RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 NISCHQ9Y2I1 1504 aa28.22■■■□□ 2.11
ZNF540-209ENST00000590588 ABCC9O60706 1549 aa26.2■■□□□ 1.79
ZNF540-209ENST00000590588 CCDC180Q9P1Z9 1646 aa25.52■■□□□ 1.68
ZNF540-209ENST00000590588 DNAJC5BQ9UF47 199 aa25.2■■□□□ 1.62
ZNF540-209ENST00000590588 RB1CC1Q8TDY2 1594 aa24.66■■□□□ 1.54
ZNF540-209ENST00000590588 PABPN1Q86U42 306 aaKnown RBP eCLIP24.36■■□□□ 1.49
ZNF540-209ENST00000590588 NACADO15069 1562 aa24.35■■□□□ 1.49
ZNF540-209ENST00000590588 DCAF8L2P0C7V8 631 aa24.22■■□□□ 1.47
ZNF540-209ENST00000590588 UNC13AQ9UPW8 1703 aa23.98■■□□□ 1.43
ZNF540-209ENST00000590588 BICRAQ9NZM4 1560 aa23.92■■□□□ 1.42
ZNF540-209ENST00000590588 MYO15BQ96JP2 1530 aa23.82■■□□□ 1.4
ZNF540-209ENST00000590588 CECR2Q9BXF3 1484 aa23.68■■□□□ 1.38
ZNF540-209ENST00000590588 DNAJC5Q9H3Z4 198 aa23.64■■□□□ 1.37
ZNF540-209ENST00000590588 CC2D2AQ9P2K1 1620 aa23.61■■□□□ 1.37
ZNF540-209ENST00000590588 SHROOM4Q9ULL8 1493 aa23.58■■□□□ 1.37
ZNF540-209ENST00000590588 EIF4G1Q04637 1599 aaKnown RBP23.4■■□□□ 1.34
ZNF540-209ENST00000590588 DCAF1Q9Y4B6 1507 aa23.27■■□□□ 1.32
ZNF540-209ENST00000590588 ZCCHC6Q5VYS8 1495 aaKnown RBP23.22■■□□□ 1.31
ZNF540-209ENST00000590588 SCRIBQ14160 1630 aa23.22■■□□□ 1.31
ZNF540-209ENST00000590588 CUX2O14529 1486 aa22.86■■□□□ 1.25
ZNF540-209ENST00000590588 ERCC6Q03468 1493 aa22.7■■□□□ 1.22
ZNF540-209ENST00000590588 NCAPD3P42695 1498 aa22.53■■□□□ 1.2
ZNF540-209ENST00000590588 ATAD2BQ9ULI0 1458 aa22.34■■□□□ 1.17
ZNF540-209ENST00000590588 TRIM41Q8WV44 630 aa22.32■■□□□ 1.16
ZNF540-209ENST00000590588 NESP48681 1621 aa22.31■■□□□ 1.16
ZNF540-209ENST00000590588 HMGXB3Q12766 1538 aa22.23■■□□□ 1.15
ZNF540-209ENST00000590588 SMARCA2P51531 1590 aa22.23■■□□□ 1.15
ZNF540-209ENST00000590588 THOC2Q8NI27 1593 aaKnown RBP22.16■■□□□ 1.14
ZNF540-209ENST00000590588 SMARCA4P51532 1647 aa22.09■■□□□ 1.13
ZNF540-209ENST00000590588 BAZ1BQ9UIG0 1483 aaKnown RBP22.08■■□□□ 1.12
ZNF540-209ENST00000590588 LAMC3Q9Y6N6 1575 aa22.07■■□□□ 1.12
ZNF540-209ENST00000590588 PDS5BQ9NTI5 1447 aa22.03■■□□□ 1.12
ZNF540-209ENST00000590588 BAZ1AQ9NRL2 1556 aaPredicted RBP21.94■■□□□ 1.1
ZNF540-209ENST00000590588 KIF21AQ7Z4S6 1674 aa21.93■■□□□ 1.1
ZNF540-209ENST00000590588 PEG3Q9GZU2 1588 aa21.91■■□□□ 1.1
ZNF540-209ENST00000590588 CADPSQ9ULU8 1353 aa21.83■■□□□ 1.08
ZNF540-209ENST00000590588 OSCARQ8IYS5 282 aa21.81■■□□□ 1.08
ZNF540-209ENST00000590588 MRC2Q9UBG0 1479 aa21.81■■□□□ 1.08
ZNF540-209ENST00000590588 WDR62O43379 1518 aa21.75■■□□□ 1.07
ZNF540-209ENST00000590588 MROH2BQ7Z745 1585 aa21.71■■□□□ 1.07
ZNF540-209ENST00000590588 CEP164Q9UPV0 1460 aa21.61■■□□□ 1.05
ZNF540-209ENST00000590588 FANCD2Q9BXW9 1451 aa21.54■■□□□ 1.04
ZNF540-209ENST00000590588 RIMBP3CA6NJZ7 1639 aa21.44■■□□□ 1.02
ZNF540-209ENST00000590588 RIMBP3BA6NNM3 1639 aa21.44■■□□□ 1.02
ZNF540-209ENST00000590588 RIMBP3Q9UFD9 1639 aa21.44■■□□□ 1.02
ZNF540-209ENST00000590588 CFTRP13569 1480 aa21.41■■□□□ 1.02
ZNF540-209ENST00000590588 WIZO95785 1651 aa21.4■■□□□ 1.02
ZNF540-209ENST00000590588 URB2Q14146 1524 aaKnown RBP21.37■■□□□ 1.01
ZNF540-209ENST00000590588 CYB5RLQ6IPT4 315 aa21.34■■□□□ 1.01
ZNF540-209ENST00000590588 ARHGEF11O15085 1522 aa21.34■■□□□ 1.01
ZNF540-209ENST00000590588 TRHP20396 242 aaPredicted RBP21.31■■□□□ 1
ZNF540-209ENST00000590588 IFT140Q96RY7 1462 aa21.22■□□□□ 0.99
ZNF540-209ENST00000590588 ZNF608Q9ULD9 1512 aaPredicted RBP21.22■□□□□ 0.99
ZNF540-209ENST00000590588 AEBP2Q6ZN18 517 aaPredicted RBP21.17■□□□□ 0.98
ZNF540-209ENST00000590588 TOP2AP11388 1531 aaKnown RBP21.09■□□□□ 0.97
ZNF540-209ENST00000590588 ARAP1Q96P48 1450 aa21.07■□□□□ 0.96
ZNF540-209ENST00000590588 RSF1Q96T23 1441 aaPredicted RBP21.07■□□□□ 0.96
ZNF540-209ENST00000590588 TOPBP1Q92547 1522 aa21.04■□□□□ 0.96
ZNF540-209ENST00000590588 FBLN2P98095 1184 aa21.04■□□□□ 0.96
ZNF540-209ENST00000590588 EIF4G3O43432 1585 aaKnown RBP21.02■□□□□ 0.95
ZNF540-209ENST00000590588 ABCC8Q09428 1581 aa21.02■□□□□ 0.95
ZNF540-209ENST00000590588 PRDM2Q13029 1718 aa21.01■□□□□ 0.95
ZNF540-209ENST00000590588 AQRO60306 1485 aaKnown RBP eCLIP20.99■□□□□ 0.95
ZNF540-209ENST00000590588 CHD1O14646 1710 aa20.95■□□□□ 0.94
ZNF540-209ENST00000590588 CCDC88BA6NC98 1476 aa20.92■□□□□ 0.94
ZNF540-209ENST00000590588 DNMBPQ6XZF7 1577 aa20.89■□□□□ 0.93
ZNF540-209ENST00000590588 TARBP1Q13395 1621 aaKnown RBP20.86■□□□□ 0.93
ZNF540-209ENST00000590588 CHMP7Q8WUX9 453 aaPredicted RBP20.79■□□□□ 0.92
ZNF540-209ENST00000590588 POLA1P09884 1462 aaPredicted RBP20.79■□□□□ 0.92
ZNF540-209ENST00000590588 TDRD9Q8NDG6 1382 aaKnown RBP20.77■□□□□ 0.92
ZNF540-209ENST00000590588 SOGA1O94964 1423 aa20.75■□□□□ 0.91
ZNF540-209ENST00000590588 CLASP1Q7Z460 1538 aa20.74■□□□□ 0.91
ZNF540-209ENST00000590588 RAD54L2Q9Y4B4 1467 aa20.74■□□□□ 0.91
ZNF540-209ENST00000590588 SNAPC4Q5SXM2 1469 aa20.71■□□□□ 0.91
ZNF540-209ENST00000590588 SYNJ1O43426 1573 aa20.71■□□□□ 0.91
ZNF540-209ENST00000590588 MAGI1Q96QZ7 1491 aaPredicted RBP20.65■□□□□ 0.9
ZNF540-209ENST00000590588 WDR97A6NE52 1622 aa20.64■□□□□ 0.89
ZNF540-209ENST00000590588 GAPVD1Q14C86 1478 aa20.62■□□□□ 0.89
ZNF540-209ENST00000590588 SYNJ2O15056 1496 aa20.6■□□□□ 0.89
ZNF540-209ENST00000590588 GRIN2BQ13224 1484 aa20.6■□□□□ 0.89
ZNF540-209ENST00000590588 FGD5Q6ZNL6 1462 aa20.56■□□□□ 0.88
ZNF540-209ENST00000590588 CUX1P39880 1505 aa20.43■□□□□ 0.86
ZNF540-209ENST00000590588 CHIC1Q5VXU3 224 aa20.4■□□□□ 0.86
ZNF540-209ENST00000590588 PBRM1Q86U86 1689 aa20.37■□□□□ 0.85
ZNF540-209ENST00000590588 ERCC6L2Q5T890 1561 aa20.37■□□□□ 0.85
ZNF540-209ENST00000590588 ABCA10Q8WWZ4 1543 aa20.32■□□□□ 0.84
ZNF540-209ENST00000590588 GRIN2AQ12879 1464 aa20.31■□□□□ 0.84
ZNF540-209ENST00000590588 CEP170Q5SW79 1584 aa20.29■□□□□ 0.84
ZNF540-209ENST00000590588 NUP160Q12769 1436 aa20.27■□□□□ 0.84
ZNF540-209ENST00000590588 ABCA5Q8WWZ7 1642 aa20.27■□□□□ 0.84
ZNF540-209ENST00000590588 FAM69CQ0P6D2 419 aa20.26■□□□□ 0.83
ZNF540-209ENST00000590588 ILDR1Q86SU0 546 aaPredicted RBP20.26■□□□□ 0.83
ZNF540-209ENST00000590588 KIF13AQ9H1H9 1805 aa20.25■□□□□ 0.83
ZNF540-209ENST00000590588 KDM4FA0A1W2PPD8 638 aa20.22■□□□□ 0.83
ZNF540-209ENST00000590588 NPM1P06748 294 aaKnown RBP eCLIP20.22■□□□□ 0.83
ZNF540-209ENST00000590588 SHROOM2Q13796 1616 aa20.2■□□□□ 0.82
ZNF540-209ENST00000590588 FHAD1B1AJZ9 1412 aa20.18■□□□□ 0.82
ZNF540-209ENST00000590588 ABCC10Q5T3U5 1492 aa20.18■□□□□ 0.82
ZNF540-209ENST00000590588 JPH4Q96JJ6 628 aa20.17■□□□□ 0.82
ZNF540-209ENST00000590588 PRG4Q92954 1404 aaPredicted RBP20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms