RNA–Protein interactions for RNA: ENST00000589216.1

PTPN2-208, Transcript of protein tyrosine phosphatase, non-receptor type 2, humanhuman

TSL 3

Gene PTPN2, Length 646 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN2-208ENST00000589216 NISCHQ9Y2I1 1504 aa24.42■■□□□ 1.5
PTPN2-208ENST00000589216 CCDC180Q9P1Z9 1646 aa21.81■■□□□ 1.08
PTPN2-208ENST00000589216 ABCC9O60706 1549 aa21.38■■□□□ 1.01
PTPN2-208ENST00000589216 RB1CC1Q8TDY2 1594 aa20.51■□□□□ 0.87
PTPN2-208ENST00000589216 NACADO15069 1562 aa20.44■□□□□ 0.86
PTPN2-208ENST00000589216 ZCCHC6Q5VYS8 1495 aaKnown RBP20.37■□□□□ 0.85
PTPN2-208ENST00000589216 MYO15BQ96JP2 1530 aa20.28■□□□□ 0.84
PTPN2-208ENST00000589216 DCAF8L2P0C7V8 631 aa20.27■□□□□ 0.84
PTPN2-208ENST00000589216 UNC13AQ9UPW8 1703 aa20.2■□□□□ 0.82
PTPN2-208ENST00000589216 DCAF1Q9Y4B6 1507 aa20.18■□□□□ 0.82
PTPN2-208ENST00000589216 BICRAQ9NZM4 1560 aa19.98■□□□□ 0.79
PTPN2-208ENST00000589216 SCRIBQ14160 1630 aa19.92■□□□□ 0.78
PTPN2-208ENST00000589216 PABPN1Q86U42 306 aaKnown RBP eCLIP19.89■□□□□ 0.77
PTPN2-208ENST00000589216 DNAJC5BQ9UF47 199 aa19.66■□□□□ 0.74
PTPN2-208ENST00000589216 SHROOM4Q9ULL8 1493 aa19.65■□□□□ 0.74
PTPN2-208ENST00000589216 AEBP2Q6ZN18 517 aaPredicted RBP19.43■□□□□ 0.7
PTPN2-208ENST00000589216 EIF4G1Q04637 1599 aaKnown RBP19.41■□□□□ 0.7
PTPN2-208ENST00000589216 CC2D2AQ9P2K1 1620 aa19.36■□□□□ 0.69
PTPN2-208ENST00000589216 CECR2Q9BXF3 1484 aa19.19■□□□□ 0.66
PTPN2-208ENST00000589216 SMARCA4P51532 1647 aa19.03■□□□□ 0.64
PTPN2-208ENST00000589216 BAZ1AQ9NRL2 1556 aaPredicted RBP18.93■□□□□ 0.62
PTPN2-208ENST00000589216 ATAD2BQ9ULI0 1458 aa18.87■□□□□ 0.61
PTPN2-208ENST00000589216 MROH2BQ7Z745 1585 aa18.86■□□□□ 0.61
PTPN2-208ENST00000589216 SMARCA2P51531 1590 aa18.84■□□□□ 0.61
PTPN2-208ENST00000589216 NCAPD3P42695 1498 aa18.84■□□□□ 0.61
PTPN2-208ENST00000589216 PEG3Q9GZU2 1588 aa18.81■□□□□ 0.6
PTPN2-208ENST00000589216 HMGXB3Q12766 1538 aa18.81■□□□□ 0.6
PTPN2-208ENST00000589216 BAZ1BQ9UIG0 1483 aaKnown RBP18.71■□□□□ 0.59
PTPN2-208ENST00000589216 WIZO95785 1651 aa18.69■□□□□ 0.58
PTPN2-208ENST00000589216 RSF1Q96T23 1441 aaPredicted RBP18.56■□□□□ 0.56
PTPN2-208ENST00000589216 NESP48681 1621 aa18.52■□□□□ 0.55
PTPN2-208ENST00000589216 TOP2AP11388 1531 aaKnown RBP18.44■□□□□ 0.54
PTPN2-208ENST00000589216 LAMC3Q9Y6N6 1575 aa18.4■□□□□ 0.54
PTPN2-208ENST00000589216 ERCC6Q03468 1493 aa18.38■□□□□ 0.53
PTPN2-208ENST00000589216 KIF21AQ7Z4S6 1674 aa18.35■□□□□ 0.53
PTPN2-208ENST00000589216 THOC2Q8NI27 1593 aaKnown RBP18.3■□□□□ 0.52
PTPN2-208ENST00000589216 CADPSQ9ULU8 1353 aa18.26■□□□□ 0.51
PTPN2-208ENST00000589216 CUX2O14529 1486 aa18.22■□□□□ 0.51
PTPN2-208ENST00000589216 CHIC1Q5VXU3 224 aa18.2■□□□□ 0.5
PTPN2-208ENST00000589216 PDS5BQ9NTI5 1447 aa18.19■□□□□ 0.5
PTPN2-208ENST00000589216 CCDC88BA6NC98 1476 aa18.19■□□□□ 0.5
PTPN2-208ENST00000589216 CFTRP13569 1480 aa18.19■□□□□ 0.5
PTPN2-208ENST00000589216 PRDM2Q13029 1718 aa18.17■□□□□ 0.5
PTPN2-208ENST00000589216 FANCD2Q9BXW9 1451 aa18.11■□□□□ 0.49
PTPN2-208ENST00000589216 MRC2Q9UBG0 1479 aa18.09■□□□□ 0.49
PTPN2-208ENST00000589216 CEP164Q9UPV0 1460 aa18.09■□□□□ 0.49
PTPN2-208ENST00000589216 WDR62O43379 1518 aa18.08■□□□□ 0.49
PTPN2-208ENST00000589216 URB2Q14146 1524 aaKnown RBP17.98■□□□□ 0.47
PTPN2-208ENST00000589216 SUPT5HO00267 1087 aaKnown RBP17.94■□□□□ 0.46
PTPN2-208ENST00000589216 TOPBP1Q92547 1522 aa17.83■□□□□ 0.45
PTPN2-208ENST00000589216 DNMBPQ6XZF7 1577 aa17.83■□□□□ 0.44
PTPN2-208ENST00000589216 ABCC8Q09428 1581 aa17.71■□□□□ 0.43
PTPN2-208ENST00000589216 CUX1P39880 1505 aa17.71■□□□□ 0.43
PTPN2-208ENST00000589216 TARBP1Q13395 1621 aaKnown RBP17.7■□□□□ 0.42
PTPN2-208ENST00000589216 ZNF608Q9ULD9 1512 aaPredicted RBP17.7■□□□□ 0.42
PTPN2-208ENST00000589216 IFT140Q96RY7 1462 aa17.69■□□□□ 0.42
PTPN2-208ENST00000589216 POLA1P09884 1462 aaPredicted RBP17.69■□□□□ 0.42
PTPN2-208ENST00000589216 DNAJC5Q9H3Z4 198 aa17.68■□□□□ 0.42
PTPN2-208ENST00000589216 EIF4G3O43432 1585 aaKnown RBP17.67■□□□□ 0.42
PTPN2-208ENST00000589216 FGD5Q6ZNL6 1462 aa17.63■□□□□ 0.41
PTPN2-208ENST00000589216 RAD54L2Q9Y4B4 1467 aa17.61■□□□□ 0.41
PTPN2-208ENST00000589216 WDR97A6NE52 1622 aa17.6■□□□□ 0.41
PTPN2-208ENST00000589216 SYNJ1O43426 1573 aa17.56■□□□□ 0.4
PTPN2-208ENST00000589216 BIVM-ERCC5R4GMW8 1640 aa17.54■□□□□ 0.4
PTPN2-208ENST00000589216 AQRO60306 1485 aaKnown RBP eCLIP17.53■□□□□ 0.44e-6■■■■■ 31
PTPN2-208ENST00000589216 TOP2BQ02880 1626 aa17.52■□□□□ 0.4
PTPN2-208ENST00000589216 SOGA1O94964 1423 aa17.52■□□□□ 0.4
PTPN2-208ENST00000589216 CHD1O14646 1710 aa17.49■□□□□ 0.39
PTPN2-208ENST00000589216 WRNQ14191 1432 aaPredicted RBP eCLIP17.48■□□□□ 0.39
PTPN2-208ENST00000589216 TDRD9Q8NDG6 1382 aaKnown RBP17.47■□□□□ 0.39
PTPN2-208ENST00000589216 PBRM1Q86U86 1689 aa17.45■□□□□ 0.38
PTPN2-208ENST00000589216 ABCA5Q8WWZ7 1642 aa17.45■□□□□ 0.38
PTPN2-208ENST00000589216 ABCA10Q8WWZ4 1543 aa17.43■□□□□ 0.38
PTPN2-208ENST00000589216 SNAPC4Q5SXM2 1469 aa17.41■□□□□ 0.38
PTPN2-208ENST00000589216 GRIN2BQ13224 1484 aa17.36■□□□□ 0.37
PTPN2-208ENST00000589216 GAPVD1Q14C86 1478 aa17.36■□□□□ 0.37
PTPN2-208ENST00000589216 MAGI1Q96QZ7 1491 aaPredicted RBP17.34■□□□□ 0.37
PTPN2-208ENST00000589216 OSCARQ8IYS5 282 aa17.32■□□□□ 0.36
PTPN2-208ENST00000589216 ADAMTS12P58397 1594 aa17.29■□□□□ 0.36
PTPN2-208ENST00000589216 SYNJ2O15056 1496 aa17.27■□□□□ 0.36
PTPN2-208ENST00000589216 RIMBP3CA6NJZ7 1639 aa17.27■□□□□ 0.36
PTPN2-208ENST00000589216 RIMBP3BA6NNM3 1639 aa17.27■□□□□ 0.36
PTPN2-208ENST00000589216 RIMBP3Q9UFD9 1639 aa17.27■□□□□ 0.36
PTPN2-208ENST00000589216 CLASP1Q7Z460 1538 aa17.26■□□□□ 0.35
PTPN2-208ENST00000589216 FBLN2P98095 1184 aa17.24■□□□□ 0.35
PTPN2-208ENST00000589216 ARHGEF11O15085 1522 aa17.23■□□□□ 0.35
PTPN2-208ENST00000589216 ERICH3Q5RHP9 1530 aa17.21■□□□□ 0.34
PTPN2-208ENST00000589216 GRIN2AQ12879 1464 aa17.18■□□□□ 0.34
PTPN2-208ENST00000589216 CEP170Q5SW79 1584 aa17.16■□□□□ 0.34
PTPN2-208ENST00000589216 CHMP7Q8WUX9 453 aaPredicted RBP17.15■□□□□ 0.34
PTPN2-208ENST00000589216 FHAD1B1AJZ9 1412 aa17.13■□□□□ 0.33
PTPN2-208ENST00000589216 ARAP1Q96P48 1450 aa17.1■□□□□ 0.33
PTPN2-208ENST00000589216 TRIM41Q8WV44 630 aa17.09■□□□□ 0.33
PTPN2-208ENST00000589216 NUP160Q12769 1436 aa17.09■□□□□ 0.33
PTPN2-208ENST00000589216 CUL7Q14999 1698 aa17.08■□□□□ 0.32
PTPN2-208ENST00000589216 KIF27Q86VH2 1401 aa17.08■□□□□ 0.32
PTPN2-208ENST00000589216 SHROOM2Q13796 1616 aa17.05■□□□□ 0.32
PTPN2-208ENST00000589216 ERCC6L2Q5T890 1561 aa17.05■□□□□ 0.32
PTPN2-208ENST00000589216 RUSC2Q8N2Y8 1516 aa17.05■□□□□ 0.32
PTPN2-208ENST00000589216 IGF1RP08069 1367 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms