RNA–Protein interactions for RNA: ENST00000587721.1

RDH13-209, Transcript of retinol dehydrogenase 13, humanhuman

TSL 4

Gene RDH13, Length 731 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RDH13-209ENST00000587721 NISCHQ9Y2I1 1504 aa34.25■■■■□ 3.07
RDH13-209ENST00000587721 ABCC9O60706 1549 aa30.77■■■□□ 2.52
RDH13-209ENST00000587721 CCDC180Q9P1Z9 1646 aa30.72■■■□□ 2.51
RDH13-209ENST00000587721 RB1CC1Q8TDY2 1594 aa29.3■■■□□ 2.28
RDH13-209ENST00000587721 NACADO15069 1562 aa29.1■■■□□ 2.25
RDH13-209ENST00000587721 DCAF8L2P0C7V8 631 aa29.05■■■□□ 2.24
RDH13-209ENST00000587721 DNAJC5BQ9UF47 199 aa28.83■■■□□ 2.21
RDH13-209ENST00000587721 MYO15BQ96JP2 1530 aa28.7■■■□□ 2.19
RDH13-209ENST00000587721 PABPN1Q86U42 306 aaKnown RBP eCLIP28.67■■■□□ 2.18
RDH13-209ENST00000587721 UNC13AQ9UPW8 1703 aa28.47■■■□□ 2.15
RDH13-209ENST00000587721 ZCCHC6Q5VYS8 1495 aaKnown RBP28.36■■■□□ 2.13
RDH13-209ENST00000587721 BICRAQ9NZM4 1560 aa28.34■■■□□ 2.13
RDH13-209ENST00000587721 DCAF1Q9Y4B6 1507 aa28.31■■■□□ 2.12
RDH13-209ENST00000587721 SHROOM4Q9ULL8 1493 aa28.1■■■□□ 2.09
RDH13-209ENST00000587721 SCRIBQ14160 1630 aa27.98■■■□□ 2.07
RDH13-209ENST00000587721 CC2D2AQ9P2K1 1620 aa27.76■■■□□ 2.03
RDH13-209ENST00000587721 CECR2Q9BXF3 1484 aa27.75■■■□□ 2.03
RDH13-209ENST00000587721 EIF4G1Q04637 1599 aaKnown RBP27.72■■■□□ 2.03
RDH13-209ENST00000587721 NCAPD3P42695 1498 aa26.87■■□□□ 1.89
RDH13-209ENST00000587721 ATAD2BQ9ULI0 1458 aa26.76■■□□□ 1.87
RDH13-209ENST00000587721 SMARCA2P51531 1590 aa26.72■■□□□ 1.87
RDH13-209ENST00000587721 SMARCA4P51532 1647 aa26.69■■□□□ 1.86
RDH13-209ENST00000587721 HMGXB3Q12766 1538 aa26.65■■□□□ 1.86
RDH13-209ENST00000587721 ERCC6Q03468 1493 aa26.64■■□□□ 1.86
RDH13-209ENST00000587721 BAZ1AQ9NRL2 1556 aaPredicted RBP26.63■■□□□ 1.85
RDH13-209ENST00000587721 DNAJC5Q9H3Z4 198 aa26.6■■□□□ 1.85
RDH13-209ENST00000587721 CUX2O14529 1486 aa26.57■■□□□ 1.84
RDH13-209ENST00000587721 BAZ1BQ9UIG0 1483 aaKnown RBP26.54■■□□□ 1.84
RDH13-209ENST00000587721 PEG3Q9GZU2 1588 aa26.45■■□□□ 1.82
RDH13-209ENST00000587721 NESP48681 1621 aa26.38■■□□□ 1.81
RDH13-209ENST00000587721 MROH2BQ7Z745 1585 aa26.35■■□□□ 1.81
RDH13-209ENST00000587721 LAMC3Q9Y6N6 1575 aa26.25■■□□□ 1.79
RDH13-209ENST00000587721 PDS5BQ9NTI5 1447 aa26.17■■□□□ 1.78
RDH13-209ENST00000587721 THOC2Q8NI27 1593 aaKnown RBP26.09■■□□□ 1.77
RDH13-209ENST00000587721 CADPSQ9ULU8 1353 aa26.07■■□□□ 1.76
RDH13-209ENST00000587721 WIZO95785 1651 aa26.01■■□□□ 1.75
RDH13-209ENST00000587721 KIF21AQ7Z4S6 1674 aa26■■□□□ 1.75
RDH13-209ENST00000587721 MRC2Q9UBG0 1479 aa25.9■■□□□ 1.74
RDH13-209ENST00000587721 RSF1Q96T23 1441 aaPredicted RBP25.84■■□□□ 1.73
RDH13-209ENST00000587721 CEP164Q9UPV0 1460 aa25.8■■□□□ 1.72
RDH13-209ENST00000587721 WDR62O43379 1518 aa25.79■■□□□ 1.72
RDH13-209ENST00000587721 FANCD2Q9BXW9 1451 aa25.75■■□□□ 1.71
RDH13-209ENST00000587721 TOP2AP11388 1531 aaKnown RBP25.74■■□□□ 1.71
RDH13-209ENST00000587721 CFTRP13569 1480 aa25.74■■□□□ 1.71
RDH13-209ENST00000587721 URB2Q14146 1524 aaKnown RBP25.48■■□□□ 1.67
RDH13-209ENST00000587721 CCDC88BA6NC98 1476 aa25.45■■□□□ 1.66
RDH13-209ENST00000587721 TRIM41Q8WV44 630 aa25.44■■□□□ 1.66
RDH13-209ENST00000587721 OSCARQ8IYS5 282 aa25.43■■□□□ 1.66
RDH13-209ENST00000587721 PRDM2Q13029 1718 aa25.38■■□□□ 1.65
RDH13-209ENST00000587721 IFT140Q96RY7 1462 aa25.29■■□□□ 1.64
RDH13-209ENST00000587721 ABCC8Q09428 1581 aa25.28■■□□□ 1.64
RDH13-209ENST00000587721 TOPBP1Q92547 1522 aa25.23■■□□□ 1.63
RDH13-209ENST00000587721 ZNF608Q9ULD9 1512 aaPredicted RBP25.17■■□□□ 1.62
RDH13-209ENST00000587721 DNMBPQ6XZF7 1577 aa25.14■■□□□ 1.62
RDH13-209ENST00000587721 EIF4G3O43432 1585 aaKnown RBP25.03■■□□□ 1.6
RDH13-209ENST00000587721 AQRO60306 1485 aaKnown RBP eCLIP24.98■■□□□ 1.597e-7■■■□□ 18.2
RDH13-209ENST00000587721 POLA1P09884 1462 aaPredicted RBP24.98■■□□□ 1.59
RDH13-209ENST00000587721 TARBP1Q13395 1621 aaKnown RBP24.97■■□□□ 1.59
RDH13-209ENST00000587721 RIMBP3CA6NJZ7 1639 aa24.94■■□□□ 1.58
RDH13-209ENST00000587721 RIMBP3BA6NNM3 1639 aa24.94■■□□□ 1.58
RDH13-209ENST00000587721 RIMBP3Q9UFD9 1639 aa24.94■■□□□ 1.58
RDH13-209ENST00000587721 FBLN2P98095 1184 aa24.92■■□□□ 1.58
RDH13-209ENST00000587721 SOGA1O94964 1423 aa24.92■■□□□ 1.58
RDH13-209ENST00000587721 ARHGEF11O15085 1522 aa24.91■■□□□ 1.58
RDH13-209ENST00000587721 RAD54L2Q9Y4B4 1467 aa24.88■■□□□ 1.57
RDH13-209ENST00000587721 TDRD9Q8NDG6 1382 aaKnown RBP24.85■■□□□ 1.57
RDH13-209ENST00000587721 FGD5Q6ZNL6 1462 aa24.83■■□□□ 1.56
RDH13-209ENST00000587721 CHD1O14646 1710 aa24.81■■□□□ 1.56
RDH13-209ENST00000587721 CYB5RLQ6IPT4 315 aa24.81■■□□□ 1.56
RDH13-209ENST00000587721 WDR97A6NE52 1622 aa24.79■■□□□ 1.56
RDH13-209ENST00000587721 SUPT5HO00267 1087 aaKnown RBP24.76■■□□□ 1.55
RDH13-209ENST00000587721 CUX1P39880 1505 aa24.76■■□□□ 1.55
RDH13-209ENST00000587721 CHMP7Q8WUX9 453 aaPredicted RBP24.75■■□□□ 1.55
RDH13-209ENST00000587721 SNAPC4Q5SXM2 1469 aa24.72■■□□□ 1.55
RDH13-209ENST00000587721 GRIN2BQ13224 1484 aa24.7■■□□□ 1.55
RDH13-209ENST00000587721 MAGI1Q96QZ7 1491 aaPredicted RBP24.7■■□□□ 1.54
RDH13-209ENST00000587721 ARAP1Q96P48 1450 aa24.64■■□□□ 1.53
RDH13-209ENST00000587721 SYNJ1O43426 1573 aa24.63■■□□□ 1.53
RDH13-209ENST00000587721 SYNJ2O15056 1496 aa24.62■■□□□ 1.53
RDH13-209ENST00000587721 GAPVD1Q14C86 1478 aa24.6■■□□□ 1.53
RDH13-209ENST00000587721 TRHP20396 242 aaPredicted RBP24.58■■□□□ 1.53
RDH13-209ENST00000587721 CLASP1Q7Z460 1538 aa24.56■■□□□ 1.52
RDH13-209ENST00000587721 ABCA10Q8WWZ4 1543 aa24.56■■□□□ 1.52
RDH13-209ENST00000587721 WRNQ14191 1432 aaPredicted RBP eCLIP24.51■■□□□ 1.51
RDH13-209ENST00000587721 PBRM1Q86U86 1689 aa24.5■■□□□ 1.51
RDH13-209ENST00000587721 ABCA5Q8WWZ7 1642 aa24.46■■□□□ 1.51
RDH13-209ENST00000587721 TOP2BQ02880 1626 aa24.38■■□□□ 1.49
RDH13-209ENST00000587721 GRIN2AQ12879 1464 aa24.36■■□□□ 1.49
RDH13-209ENST00000587721 BIVM-ERCC5R4GMW8 1640 aa24.35■■□□□ 1.49
RDH13-209ENST00000587721 FHAD1B1AJZ9 1412 aa24.31■■□□□ 1.48
RDH13-209ENST00000587721 ADAMTS12P58397 1594 aa24.29■■□□□ 1.48
RDH13-209ENST00000587721 NUP160Q12769 1436 aa24.27■■□□□ 1.48
RDH13-209ENST00000587721 ERICH3Q5RHP9 1530 aa24.25■■□□□ 1.47
RDH13-209ENST00000587721 CEP170Q5SW79 1584 aa24.2■■□□□ 1.47
RDH13-209ENST00000587721 ERCC6L2Q5T890 1561 aa24.14■■□□□ 1.45
RDH13-209ENST00000587721 SHROOM2Q13796 1616 aa24.11■■□□□ 1.45
RDH13-209ENST00000587721 JPH4Q96JJ6 628 aa24.09■■□□□ 1.45
RDH13-209ENST00000587721 PRG4Q92954 1404 aaPredicted RBP24.07■■□□□ 1.44
RDH13-209ENST00000587721 KIF27Q86VH2 1401 aa24.01■■□□□ 1.43
RDH13-209ENST00000587721 NPM1P06748 294 aaKnown RBP eCLIP23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 110.2 ms