RNA–Protein interactions for RNA: ENST00000591960.1

RDH13-219, Transcript of retinol dehydrogenase 13, humanhuman

TSL 5

Gene RDH13, Length 1,328 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RDH13-219ENST00000591960 NISCHQ9Y2I1 1504 aa33.4■■■□□ 2.94
RDH13-219ENST00000591960 CCDC180Q9P1Z9 1646 aa29.73■■■□□ 2.35
RDH13-219ENST00000591960 ABCC9O60706 1549 aa29.16■■■□□ 2.26
RDH13-219ENST00000591960 RB1CC1Q8TDY2 1594 aa28■■■□□ 2.07
RDH13-219ENST00000591960 NACADO15069 1562 aa27.95■■■□□ 2.06
RDH13-219ENST00000591960 DCAF8L2P0C7V8 631 aa27.87■■■□□ 2.05
RDH13-219ENST00000591960 ZCCHC6Q5VYS8 1495 aaKnown RBP27.82■■■□□ 2.04
RDH13-219ENST00000591960 MYO15BQ96JP2 1530 aa27.76■■■□□ 2.04
RDH13-219ENST00000591960 DCAF1Q9Y4B6 1507 aa27.63■■■□□ 2.01
RDH13-219ENST00000591960 UNC13AQ9UPW8 1703 aa27.45■■□□□ 1.99
RDH13-219ENST00000591960 BICRAQ9NZM4 1560 aa27.23■■□□□ 1.95
RDH13-219ENST00000591960 PABPN1Q86U42 306 aaKnown RBP eCLIP27.22■■□□□ 1.95
RDH13-219ENST00000591960 SCRIBQ14160 1630 aa27.14■■□□□ 1.93
RDH13-219ENST00000591960 DNAJC5BQ9UF47 199 aa26.88■■□□□ 1.89
RDH13-219ENST00000591960 SHROOM4Q9ULL8 1493 aa26.85■■□□□ 1.89
RDH13-219ENST00000591960 EIF4G1Q04637 1599 aaKnown RBP26.48■■□□□ 1.83
RDH13-219ENST00000591960 CC2D2AQ9P2K1 1620 aa26.39■■□□□ 1.81
RDH13-219ENST00000591960 CECR2Q9BXF3 1484 aa26.19■■□□□ 1.78
RDH13-219ENST00000591960 SMARCA4P51532 1647 aa25.95■■□□□ 1.74
RDH13-219ENST00000591960 BAZ1AQ9NRL2 1556 aaPredicted RBP25.88■■□□□ 1.73
RDH13-219ENST00000591960 ATAD2BQ9ULI0 1458 aa25.82■■□□□ 1.72
RDH13-219ENST00000591960 NCAPD3P42695 1498 aa25.8■■□□□ 1.72
RDH13-219ENST00000591960 MROH2BQ7Z745 1585 aa25.77■■□□□ 1.72
RDH13-219ENST00000591960 SMARCA2P51531 1590 aa25.75■■□□□ 1.71
RDH13-219ENST00000591960 PEG3Q9GZU2 1588 aa25.69■■□□□ 1.7
RDH13-219ENST00000591960 HMGXB3Q12766 1538 aa25.67■■□□□ 1.7
RDH13-219ENST00000591960 BAZ1BQ9UIG0 1483 aaKnown RBP25.58■■□□□ 1.69
RDH13-219ENST00000591960 WIZO95785 1651 aa25.49■■□□□ 1.67
RDH13-219ENST00000591960 RSF1Q96T23 1441 aaPredicted RBP25.42■■□□□ 1.66
RDH13-219ENST00000591960 NESP48681 1621 aa25.24■■□□□ 1.63
RDH13-219ENST00000591960 TOP2AP11388 1531 aaKnown RBP25.19■■□□□ 1.62
RDH13-219ENST00000591960 LAMC3Q9Y6N6 1575 aa25.13■■□□□ 1.61
RDH13-219ENST00000591960 ERCC6Q03468 1493 aa25.1■■□□□ 1.61
RDH13-219ENST00000591960 CADPSQ9ULU8 1353 aa25.03■■□□□ 1.6
RDH13-219ENST00000591960 KIF21AQ7Z4S6 1674 aa24.95■■□□□ 1.58
RDH13-219ENST00000591960 PDS5BQ9NTI5 1447 aa24.93■■□□□ 1.58
RDH13-219ENST00000591960 CCDC88BA6NC98 1476 aa24.9■■□□□ 1.58
RDH13-219ENST00000591960 THOC2Q8NI27 1593 aaKnown RBP24.88■■□□□ 1.57
RDH13-219ENST00000591960 CUX2O14529 1486 aa24.88■■□□□ 1.57
RDH13-219ENST00000591960 CFTRP13569 1480 aa24.88■■□□□ 1.57
RDH13-219ENST00000591960 FANCD2Q9BXW9 1451 aa24.75■■□□□ 1.55
RDH13-219ENST00000591960 PRDM2Q13029 1718 aa24.72■■□□□ 1.55
RDH13-219ENST00000591960 CEP164Q9UPV0 1460 aa24.72■■□□□ 1.55
RDH13-219ENST00000591960 MRC2Q9UBG0 1479 aa24.7■■□□□ 1.55
RDH13-219ENST00000591960 SUPT5HO00267 1087 aaKnown RBP24.67■■□□□ 1.54
RDH13-219ENST00000591960 WDR62O43379 1518 aa24.65■■□□□ 1.54
RDH13-219ENST00000591960 URB2Q14146 1524 aaKnown RBP24.55■■□□□ 1.52
RDH13-219ENST00000591960 TOPBP1Q92547 1522 aa24.37■■□□□ 1.49
RDH13-219ENST00000591960 DNMBPQ6XZF7 1577 aa24.33■■□□□ 1.48
RDH13-219ENST00000591960 ABCC8Q09428 1581 aa24.3■■□□□ 1.48
RDH13-219ENST00000591960 IFT140Q96RY7 1462 aa24.21■■□□□ 1.47
RDH13-219ENST00000591960 DNAJC5Q9H3Z4 198 aa24.2■■□□□ 1.46
RDH13-219ENST00000591960 CUX1P39880 1505 aa24.18■■□□□ 1.46
RDH13-219ENST00000591960 POLA1P09884 1462 aaPredicted RBP24.16■■□□□ 1.46
RDH13-219ENST00000591960 ZNF608Q9ULD9 1512 aaPredicted RBP24.14■■□□□ 1.46
RDH13-219ENST00000591960 TARBP1Q13395 1621 aaKnown RBP24.13■■□□□ 1.45
RDH13-219ENST00000591960 FGD5Q6ZNL6 1462 aa24.08■■□□□ 1.45
RDH13-219ENST00000591960 RAD54L2Q9Y4B4 1467 aa24.06■■□□□ 1.44
RDH13-219ENST00000591960 EIF4G3O43432 1585 aaKnown RBP24.05■■□□□ 1.44
RDH13-219ENST00000591960 SOGA1O94964 1423 aa24.02■■□□□ 1.44
RDH13-219ENST00000591960 AQRO60306 1485 aaKnown RBP eCLIP23.98■■□□□ 1.431e-9■■■■■ 45.4
RDH13-219ENST00000591960 SYNJ1O43426 1573 aa23.95■■□□□ 1.42
RDH13-219ENST00000591960 WRNQ14191 1432 aaPredicted RBP eCLIP23.94■■□□□ 1.42
RDH13-219ENST00000591960 BIVM-ERCC5R4GMW8 1640 aa23.94■■□□□ 1.42
RDH13-219ENST00000591960 TOP2BQ02880 1626 aa23.93■■□□□ 1.42
RDH13-219ENST00000591960 WDR97A6NE52 1622 aa23.93■■□□□ 1.42
RDH13-219ENST00000591960 TDRD9Q8NDG6 1382 aaKnown RBP23.91■■□□□ 1.42
RDH13-219ENST00000591960 ABCA10Q8WWZ4 1543 aa23.85■■□□□ 1.41
RDH13-219ENST00000591960 OSCARQ8IYS5 282 aa23.8■■□□□ 1.4
RDH13-219ENST00000591960 ABCA5Q8WWZ7 1642 aa23.78■■□□□ 1.4
RDH13-219ENST00000591960 CHD1O14646 1710 aa23.77■■□□□ 1.4
RDH13-219ENST00000591960 SNAPC4Q5SXM2 1469 aa23.76■■□□□ 1.39
RDH13-219ENST00000591960 GRIN2BQ13224 1484 aa23.75■■□□□ 1.39
RDH13-219ENST00000591960 GAPVD1Q14C86 1478 aa23.75■■□□□ 1.39
RDH13-219ENST00000591960 PBRM1Q86U86 1689 aa23.75■■□□□ 1.39
RDH13-219ENST00000591960 MAGI1Q96QZ7 1491 aaPredicted RBP23.7■■□□□ 1.38
RDH13-219ENST00000591960 AEBP2Q6ZN18 517 aaPredicted RBP23.67■■□□□ 1.38
RDH13-219ENST00000591960 FBLN2P98095 1184 aa23.65■■□□□ 1.38
RDH13-219ENST00000591960 SYNJ2O15056 1496 aa23.61■■□□□ 1.37
RDH13-219ENST00000591960 CHMP7Q8WUX9 453 aaPredicted RBP23.57■■□□□ 1.36
RDH13-219ENST00000591960 ADAMTS12P58397 1594 aa23.55■■□□□ 1.36
RDH13-219ENST00000591960 ERICH3Q5RHP9 1530 aa23.54■■□□□ 1.36
RDH13-219ENST00000591960 CHIC1Q5VXU3 224 aa23.51■■□□□ 1.35
RDH13-219ENST00000591960 RIMBP3CA6NJZ7 1639 aa23.5■■□□□ 1.35
RDH13-219ENST00000591960 RIMBP3BA6NNM3 1639 aa23.5■■□□□ 1.35
RDH13-219ENST00000591960 RIMBP3Q9UFD9 1639 aa23.5■■□□□ 1.35
RDH13-219ENST00000591960 CLASP1Q7Z460 1538 aa23.5■■□□□ 1.35
RDH13-219ENST00000591960 ARHGEF11O15085 1522 aa23.48■■□□□ 1.35
RDH13-219ENST00000591960 FHAD1B1AJZ9 1412 aa23.47■■□□□ 1.35
RDH13-219ENST00000591960 GRIN2AQ12879 1464 aa23.46■■□□□ 1.35
RDH13-219ENST00000591960 KIF27Q86VH2 1401 aa23.43■■□□□ 1.34
RDH13-219ENST00000591960 CEP170Q5SW79 1584 aa23.38■■□□□ 1.33
RDH13-219ENST00000591960 IGF1RP08069 1367 aa23.38■■□□□ 1.33
RDH13-219ENST00000591960 NUP160Q12769 1436 aa23.38■■□□□ 1.33
RDH13-219ENST00000591960 TRIM41Q8WV44 630 aa23.36■■□□□ 1.33
RDH13-219ENST00000591960 CUL7Q14999 1698 aa23.31■■□□□ 1.32
RDH13-219ENST00000591960 ARAP1Q96P48 1450 aa23.3■■□□□ 1.32
RDH13-219ENST00000591960 RUSC2Q8N2Y8 1516 aa23.27■■□□□ 1.32
RDH13-219ENST00000591960 SHROOM2Q13796 1616 aa23.22■■□□□ 1.31
RDH13-219ENST00000591960 CYB5RLQ6IPT4 315 aa23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms