RNA–Protein interactions for RNA: ENST00000589455.5

LINC01140-209, Transcript of long intergenic non-protein coding RNA 1140, humanhuman

TSL 2

Gene LINC01140, Length 538 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01140-209ENST00000589455 NISCHQ9Y2I1 1504 aa39.85■■■■□ 3.97
LINC01140-209ENST00000589455 ABCC9O60706 1549 aa36.26■■■■□ 3.4
LINC01140-209ENST00000589455 CCDC180Q9P1Z9 1646 aa35.84■■■■□ 3.33
LINC01140-209ENST00000589455 DNAJC5BQ9UF47 199 aa34.45■■■■□ 3.11
LINC01140-209ENST00000589455 RB1CC1Q8TDY2 1594 aa34.37■■■■□ 3.09
LINC01140-209ENST00000589455 NACADO15069 1562 aa34.09■■■■□ 3.05
LINC01140-209ENST00000589455 DCAF8L2P0C7V8 631 aa33.82■■■■□ 3
LINC01140-209ENST00000589455 PABPN1Q86U42 306 aaKnown RBP eCLIP33.76■■■□□ 2.99
LINC01140-209ENST00000589455 MYO15BQ96JP2 1530 aa33.57■■■□□ 2.96
LINC01140-209ENST00000589455 UNC13AQ9UPW8 1703 aa33.35■■■□□ 2.93
LINC01140-209ENST00000589455 BICRAQ9NZM4 1560 aa33.34■■■□□ 2.93
LINC01140-209ENST00000589455 SHROOM4Q9ULL8 1493 aa33.02■■■□□ 2.88
LINC01140-209ENST00000589455 DCAF1Q9Y4B6 1507 aa32.96■■■□□ 2.87
LINC01140-209ENST00000589455 ZCCHC6Q5VYS8 1495 aaKnown RBP32.92■■■□□ 2.86
LINC01140-209ENST00000589455 CECR2Q9BXF3 1484 aa32.77■■■□□ 2.84
LINC01140-209ENST00000589455 CC2D2AQ9P2K1 1620 aa32.71■■■□□ 2.83
LINC01140-209ENST00000589455 EIF4G1Q04637 1599 aaKnown RBP32.58■■■□□ 2.81
LINC01140-209ENST00000589455 SCRIBQ14160 1630 aa32.57■■■□□ 2.8
LINC01140-209ENST00000589455 DNAJC5Q9H3Z4 198 aa32.03■■■□□ 2.72
LINC01140-209ENST00000589455 NCAPD3P42695 1498 aa31.54■■■□□ 2.64
LINC01140-209ENST00000589455 CUX2O14529 1486 aa31.52■■■□□ 2.64
LINC01140-209ENST00000589455 ERCC6Q03468 1493 aa31.38■■■□□ 2.61
LINC01140-209ENST00000589455 ATAD2BQ9ULI0 1458 aa31.33■■■□□ 2.61
LINC01140-209ENST00000589455 SMARCA2P51531 1590 aa31.21■■■□□ 2.59
LINC01140-209ENST00000589455 HMGXB3Q12766 1538 aa31.18■■■□□ 2.58
LINC01140-209ENST00000589455 SMARCA4P51532 1647 aa31.09■■■□□ 2.57
LINC01140-209ENST00000589455 NESP48681 1621 aa31.02■■■□□ 2.56
LINC01140-209ENST00000589455 BAZ1BQ9UIG0 1483 aaKnown RBP30.97■■■□□ 2.55
LINC01140-209ENST00000589455 BAZ1AQ9NRL2 1556 aaPredicted RBP30.96■■■□□ 2.55
LINC01140-209ENST00000589455 PEG3Q9GZU2 1588 aa30.88■■■□□ 2.53
LINC01140-209ENST00000589455 LAMC3Q9Y6N6 1575 aa30.79■■■□□ 2.52
LINC01140-209ENST00000589455 THOC2Q8NI27 1593 aaKnown RBP30.75■■■□□ 2.51
LINC01140-209ENST00000589455 PDS5BQ9NTI5 1447 aa30.73■■■□□ 2.51
LINC01140-209ENST00000589455 MROH2BQ7Z745 1585 aa30.65■■■□□ 2.5
LINC01140-209ENST00000589455 CADPSQ9ULU8 1353 aa30.56■■■□□ 2.48
LINC01140-209ENST00000589455 KIF21AQ7Z4S6 1674 aa30.48■■■□□ 2.47
LINC01140-209ENST00000589455 MRC2Q9UBG0 1479 aa30.41■■■□□ 2.46
LINC01140-209ENST00000589455 TRIM41Q8WV44 630 aa30.33■■■□□ 2.45
LINC01140-209ENST00000589455 WDR62O43379 1518 aa30.32■■■□□ 2.44
LINC01140-209ENST00000589455 CEP164Q9UPV0 1460 aa30.19■■■□□ 2.42
LINC01140-209ENST00000589455 WIZO95785 1651 aa30.17■■■□□ 2.42
LINC01140-209ENST00000589455 FANCD2Q9BXW9 1451 aa30.13■■■□□ 2.41
LINC01140-209ENST00000589455 CFTRP13569 1480 aa30.1■■■□□ 2.41
LINC01140-209ENST00000589455 OSCARQ8IYS5 282 aa30.09■■■□□ 2.41
LINC01140-209ENST00000589455 RSF1Q96T23 1441 aaPredicted RBP29.94■■■□□ 2.38
LINC01140-209ENST00000589455 URB2Q14146 1524 aaKnown RBP29.87■■■□□ 2.37
LINC01140-209ENST00000589455 TOP2AP11388 1531 aaKnown RBP29.86■■■□□ 2.37
LINC01140-209ENST00000589455 IFT140Q96RY7 1462 aa29.66■■■□□ 2.34
LINC01140-209ENST00000589455 ZNF608Q9ULD9 1512 aaPredicted RBP29.57■■■□□ 2.32
LINC01140-209ENST00000589455 CCDC88BA6NC98 1476 aa29.56■■■□□ 2.32
LINC01140-209ENST00000589455 RIMBP3CA6NJZ7 1639 aa29.52■■■□□ 2.32
LINC01140-209ENST00000589455 RIMBP3BA6NNM3 1639 aa29.52■■■□□ 2.32
LINC01140-209ENST00000589455 RIMBP3Q9UFD9 1639 aa29.52■■■□□ 2.32
LINC01140-209ENST00000589455 ABCC8Q09428 1581 aa29.52■■■□□ 2.32
LINC01140-209ENST00000589455 TOPBP1Q92547 1522 aa29.5■■■□□ 2.31
LINC01140-209ENST00000589455 PRDM2Q13029 1718 aa29.49■■■□□ 2.31
LINC01140-209ENST00000589455 ARHGEF11O15085 1522 aa29.46■■■□□ 2.31
LINC01140-209ENST00000589455 CYB5RLQ6IPT4 315 aa29.35■■■□□ 2.29
LINC01140-209ENST00000589455 DNMBPQ6XZF7 1577 aa29.34■■■□□ 2.29
LINC01140-209ENST00000589455 EIF4G3O43432 1585 aaKnown RBP29.31■■■□□ 2.28
LINC01140-209ENST00000589455 AQRO60306 1485 aaKnown RBP eCLIP29.29■■■□□ 2.28
LINC01140-209ENST00000589455 TARBP1Q13395 1621 aaKnown RBP29.22■■■□□ 2.27
LINC01140-209ENST00000589455 FBLN2P98095 1184 aa29.2■■■□□ 2.26
LINC01140-209ENST00000589455 POLA1P09884 1462 aaPredicted RBP29.18■■■□□ 2.26
LINC01140-209ENST00000589455 ARAP1Q96P48 1450 aa29.14■■■□□ 2.26
LINC01140-209ENST00000589455 TRHP20396 242 aaPredicted RBP29.13■■■□□ 2.25
LINC01140-209ENST00000589455 SOGA1O94964 1423 aa29.1■■■□□ 2.25
LINC01140-209ENST00000589455 CHD1O14646 1710 aa29.08■■■□□ 2.25
LINC01140-209ENST00000589455 TDRD9Q8NDG6 1382 aaKnown RBP29.07■■■□□ 2.24
LINC01140-209ENST00000589455 RAD54L2Q9Y4B4 1467 aa29.06■■■□□ 2.24
LINC01140-209ENST00000589455 CHMP7Q8WUX9 453 aaPredicted RBP28.98■■■□□ 2.23
LINC01140-209ENST00000589455 WDR97A6NE52 1622 aa28.98■■■□□ 2.23
LINC01140-209ENST00000589455 SNAPC4Q5SXM2 1469 aa28.94■■■□□ 2.22
LINC01140-209ENST00000589455 FGD5Q6ZNL6 1462 aa28.91■■■□□ 2.22
LINC01140-209ENST00000589455 MAGI1Q96QZ7 1491 aaPredicted RBP28.91■■■□□ 2.22
LINC01140-209ENST00000589455 CLASP1Q7Z460 1538 aa28.89■■■□□ 2.22
LINC01140-209ENST00000589455 GRIN2BQ13224 1484 aa28.88■■■□□ 2.21
LINC01140-209ENST00000589455 SYNJ1O43426 1573 aa28.86■■■□□ 2.21
LINC01140-209ENST00000589455 SYNJ2O15056 1496 aa28.83■■■□□ 2.21
LINC01140-209ENST00000589455 CUX1P39880 1505 aa28.81■■■□□ 2.2
LINC01140-209ENST00000589455 GAPVD1Q14C86 1478 aa28.71■■■□□ 2.19
LINC01140-209ENST00000589455 ABCA10Q8WWZ4 1543 aa28.62■■■□□ 2.17
LINC01140-209ENST00000589455 AEBP2Q6ZN18 517 aaPredicted RBP28.6■■■□□ 2.17
LINC01140-209ENST00000589455 PBRM1Q86U86 1689 aa28.51■■■□□ 2.16
LINC01140-209ENST00000589455 ABCA5Q8WWZ7 1642 aa28.51■■■□□ 2.15
LINC01140-209ENST00000589455 GRIN2AQ12879 1464 aa28.47■■■□□ 2.15
LINC01140-209ENST00000589455 WRNQ14191 1432 aaPredicted RBP eCLIP28.47■■■□□ 2.15
LINC01140-209ENST00000589455 NUP160Q12769 1436 aa28.43■■■□□ 2.14
LINC01140-209ENST00000589455 FHAD1B1AJZ9 1412 aa28.36■■■□□ 2.13
LINC01140-209ENST00000589455 ERCC6L2Q5T890 1561 aa28.35■■■□□ 2.13
LINC01140-209ENST00000589455 CEP170Q5SW79 1584 aa28.33■■■□□ 2.13
LINC01140-209ENST00000589455 ADAMTS12P58397 1594 aa28.33■■■□□ 2.12
LINC01140-209ENST00000589455 SUPT5HO00267 1087 aaKnown RBP28.28■■■□□ 2.12
LINC01140-209ENST00000589455 SHROOM2Q13796 1616 aa28.26■■■□□ 2.11
LINC01140-209ENST00000589455 ERICH3Q5RHP9 1530 aa28.25■■■□□ 2.11
LINC01140-209ENST00000589455 TOP2BQ02880 1626 aa28.25■■■□□ 2.11
LINC01140-209ENST00000589455 JPH4Q96JJ6 628 aa28.2■■■□□ 2.1
LINC01140-209ENST00000589455 BIVM-ERCC5R4GMW8 1640 aa28.2■■■□□ 2.1
LINC01140-209ENST00000589455 PRG4Q92954 1404 aaPredicted RBP28.18■■■□□ 2.1
LINC01140-209ENST00000589455 NPM1P06748 294 aaKnown RBP eCLIP28.07■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms