPredicted RBP21.7■■□□□ 1.06
DDX39A-219ENST00000592927 CEP164Q9UPV0 1460 aa21.66■■□□□ 1.06
DDX39A-219ENST00000592927 CYB5RLQ6IPT4 315 aa21.64■■□□□ 1.05
DDX39A-219ENST00000592927 MROH2BQ7Z745 1585 aa21.64■■□□□ 1.05
DDX39A-219ENST00000592927 ARHGEF11O15085 1522 aa21.61■■□□□ 1.05
DDX39A-219ENST00000592927 FANCD2Q9BXW9 1451 aa21.58■■□□□ 1.05
DDX39A-219ENST00000592927 RSF1Q96T23 1441 aaPredicted RBP21.49■■□□□ 1.03
DDX39A-219ENST00000592927 URB2Q14146 1524 aaKnown RBP21.45■■□□□ 1.02
DDX39A-219ENST00000592927 CFTRP13569 1480 aa21.39■■□□□ 1.01
DDX39A-219ENST00000592927 WIZO95785 1651 aa21.38■■□□□ 1.01
DDX39A-219ENST00000592927 ZNF608Q9ULD9 1512 aaPredicted RBP21.36■■□□□ 1.01
DDX39A-219ENST00000592927 ARAP1Q96P48 1450 aa21.35■■□□□ 1.01
DDX39A-219ENST00000592927 IFT140Q96RY7 1462 aa21.27■■□□□ 1
DDX39A-219ENST00000592927 SUPT5HO00267 1087 aaKnown RBP21.22■□□□□ 0.99
DDX39A-219ENST00000592927 FBLN2P98095 1184 aa21.2■□□□□ 0.98
DDX39A-219ENST00000592927 TOP2AP11388 1531 aaKnown RBP21.19■□□□□ 0.98
DDX39A-219ENST00000592927 EIF4G3O43432 1585 aaKnown RBP21.1■□□□□ 0.97
DDX39A-219ENST00000592927 AQRO60306 1485 aaKnown RBP eCLIP21.08■□□□□ 0.971e-8■■■■□ 20.9
DDX39A-219ENST00000592927 CHD1O14646 1710 aa21.07■□□□□ 0.96
DDX39A-219ENST00000592927 TOPBP1Q92547 1522 aa21.05■□□□□ 0.96
DDX39A-219ENST00000592927 CCDC88BA6NC98 1476 aa20.96■□□□□ 0.95
DDX39A-219ENST00000592927 ABCC8Q09428 1581 aa20.93■□□□□ 0.94
DDX39A-219ENST00000592927 ILDR1Q86SU0 546 aaPredicted RBP20.92■□□□□ 0.94
DDX39A-219ENST00000592927 TARBP1Q13395 1621 aaKnown RBP20.89■□□□□ 0.94
DDX39A-219ENST00000592927 CLASP1Q7Z460 1538 aa20.87■□□□□ 0.93
DDX39A-219ENST00000592927 PRDM2Q13029 1718 aa20.87■□□□□ 0.93
DDX39A-219ENST00000592927 CHMP7Q8WUX9 453 aaPredicted RBP20.86■□□□□ 0.93
DDX39A-219ENST00000592927 DNMBPQ6XZF7 1577 aa20.85■□□□□ 0.93
DDX39A-219ENST00000592927 TDRD9Q8NDG6 1382 aaKnown RBP20.84■□□□□ 0.93
DDX39A-219ENST00000592927 POLA1P09884 1462 aaPredicted RBP20.79■□□□□ 0.92
DDX39A-219ENST00000592927 GAPVD1Q14C86 1478 aa20.79■□□□□ 0.92
DDX39A-219ENST00000592927 SNAPC4Q5SXM2 1469 aa20.79■□□□□ 0.92
DDX39A-219ENST00000592927 RAD54L2Q9Y4B4 1467 aa20.78■□□□□ 0.92
DDX39A-219ENST00000592927 SYNJ1O43426 1573 aa20.77■□□□□ 0.92
DDX39A-219ENST00000592927 SOGA1O94964 1423 aa20.73■□□□□ 0.91
DDX39A-219ENST00000592927 MAGI1Q96QZ7 1491 aaPredicted RBP20.66■□□□□ 0.9
DDX39A-219ENST00000592927 SYNJ2O15056 1496 aa20.63■□□□□ 0.89
DDX39A-219ENST00000592927 KDM4FA0A1W2PPD8 638 aa20.61■□□□□ 0.89
DDX39A-219ENST00000592927 GRIN2BQ13224 1484 aa20.61■□□□□ 0.89
DDX39A-219ENST00000592927 WDR97A6NE52 1622 aa20.55■□□□□ 0.88
DDX39A-219ENST00000592927 FGD5Q6ZNL6 1462 aa20.53■□□□□ 0.88
DDX39A-219ENST00000592927 ERCC6L2Q5T890 1561 aa20.53■□□□□ 0.88
DDX39A-219ENST00000592927 FAM69CQ0P6D2 419 aa20.44■□□□□ 0.86
DDX39A-219ENST00000592927 KIF13AQ9H1H9 1805 aa20.43■□□□□ 0.86
DDX39A-219ENST00000592927 CEP170Q5SW79 1584 aa20.38■□□□□ 0.85
DDX39A-219ENST00000592927 CUX1P39880 1505 aa20.37■□□□□ 0.85
DDX39A-219ENST00000592927 PBRM1Q86U86 1689 aa20.33■□□□□ 0.85
DDX39A-219ENST00000592927 GRIN2AQ12879 1464 aa20.33■□□□□ 0.85
DDX39A-219ENST00000592927 ABCC10Q5T3U5 1492 aa20.33■□□□□ 0.85
DDX39A-219ENST00000592927 NUP160Q12769 1436 aa20.3■□□□□ 0.84
DDX39A-219ENST00000592927 NPM1P06748 294 aaKnown RBP eCLIP20.29■□□□□ 0.84
DDX39A-219ENST00000592927 WRNQ14191 1432 aaPredicted RBP eCLIP20.27■□□□□ 0.832e-9■■■■■ 39.4
DDX39A-219ENST00000592927 KDM6BO15054 1643 aa20.26■□□□□ 0.83
DDX39A-219ENST00000592927 PRG4Q92954 1404 aaPredicted RBP20.23■□□□□ 0.83
DDX39A-219ENST00000592927 SHROOM2Q13796 1616 aa20.23■□□□□ 0.83
DDX39A-219ENST00000592927 ABCA10Q8WWZ4 1543 aa20.22■□□□□ 0.83
DDX39A-219ENST00000592927 ABCA5Q8WWZ7 1642 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms