RNA–Protein interactions for RNA: ENST00000592106.5

VMP1-214, Transcript of vacuole membrane protein 1, humanhuman

TSL 5

Gene VMP1, Length 341 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-214ENST00000592106 NISCHQ9Y2I1 1504 aa25.23■■□□□ 1.63
VMP1-214ENST00000592106 AEBP2Q6ZN18 517 aaPredicted RBP24.5■■□□□ 1.51
VMP1-214ENST00000592106 CHIC1Q5VXU3 224 aa23.99■■□□□ 1.43
VMP1-214ENST00000592106 CCDC180Q9P1Z9 1646 aa22.69■■□□□ 1.22
VMP1-214ENST00000592106 ABCC9O60706 1549 aa22.54■■□□□ 1.2
VMP1-214ENST00000592106 RB1CC1Q8TDY2 1594 aa21.56■■□□□ 1.04
VMP1-214ENST00000592106 NACADO15069 1562 aa21.42■■□□□ 1.02
VMP1-214ENST00000592106 DCAF8L2P0C7V8 631 aa21.23■□□□□ 0.99
VMP1-214ENST00000592106 MYO15BQ96JP2 1530 aa21.15■□□□□ 0.98
VMP1-214ENST00000592106 PHF23Q9BUL5 403 aaPredicted RBP21.01■□□□□ 0.95
VMP1-214ENST00000592106 UNC13AQ9UPW8 1703 aa20.98■□□□□ 0.95
VMP1-214ENST00000592106 SENP3Q9H4L4 574 aaPredicted RBP20.96■□□□□ 0.95
VMP1-214ENST00000592106 DNAJC5BQ9UF47 199 aa20.95■□□□□ 0.94
VMP1-214ENST00000592106 ZCCHC6Q5VYS8 1495 aaKnown RBP20.94■□□□□ 0.94
VMP1-214ENST00000592106 PABPN1Q86U42 306 aaKnown RBP eCLIP20.94■□□□□ 0.94
VMP1-214ENST00000592106 DCAF1Q9Y4B6 1507 aa20.89■□□□□ 0.94
VMP1-214ENST00000592106 BICRAQ9NZM4 1560 aa20.83■□□□□ 0.92
VMP1-214ENST00000592106 SHROOM4Q9ULL8 1493 aa20.71■□□□□ 0.91
VMP1-214ENST00000592106 SCRIBQ14160 1630 aa20.62■□□□□ 0.89
VMP1-214ENST00000592106 CC2D2AQ9P2K1 1620 aa20.37■□□□□ 0.85
VMP1-214ENST00000592106 EIF4G1Q04637 1599 aaKnown RBP20.37■□□□□ 0.85
VMP1-214ENST00000592106 CECR2Q9BXF3 1484 aa20.32■□□□□ 0.84
VMP1-214ENST00000592106 NCAPD3P42695 1498 aa19.73■□□□□ 0.75
VMP1-214ENST00000592106 DNAJC5Q9H3Z4 198 aa19.71■□□□□ 0.75
VMP1-214ENST00000592106 SMARCA4P51532 1647 aa19.69■□□□□ 0.74
VMP1-214ENST00000592106 SMARCA2P51531 1590 aa19.68■□□□□ 0.74
VMP1-214ENST00000592106 ATAD2BQ9ULI0 1458 aa19.67■□□□□ 0.74
VMP1-214ENST00000592106 HMGXB3Q12766 1538 aa19.64■□□□□ 0.73
VMP1-214ENST00000592106 BAZ1AQ9NRL2 1556 aaPredicted RBP19.64■□□□□ 0.73
VMP1-214ENST00000592106 ERCC6Q03468 1493 aa19.53■□□□□ 0.72
VMP1-214ENST00000592106 BAZ1BQ9UIG0 1483 aaKnown RBP19.53■□□□□ 0.72
VMP1-214ENST00000592106 PLPPR3Q6T4P5 718 aa19.52■□□□□ 0.72
VMP1-214ENST00000592106 PEG3Q9GZU2 1588 aa19.5■□□□□ 0.71
VMP1-214ENST00000592106 CUX2O14529 1486 aa19.48■□□□□ 0.71
VMP1-214ENST00000592106 MROH2BQ7Z745 1585 aa19.4■□□□□ 0.7
VMP1-214ENST00000592106 FOXD1Q16676 465 aa19.35■□□□□ 0.69
VMP1-214ENST00000592106 NESP48681 1621 aa19.34■□□□□ 0.69
VMP1-214ENST00000592106 LAMC3Q9Y6N6 1575 aa19.32■□□□□ 0.68
VMP1-214ENST00000592106 PDS5BQ9NTI5 1447 aa19.21■□□□□ 0.67
VMP1-214ENST00000592106 THOC2Q8NI27 1593 aaKnown RBP19.2■□□□□ 0.66
VMP1-214ENST00000592106 WIZO95785 1651 aa19.18■□□□□ 0.66
VMP1-214ENST00000592106 KIF21AQ7Z4S6 1674 aa19.14■□□□□ 0.66
VMP1-214ENST00000592106 CADPSQ9ULU8 1353 aa19.13■□□□□ 0.65
VMP1-214ENST00000592106 RSF1Q96T23 1441 aaPredicted RBP19.03■□□□□ 0.64
VMP1-214ENST00000592106 MRC2Q9UBG0 1479 aa19.03■□□□□ 0.64
VMP1-214ENST00000592106 TOP2AP11388 1531 aaKnown RBP19.01■□□□□ 0.63
VMP1-214ENST00000592106 CEP164Q9UPV0 1460 aa18.98■□□□□ 0.63
VMP1-214ENST00000592106 WDR62O43379 1518 aa18.96■□□□□ 0.63
VMP1-214ENST00000592106 CFTRP13569 1480 aa18.93■□□□□ 0.62
VMP1-214ENST00000592106 FANCD2Q9BXW9 1451 aa18.93■□□□□ 0.62
VMP1-214ENST00000592106 PRDM2Q13029 1718 aa18.8■□□□□ 0.6
VMP1-214ENST00000592106 URB2Q14146 1524 aaKnown RBP18.74■□□□□ 0.59
VMP1-214ENST00000592106 CCDC88BA6NC98 1476 aa18.72■□□□□ 0.59
VMP1-214ENST00000592106 ABCC8Q09428 1581 aa18.6■□□□□ 0.57
VMP1-214ENST00000592106 IFT140Q96RY7 1462 aa18.59■□□□□ 0.57
VMP1-214ENST00000592106 TOPBP1Q92547 1522 aa18.57■□□□□ 0.56
VMP1-214ENST00000592106 ADRA2BP18089 450 aa18.54■□□□□ 0.56
VMP1-214ENST00000592106 OSCARQ8IYS5 282 aa18.54■□□□□ 0.56
VMP1-214ENST00000592106 PPP6R1Q9UPN7 881 aa18.54■□□□□ 0.56
VMP1-214ENST00000592106 DNMBPQ6XZF7 1577 aa18.54■□□□□ 0.56
VMP1-214ENST00000592106 TRIM41Q8WV44 630 aa18.5■□□□□ 0.55
VMP1-214ENST00000592106 ZNF608Q9ULD9 1512 aaPredicted RBP18.47■□□□□ 0.55
VMP1-214ENST00000592106 EIF4G3O43432 1585 aaKnown RBP18.45■□□□□ 0.54
VMP1-214ENST00000592106 POLA1P09884 1462 aaPredicted RBP18.38■□□□□ 0.53
VMP1-214ENST00000592106 TARBP1Q13395 1621 aaKnown RBP18.38■□□□□ 0.53
VMP1-214ENST00000592106 WDR97A6NE52 1622 aa18.31■□□□□ 0.52
VMP1-214ENST00000592106 AQRO60306 1485 aaKnown RBP eCLIP18.31■□□□□ 0.52
VMP1-214ENST00000592106 SOGA1O94964 1423 aa18.3■□□□□ 0.52
VMP1-214ENST00000592106 RIMBP3CA6NJZ7 1639 aa18.3■□□□□ 0.52
VMP1-214ENST00000592106 RIMBP3BA6NNM3 1639 aa18.3■□□□□ 0.52
VMP1-214ENST00000592106 RIMBP3Q9UFD9 1639 aa18.3■□□□□ 0.52
VMP1-214ENST00000592106 FGD5Q6ZNL6 1462 aa18.28■□□□□ 0.52
VMP1-214ENST00000592106 CHD1O14646 1710 aa18.28■□□□□ 0.52
VMP1-214ENST00000592106 RAD54L2Q9Y4B4 1467 aa18.27■□□□□ 0.52
VMP1-214ENST00000592106 PIAS4Q8N2W9 510 aaPredicted RBP18.27■□□□□ 0.52
VMP1-214ENST00000592106 ARHGEF11O15085 1522 aa18.25■□□□□ 0.51
VMP1-214ENST00000592106 CUX1P39880 1505 aa18.25■□□□□ 0.51
VMP1-214ENST00000592106 SUPT5HO00267 1087 aaKnown RBP18.23■□□□□ 0.51
VMP1-214ENST00000592106 FBLN2P98095 1184 aa18.22■□□□□ 0.51
VMP1-214ENST00000592106 TDRD9Q8NDG6 1382 aaKnown RBP18.21■□□□□ 0.51
VMP1-214ENST00000592106 SNAPC4Q5SXM2 1469 aa18.2■□□□□ 0.5
VMP1-214ENST00000592106 MAGI1Q96QZ7 1491 aaPredicted RBP18.18■□□□□ 0.5
VMP1-214ENST00000592106 GRIN2BQ13224 1484 aa18.17■□□□□ 0.5
VMP1-214ENST00000592106 SYNJ1O43426 1573 aa18.13■□□□□ 0.49
VMP1-214ENST00000592106 CHMP7Q8WUX9 453 aaPredicted RBP18.12■□□□□ 0.49
VMP1-214ENST00000592106 PBRM1Q86U86 1689 aa18.1■□□□□ 0.49
VMP1-214ENST00000592106 SYNJ2O15056 1496 aa18.1■□□□□ 0.49
VMP1-214ENST00000592106 ABCA10Q8WWZ4 1543 aa18.08■□□□□ 0.49
VMP1-214ENST00000592106 GAPVD1Q14C86 1478 aa18.08■□□□□ 0.49
VMP1-214ENST00000592106 CLASP1Q7Z460 1538 aa18.07■□□□□ 0.48
VMP1-214ENST00000592106 ARAP1Q96P48 1450 aa18.07■□□□□ 0.48
VMP1-214ENST00000592106 CYB5RLQ6IPT4 315 aa18.06■□□□□ 0.48
VMP1-214ENST00000592106 ABCA5Q8WWZ7 1642 aa18.05■□□□□ 0.48
VMP1-214ENST00000592106 WRNQ14191 1432 aaPredicted RBP eCLIP18.04■□□□□ 0.48
VMP1-214ENST00000592106 BIVM-ERCC5R4GMW8 1640 aa18.01■□□□□ 0.47
VMP1-214ENST00000592106 TOP2BQ02880 1626 aa18.01■□□□□ 0.47
VMP1-214ENST00000592106 MSH5O43196 834 aa17.99■□□□□ 0.47
VMP1-214ENST00000592106 ADAMTS12P58397 1594 aa17.93■□□□□ 0.46
VMP1-214ENST00000592106 GRIN2AQ12879 1464 aa17.92■□□□□ 0.46
VMP1-214ENST00000592106 TRHP20396 242 aaPredicted RBP17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 112.3 ms