RNA–Protein interactions for RNA: ENST00000592594.5

TMC6-223, Transcript of transmembrane channel like 6, human

TSL 4

Gene TMC6, Length 551 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMC6-223	ENST00000592594	NISCH	Q9Y2I1	1504 aa		40.06	■■■■■ 4
TMC6-223	ENST00000592594	CCDC180	Q9P1Z9	1646 aa		35.71	■■■■□ 3.31
TMC6-223	ENST00000592594	ABCC9	O60706	1549 aa		34.81	■■■■□ 3.16
TMC6-223	ENST00000592594	RB1CC1	Q8TDY2	1594 aa		33.49	■■■□□ 2.95
TMC6-223	ENST00000592594	NACAD	O15069	1562 aa		33.46	■■■□□ 2.95
TMC6-223	ENST00000592594	ZCCHC6	Q5VYS8	1495 aa	Known RBP	33.42	■■■□□ 2.94
TMC6-223	ENST00000592594	MYO15B	Q96JP2	1530 aa		33.27	■■■□□ 2.92
TMC6-223	ENST00000592594	DCAF8L2	P0C7V8	631 aa		33.17	■■■□□ 2.9
TMC6-223	ENST00000592594	DCAF1	Q9Y4B6	1507 aa		33.15	■■■□□ 2.9
TMC6-223	ENST00000592594	UNC13A	Q9UPW8	1703 aa		33.03	■■■□□ 2.88
TMC6-223	ENST00000592594	BICRA	Q9NZM4	1560 aa		32.64	■■■□□ 2.82
TMC6-223	ENST00000592594	SCRIB	Q14160	1630 aa		32.55	■■■□□ 2.8
TMC6-223	ENST00000592594	PABPN1	Q86U42	306 aa	Known RBP eCLIP	32.44	■■■□□ 2.78
TMC6-223	ENST00000592594	SHROOM4	Q9ULL8	1493 aa		32.11	■■■□□ 2.73
TMC6-223	ENST00000592594	DNAJC5B	Q9UF47	199 aa		31.96	■■■□□ 2.71
TMC6-223	ENST00000592594	EIF4G1	Q04637	1599 aa	Known RBP	31.68	■■■□□ 2.66
TMC6-223	ENST00000592594	CC2D2A	Q9P2K1	1620 aa		31.57	■■■□□ 2.64
TMC6-223	ENST00000592594	CECR2	Q9BXF3	1484 aa		31.25	■■■□□ 2.59
TMC6-223	ENST00000592594	SMARCA4	P51532	1647 aa		31.15	■■■□□ 2.58
TMC6-223	ENST00000592594	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	31.02	■■■□□ 2.56
TMC6-223	ENST00000592594	MROH2B	Q7Z745	1585 aa		30.92	■■■□□ 2.54
TMC6-223	ENST00000592594	ATAD2B	Q9ULI0	1458 aa		30.89	■■■□□ 2.54
TMC6-223	ENST00000592594	PEG3	Q9GZU2	1588 aa		30.84	■■■□□ 2.53
TMC6-223	ENST00000592594	NCAPD3	P42695	1498 aa		30.84	■■■□□ 2.53
TMC6-223	ENST00000592594	SMARCA2	P51531	1590 aa		30.83	■■■□□ 2.53
TMC6-223	ENST00000592594	HMGXB3	Q12766	1538 aa		30.76	■■■□□ 2.51
TMC6-223	ENST00000592594	WIZ	O95785	1651 aa		30.65	■■■□□ 2.5
TMC6-223	ENST00000592594	BAZ1B	Q9UIG0	1483 aa	Known RBP	30.59	■■■□□ 2.49
TMC6-223	ENST00000592594	RSF1	Q96T23	1441 aa	Predicted RBP	30.49	■■■□□ 2.47
TMC6-223	ENST00000592594	TOP2A	P11388	1531 aa	Known RBP	30.25	■■■□□ 2.43
TMC6-223	ENST00000592594	NES	P48681	1621 aa		30.19	■■■□□ 2.42
TMC6-223	ENST00000592594	LAMC3	Q9Y6N6	1575 aa		30.07	■■■□□ 2.4
TMC6-223	ENST00000592594	KIF21A	Q7Z4S6	1674 aa		29.94	■■■□□ 2.38
TMC6-223	ENST00000592594	ERCC6	Q03468	1493 aa		29.89	■■■□□ 2.38
TMC6-223	ENST00000592594	CADPS	Q9ULU8	1353 aa		29.89	■■■□□ 2.37
TMC6-223	ENST00000592594	CCDC88B	A6NC98	1476 aa		29.85	■■■□□ 2.37
TMC6-223	ENST00000592594	THOC2	Q8NI27	1593 aa	Known RBP	29.82	■■■□□ 2.36
TMC6-223	ENST00000592594	CFTR	P13569	1480 aa		29.79	■■■□□ 2.36
TMC6-223	ENST00000592594	PRDM2	Q13029	1718 aa		29.79	■■■□□ 2.36
TMC6-223	ENST00000592594	PDS5B	Q9NTI5	1447 aa		29.72	■■■□□ 2.35
TMC6-223	ENST00000592594	CUX2	O14529	1486 aa		29.64	■■■□□ 2.34
TMC6-223	ENST00000592594	FANCD2	Q9BXW9	1451 aa		29.61	■■■□□ 2.33
TMC6-223	ENST00000592594	CEP164	Q9UPV0	1460 aa		29.55	■■■□□ 2.32
TMC6-223	ENST00000592594	SUPT5H	O00267	1087 aa	Known RBP	29.55	■■■□□ 2.32
TMC6-223	ENST00000592594	MRC2	Q9UBG0	1479 aa		29.53	■■■□□ 2.32
TMC6-223	ENST00000592594	WDR62	O43379	1518 aa		29.51	■■■□□ 2.32
TMC6-223	ENST00000592594	URB2	Q14146	1524 aa	Known RBP	29.4	■■■□□ 2.3
TMC6-223	ENST00000592594	DNAJC5	Q9H3Z4	198 aa		29.23	■■■□□ 2.27
TMC6-223	ENST00000592594	TOPBP1	Q92547	1522 aa		29.18	■■■□□ 2.26
TMC6-223	ENST00000592594	DNMBP	Q6XZF7	1577 aa		29.16	■■■□□ 2.26
TMC6-223	ENST00000592594	ABCC8	Q09428	1581 aa		29.05	■■■□□ 2.24
TMC6-223	ENST00000592594	CUX1	P39880	1505 aa		29.01	■■■□□ 2.23
TMC6-223	ENST00000592594	TARBP1	Q13395	1621 aa	Known RBP	28.95	■■■□□ 2.23
TMC6-223	ENST00000592594	POLA1	P09884	1462 aa	Predicted RBP	28.93	■■■□□ 2.22
TMC6-223	ENST00000592594	IFT140	Q96RY7	1462 aa		28.91	■■■□□ 2.22
TMC6-223	ENST00000592594	ZNF608	Q9ULD9	1512 aa	Predicted RBP	28.89	■■■□□ 2.21
TMC6-223	ENST00000592594	FGD5	Q6ZNL6	1462 aa		28.85	■■■□□ 2.21
TMC6-223	ENST00000592594	EIF4G3	O43432	1585 aa	Known RBP	28.83	■■■□□ 2.21
TMC6-223	ENST00000592594	BIVM-ERCC5	R4GMW8	1640 aa		28.81	■■■□□ 2.2
TMC6-223	ENST00000592594	WDR97	A6NE52	1622 aa		28.8	■■■□□ 2.2
TMC6-223	ENST00000592594	SYNJ1	O43426	1573 aa		28.8	■■■□□ 2.2
TMC6-223	ENST00000592594	RAD54L2	Q9Y4B4	1467 aa		28.8	■■■□□ 2.2
TMC6-223	ENST00000592594	TOP2B	Q02880	1626 aa		28.76	■■■□□ 2.19
TMC6-223	ENST00000592594	SOGA1	O94964	1423 aa		28.7	■■■□□ 2.19
TMC6-223	ENST00000592594	WRN	Q14191	1432 aa	Predicted RBP eCLIP	28.69	■■■□□ 2.18
TMC6-223	ENST00000592594	AQR	O60306	1485 aa	Known RBP eCLIP	28.66	■■■□□ 2.18	3e-9	■■■■■ 28.7
TMC6-223	ENST00000592594	ABCA5	Q8WWZ7	1642 aa		28.58	■■■□□ 2.17
TMC6-223	ENST00000592594	ABCA10	Q8WWZ4	1543 aa		28.57	■■■□□ 2.16
TMC6-223	ENST00000592594	PBRM1	Q86U86	1689 aa		28.55	■■■□□ 2.16
TMC6-223	ENST00000592594	TDRD9	Q8NDG6	1382 aa	Known RBP	28.55	■■■□□ 2.16
TMC6-223	ENST00000592594	CHD1	O14646	1710 aa		28.52	■■■□□ 2.16
TMC6-223	ENST00000592594	SNAPC4	Q5SXM2	1469 aa		28.42	■■■□□ 2.14
TMC6-223	ENST00000592594	GAPVD1	Q14C86	1478 aa		28.41	■■■□□ 2.14
TMC6-223	ENST00000592594	GRIN2B	Q13224	1484 aa		28.4	■■■□□ 2.14
TMC6-223	ENST00000592594	MAGI1	Q96QZ7	1491 aa	Predicted RBP	28.34	■■■□□ 2.13
TMC6-223	ENST00000592594	ADAMTS12	P58397	1594 aa		28.27	■■■□□ 2.12
TMC6-223	ENST00000592594	OSCAR	Q8IYS5	282 aa		28.25	■■■□□ 2.11
TMC6-223	ENST00000592594	SYNJ2	O15056	1496 aa		28.23	■■■□□ 2.11
TMC6-223	ENST00000592594	ERICH3	Q5RHP9	1530 aa		28.22	■■■□□ 2.11
TMC6-223	ENST00000592594	CLASP1	Q7Z460	1538 aa		28.15	■■■□□ 2.1
TMC6-223	ENST00000592594	FBLN2	P98095	1184 aa		28.12	■■■□□ 2.09
TMC6-223	ENST00000592594	GRIN2A	Q12879	1464 aa		28.09	■■■□□ 2.09
TMC6-223	ENST00000592594	RIMBP3C	A6NJZ7	1639 aa		28.09	■■■□□ 2.09
TMC6-223	ENST00000592594	RIMBP3B	A6NNM3	1639 aa		28.09	■■■□□ 2.09
TMC6-223	ENST00000592594	RIMBP3	Q9UFD9	1639 aa		28.09	■■■□□ 2.09
TMC6-223	ENST00000592594	FHAD1	B1AJZ9	1412 aa		28.06	■■■□□ 2.08
TMC6-223	ENST00000592594	CEP170	Q5SW79	1584 aa		28.05	■■■□□ 2.08
TMC6-223	ENST00000592594	KIF27	Q86VH2	1401 aa		28.05	■■■□□ 2.08
TMC6-223	ENST00000592594	CHMP7	Q8WUX9	453 aa	Predicted RBP	28.05	■■■□□ 2.08
TMC6-223	ENST00000592594	ARHGEF11	O15085	1522 aa		28.02	■■■□□ 2.08
TMC6-223	ENST00000592594	CUL7	Q14999	1698 aa		28.01	■■■□□ 2.07
TMC6-223	ENST00000592594	NUP160	Q12769	1436 aa		27.98	■■■□□ 2.07
TMC6-223	ENST00000592594	IGF1R	P08069	1367 aa		27.98	■■■□□ 2.07
TMC6-223	ENST00000592594	RUSC2	Q8N2Y8	1516 aa		27.97	■■■□□ 2.07
TMC6-223	ENST00000592594	TRIM41	Q8WV44	630 aa		27.87	■■■□□ 2.05
TMC6-223	ENST00000592594	SHROOM2	Q13796	1616 aa		27.87	■■■□□ 2.05
TMC6-223	ENST00000592594	ARAP1	Q96P48	1450 aa		27.82	■■■□□ 2.04
TMC6-223	ENST00000592594	ERCC6L2	Q5T890	1561 aa		27.81	■■■□□ 2.04
TMC6-223	ENST00000592594	CARMIL1	Q5VZK9	1371 aa		27.77	■■■□□ 2.04
TMC6-223	ENST00000592594	CHIC1	Q5VXU3	224 aa		27.65	■■■□□ 2.02

Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms