RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 NISCHQ9Y2I1 1504 aa28.89■■■□□ 2.22
LIG3-213ENST00000590630 CCDC180Q9P1Z9 1646 aa25.74■■□□□ 1.71
LIG3-213ENST00000590630 ABCC9O60706 1549 aa25.06■■□□□ 1.6
LIG3-213ENST00000590630 RB1CC1Q8TDY2 1594 aa24.18■■□□□ 1.46
LIG3-213ENST00000590630 NACADO15069 1562 aa24.16■■□□□ 1.46
LIG3-213ENST00000590630 ZCCHC6Q5VYS8 1495 aaKnown RBP24.08■■□□□ 1.45
LIG3-213ENST00000590630 MYO15BQ96JP2 1530 aa24.05■■□□□ 1.44
LIG3-213ENST00000590630 DCAF8L2P0C7V8 631 aa24.04■■□□□ 1.44
LIG3-213ENST00000590630 DCAF1Q9Y4B6 1507 aa23.95■■□□□ 1.43
LIG3-213ENST00000590630 UNC13AQ9UPW8 1703 aa23.67■■□□□ 1.38
LIG3-213ENST00000590630 SCRIBQ14160 1630 aa23.43■■□□□ 1.34
LIG3-213ENST00000590630 BICRAQ9NZM4 1560 aa23.43■■□□□ 1.34
LIG3-213ENST00000590630 PABPN1Q86U42 306 aaKnown RBP eCLIP23.38■■□□□ 1.33
LIG3-213ENST00000590630 SHROOM4Q9ULL8 1493 aa23.24■■□□□ 1.31
LIG3-213ENST00000590630 DNAJC5BQ9UF47 199 aa22.92■■□□□ 1.26
LIG3-213ENST00000590630 EIF4G1Q04637 1599 aaKnown RBP22.81■■□□□ 1.24
LIG3-213ENST00000590630 CC2D2AQ9P2K1 1620 aa22.71■■□□□ 1.23
LIG3-213ENST00000590630 CECR2Q9BXF3 1484 aa22.53■■□□□ 1.2
LIG3-213ENST00000590630 SMARCA4P51532 1647 aa22.43■■□□□ 1.18
LIG3-213ENST00000590630 BAZ1AQ9NRL2 1556 aaPredicted RBP22.42■■□□□ 1.18
LIG3-213ENST00000590630 SMARCA2P51531 1590 aa22.29■■□□□ 1.16
LIG3-213ENST00000590630 ATAD2BQ9ULI0 1458 aa22.28■■□□□ 1.16
LIG3-213ENST00000590630 NCAPD3P42695 1498 aa22.27■■□□□ 1.16
LIG3-213ENST00000590630 MROH2BQ7Z745 1585 aa22.25■■□□□ 1.15
LIG3-213ENST00000590630 PEG3Q9GZU2 1588 aa22.24■■□□□ 1.15
LIG3-213ENST00000590630 HMGXB3Q12766 1538 aa22.2■■□□□ 1.14
LIG3-213ENST00000590630 BAZ1BQ9UIG0 1483 aaKnown RBP22.11■■□□□ 1.13
LIG3-213ENST00000590630 WIZO95785 1651 aa22.04■■□□□ 1.12
LIG3-213ENST00000590630 RSF1Q96T23 1441 aaPredicted RBP22■■□□□ 1.11
LIG3-213ENST00000590630 TOP2AP11388 1531 aaKnown RBP21.81■■□□□ 1.08
LIG3-213ENST00000590630 LAMC3Q9Y6N6 1575 aa21.71■■□□□ 1.07
LIG3-213ENST00000590630 NESP48681 1621 aa21.69■■□□□ 1.06
LIG3-213ENST00000590630 ERCC6Q03468 1493 aa21.62■■□□□ 1.05
LIG3-213ENST00000590630 CADPSQ9ULU8 1353 aa21.61■■□□□ 1.05
LIG3-213ENST00000590630 PDS5BQ9NTI5 1447 aa21.54■■□□□ 1.04
LIG3-213ENST00000590630 CCDC88BA6NC98 1476 aa21.52■■□□□ 1.03
LIG3-213ENST00000590630 CFTRP13569 1480 aa21.5■■□□□ 1.03
LIG3-213ENST00000590630 KIF21AQ7Z4S6 1674 aa21.5■■□□□ 1.03
LIG3-213ENST00000590630 PRDM2Q13029 1718 aa21.43■■□□□ 1.02
LIG3-213ENST00000590630 SUPT5HO00267 1087 aaKnown RBP21.42■■□□□ 1.02
LIG3-213ENST00000590630 THOC2Q8NI27 1593 aaKnown RBP21.4■■□□□ 1.02
LIG3-213ENST00000590630 CUX2O14529 1486 aa21.4■■□□□ 1.02
LIG3-213ENST00000590630 FANCD2Q9BXW9 1451 aa21.37■■□□□ 1.01
LIG3-213ENST00000590630 CEP164Q9UPV0 1460 aa21.35■■□□□ 1.01
LIG3-213ENST00000590630 MRC2Q9UBG0 1479 aa21.31■■□□□ 1
LIG3-213ENST00000590630 WDR62O43379 1518 aa21.25■□□□□ 0.99
LIG3-213ENST00000590630 URB2Q14146 1524 aaKnown RBP21.14■□□□□ 0.98
LIG3-213ENST00000590630 ABCC8Q09428 1581 aa21.06■□□□□ 0.96
LIG3-213ENST00000590630 TOPBP1Q92547 1522 aa21.04■□□□□ 0.96
LIG3-213ENST00000590630 DNMBPQ6XZF7 1577 aa21.03■□□□□ 0.96
LIG3-213ENST00000590630 IFT140Q96RY7 1462 aa20.9■□□□□ 0.94
LIG3-213ENST00000590630 CUX1P39880 1505 aa20.88■□□□□ 0.93
LIG3-213ENST00000590630 POLA1P09884 1462 aaPredicted RBP20.85■□□□□ 0.93
LIG3-213ENST00000590630 TARBP1Q13395 1621 aaKnown RBP20.82■□□□□ 0.92
LIG3-213ENST00000590630 FGD5Q6ZNL6 1462 aa20.81■□□□□ 0.92
LIG3-213ENST00000590630 ZNF608Q9ULD9 1512 aaPredicted RBP20.77■□□□□ 0.92
LIG3-213ENST00000590630 WRNQ14191 1432 aaPredicted RBP eCLIP20.76■□□□□ 0.91
LIG3-213ENST00000590630 BIVM-ERCC5R4GMW8 1640 aa20.75■□□□□ 0.91
LIG3-213ENST00000590630 SOGA1O94964 1423 aa20.75■□□□□ 0.91
LIG3-213ENST00000590630 TOP2BQ02880 1626 aa20.75■□□□□ 0.91
LIG3-213ENST00000590630 EIF4G3O43432 1585 aaKnown RBP20.74■□□□□ 0.91
LIG3-213ENST00000590630 RAD54L2Q9Y4B4 1467 aa20.73■□□□□ 0.91
LIG3-213ENST00000590630 SYNJ1O43426 1573 aa20.72■□□□□ 0.91
LIG3-213ENST00000590630 WDR97A6NE52 1622 aa20.71■□□□□ 0.91
LIG3-213ENST00000590630 DNAJC5Q9H3Z4 198 aa20.66■□□□□ 0.9
LIG3-213ENST00000590630 AQRO60306 1485 aaKnown RBP eCLIP20.65■□□□□ 0.91e-7■■■■■ 47.9
LIG3-213ENST00000590630 ABCA10Q8WWZ4 1543 aa20.63■□□□□ 0.89
LIG3-213ENST00000590630 TDRD9Q8NDG6 1382 aaKnown RBP20.61■□□□□ 0.89
LIG3-213ENST00000590630 ABCA5Q8WWZ7 1642 aa20.56■□□□□ 0.88
LIG3-213ENST00000590630 PBRM1Q86U86 1689 aa20.54■□□□□ 0.88
LIG3-213ENST00000590630 GRIN2BQ13224 1484 aa20.53■□□□□ 0.88
LIG3-213ENST00000590630 GAPVD1Q14C86 1478 aa20.53■□□□□ 0.88
LIG3-213ENST00000590630 MAGI1Q96QZ7 1491 aaPredicted RBP20.5■□□□□ 0.87
LIG3-213ENST00000590630 CHD1O14646 1710 aa20.49■□□□□ 0.87
LIG3-213ENST00000590630 OSCARQ8IYS5 282 aa20.48■□□□□ 0.87
LIG3-213ENST00000590630 SNAPC4Q5SXM2 1469 aa20.48■□□□□ 0.87
LIG3-213ENST00000590630 SYNJ2O15056 1496 aa20.4■□□□□ 0.86
LIG3-213ENST00000590630 ERICH3Q5RHP9 1530 aa20.39■□□□□ 0.85
LIG3-213ENST00000590630 FBLN2P98095 1184 aa20.38■□□□□ 0.85
LIG3-213ENST00000590630 ADAMTS12P58397 1594 aa20.35■□□□□ 0.85
LIG3-213ENST00000590630 CHMP7Q8WUX9 453 aaPredicted RBP20.35■□□□□ 0.85
LIG3-213ENST00000590630 KIF27Q86VH2 1401 aa20.33■□□□□ 0.84
LIG3-213ENST00000590630 FHAD1B1AJZ9 1412 aa20.29■□□□□ 0.84
LIG3-213ENST00000590630 GRIN2AQ12879 1464 aa20.27■□□□□ 0.84
LIG3-213ENST00000590630 TRIM41Q8WV44 630 aa20.25■□□□□ 0.83
LIG3-213ENST00000590630 CLASP1Q7Z460 1538 aa20.24■□□□□ 0.83
LIG3-213ENST00000590630 CUL7Q14999 1698 aa20.24■□□□□ 0.83
LIG3-213ENST00000590630 IGF1RP08069 1367 aa20.21■□□□□ 0.83
LIG3-213ENST00000590630 RIMBP3CA6NJZ7 1639 aa20.18■□□□□ 0.82
LIG3-213ENST00000590630 RIMBP3BA6NNM3 1639 aa20.18■□□□□ 0.82
LIG3-213ENST00000590630 RIMBP3Q9UFD9 1639 aa20.18■□□□□ 0.82
LIG3-213ENST00000590630 ARHGEF11O15085 1522 aa20.17■□□□□ 0.82
LIG3-213ENST00000590630 NUP160Q12769 1436 aa20.17■□□□□ 0.82
LIG3-213ENST00000590630 CEP170Q5SW79 1584 aa20.17■□□□□ 0.82
LIG3-213ENST00000590630 RUSC2Q8N2Y8 1516 aa20.11■□□□□ 0.81
LIG3-213ENST00000590630 CARMIL1Q5VZK9 1371 aa20.1■□□□□ 0.81
LIG3-213ENST00000590630 SHROOM2Q13796 1616 aa20.05■□□□□ 0.8
LIG3-213ENST00000590630 CHIC1Q5VXU3 224 aa20.02■□□□□ 0.8
LIG3-213ENST00000590630 RAPGEF2Q9Y4G8 1499 aa20.01■□□□□ 0.79
LIG3-213ENST00000590630 ARAP1Q96P48 1450 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms