RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 NISCHQ9Y2I1 1504 aa23.87■■□□□ 1.41
LIG3-203ENST00000585370 ABCC9O60706 1549 aa21.45■■□□□ 1.02
LIG3-203ENST00000585370 CCDC180Q9P1Z9 1646 aa21.35■■□□□ 1.01
LIG3-203ENST00000585370 RB1CC1Q8TDY2 1594 aa20.36■□□□□ 0.85
LIG3-203ENST00000585370 DNAJC5BQ9UF47 199 aa20.24■□□□□ 0.83
LIG3-203ENST00000585370 NACADO15069 1562 aa20.24■□□□□ 0.83
LIG3-203ENST00000585370 DCAF8L2P0C7V8 631 aa20.22■□□□□ 0.83
LIG3-203ENST00000585370 PABPN1Q86U42 306 aaKnown RBP eCLIP20.03■□□□□ 0.8
LIG3-203ENST00000585370 MYO15BQ96JP2 1530 aa19.96■□□□□ 0.79
LIG3-203ENST00000585370 UNC13AQ9UPW8 1703 aa19.9■□□□□ 0.78
LIG3-203ENST00000585370 BICRAQ9NZM4 1560 aa19.82■□□□□ 0.76
LIG3-203ENST00000585370 ZCCHC6Q5VYS8 1495 aaKnown RBP19.77■□□□□ 0.76
LIG3-203ENST00000585370 DCAF1Q9Y4B6 1507 aa19.69■□□□□ 0.74
LIG3-203ENST00000585370 SCRIBQ14160 1630 aa19.5■□□□□ 0.71
LIG3-203ENST00000585370 SHROOM4Q9ULL8 1493 aa19.48■□□□□ 0.71
LIG3-203ENST00000585370 CC2D2AQ9P2K1 1620 aa19.36■□□□□ 0.69
LIG3-203ENST00000585370 CECR2Q9BXF3 1484 aa19.33■□□□□ 0.68
LIG3-203ENST00000585370 EIF4G1Q04637 1599 aaKnown RBP19.32■□□□□ 0.68
LIG3-203ENST00000585370 NCAPD3P42695 1498 aa18.72■□□□□ 0.59
LIG3-203ENST00000585370 ATAD2BQ9ULI0 1458 aa18.66■□□□□ 0.58
LIG3-203ENST00000585370 SMARCA4P51532 1647 aa18.6■□□□□ 0.57
LIG3-203ENST00000585370 SMARCA2P51531 1590 aa18.56■□□□□ 0.56
LIG3-203ENST00000585370 DNAJC5Q9H3Z4 198 aa18.56■□□□□ 0.56
LIG3-203ENST00000585370 HMGXB3Q12766 1538 aa18.53■□□□□ 0.56
LIG3-203ENST00000585370 ERCC6Q03468 1493 aa18.5■□□□□ 0.55
LIG3-203ENST00000585370 BAZ1AQ9NRL2 1556 aaPredicted RBP18.5■□□□□ 0.55
LIG3-203ENST00000585370 CUX2O14529 1486 aa18.46■□□□□ 0.55
LIG3-203ENST00000585370 BAZ1BQ9UIG0 1483 aaKnown RBP18.45■□□□□ 0.54
LIG3-203ENST00000585370 NESP48681 1621 aa18.44■□□□□ 0.54
LIG3-203ENST00000585370 PEG3Q9GZU2 1588 aa18.42■□□□□ 0.54
LIG3-203ENST00000585370 MROH2BQ7Z745 1585 aa18.41■□□□□ 0.54
LIG3-203ENST00000585370 SUPT5HO00267 1087 aaKnown RBP18.25■□□□□ 0.51
LIG3-203ENST00000585370 LAMC3Q9Y6N6 1575 aa18.25■□□□□ 0.51
LIG3-203ENST00000585370 THOC2Q8NI27 1593 aaKnown RBP18.2■□□□□ 0.5
LIG3-203ENST00000585370 PDS5BQ9NTI5 1447 aa18.18■□□□□ 0.5
LIG3-203ENST00000585370 WIZO95785 1651 aa18.16■□□□□ 0.5
LIG3-203ENST00000585370 CADPSQ9ULU8 1353 aa18.16■□□□□ 0.5
LIG3-203ENST00000585370 KIF21AQ7Z4S6 1674 aa18.15■□□□□ 0.5
LIG3-203ENST00000585370 RSF1Q96T23 1441 aaPredicted RBP18.04■□□□□ 0.48
LIG3-203ENST00000585370 MRC2Q9UBG0 1479 aa18.01■□□□□ 0.47
LIG3-203ENST00000585370 WDR62O43379 1518 aa17.97■□□□□ 0.47
LIG3-203ENST00000585370 CFTRP13569 1480 aa17.94■□□□□ 0.46
LIG3-203ENST00000585370 FANCD2Q9BXW9 1451 aa17.93■□□□□ 0.46
LIG3-203ENST00000585370 CEP164Q9UPV0 1460 aa17.93■□□□□ 0.46
LIG3-203ENST00000585370 TOP2AP11388 1531 aaKnown RBP17.92■□□□□ 0.46
LIG3-203ENST00000585370 URB2Q14146 1524 aaKnown RBP17.79■□□□□ 0.44
LIG3-203ENST00000585370 CCDC88BA6NC98 1476 aa17.76■□□□□ 0.43
LIG3-203ENST00000585370 TRIM41Q8WV44 630 aa17.72■□□□□ 0.43
LIG3-203ENST00000585370 OSCARQ8IYS5 282 aa17.69■□□□□ 0.42
LIG3-203ENST00000585370 PRDM2Q13029 1718 aa17.66■□□□□ 0.42
LIG3-203ENST00000585370 TOPBP1Q92547 1522 aa17.59■□□□□ 0.41
LIG3-203ENST00000585370 ZNF608Q9ULD9 1512 aaPredicted RBP17.59■□□□□ 0.41
LIG3-203ENST00000585370 IFT140Q96RY7 1462 aa17.58■□□□□ 0.41
LIG3-203ENST00000585370 CHIC1Q5VXU3 224 aa17.55■□□□□ 0.4
LIG3-203ENST00000585370 ABCC8Q09428 1581 aa17.53■□□□□ 0.4
LIG3-203ENST00000585370 DNMBPQ6XZF7 1577 aa17.49■□□□□ 0.39
LIG3-203ENST00000585370 AQRO60306 1485 aaKnown RBP eCLIP17.44■□□□□ 0.382e-8■■■■■ 32.2
LIG3-203ENST00000585370 EIF4G3O43432 1585 aaKnown RBP17.43■□□□□ 0.38
LIG3-203ENST00000585370 TARBP1Q13395 1621 aaKnown RBP17.42■□□□□ 0.38
LIG3-203ENST00000585370 POLA1P09884 1462 aaPredicted RBP17.41■□□□□ 0.38
LIG3-203ENST00000585370 RIMBP3CA6NJZ7 1639 aa17.39■□□□□ 0.38
LIG3-203ENST00000585370 RIMBP3BA6NNM3 1639 aa17.39■□□□□ 0.38
LIG3-203ENST00000585370 RIMBP3Q9UFD9 1639 aa17.39■□□□□ 0.38
LIG3-203ENST00000585370 RAD54L2Q9Y4B4 1467 aa17.37■□□□□ 0.37
LIG3-203ENST00000585370 SOGA1O94964 1423 aa17.35■□□□□ 0.37
LIG3-203ENST00000585370 ARHGEF11O15085 1522 aa17.35■□□□□ 0.37
LIG3-203ENST00000585370 TDRD9Q8NDG6 1382 aaKnown RBP17.33■□□□□ 0.36
LIG3-203ENST00000585370 FBLN2P98095 1184 aa17.33■□□□□ 0.36
LIG3-203ENST00000585370 CHD1O14646 1710 aa17.3■□□□□ 0.36
LIG3-203ENST00000585370 CYB5RLQ6IPT4 315 aa17.29■□□□□ 0.36
LIG3-203ENST00000585370 FGD5Q6ZNL6 1462 aa17.29■□□□□ 0.36
LIG3-203ENST00000585370 CUX1P39880 1505 aa17.28■□□□□ 0.36
LIG3-203ENST00000585370 SNAPC4Q5SXM2 1469 aa17.22■□□□□ 0.35
LIG3-203ENST00000585370 CHMP7Q8WUX9 453 aaPredicted RBP17.2■□□□□ 0.34
LIG3-203ENST00000585370 WDR97A6NE52 1622 aa17.2■□□□□ 0.34
LIG3-203ENST00000585370 ARAP1Q96P48 1450 aa17.18■□□□□ 0.34
LIG3-203ENST00000585370 GRIN2BQ13224 1484 aa17.18■□□□□ 0.34
LIG3-203ENST00000585370 MAGI1Q96QZ7 1491 aaPredicted RBP17.17■□□□□ 0.34
LIG3-203ENST00000585370 CLASP1Q7Z460 1538 aa17.13■□□□□ 0.33
LIG3-203ENST00000585370 GAPVD1Q14C86 1478 aa17.12■□□□□ 0.33
LIG3-203ENST00000585370 SYNJ2O15056 1496 aa17.12■□□□□ 0.33
LIG3-203ENST00000585370 ABCA10Q8WWZ4 1543 aa17.1■□□□□ 0.33
LIG3-203ENST00000585370 SYNJ1O43426 1573 aa17.1■□□□□ 0.33
LIG3-203ENST00000585370 TRHP20396 242 aaPredicted RBP17.07■□□□□ 0.32
LIG3-203ENST00000585370 PBRM1Q86U86 1689 aa17.06■□□□□ 0.32
LIG3-203ENST00000585370 ABCA5Q8WWZ7 1642 aa17.05■□□□□ 0.32
LIG3-203ENST00000585370 WRNQ14191 1432 aaPredicted RBP eCLIP17.03■□□□□ 0.32
LIG3-203ENST00000585370 TOP2BQ02880 1626 aa16.97■□□□□ 0.31
LIG3-203ENST00000585370 BIVM-ERCC5R4GMW8 1640 aa16.96■□□□□ 0.31
LIG3-203ENST00000585370 GRIN2AQ12879 1464 aa16.95■□□□□ 0.3
LIG3-203ENST00000585370 ADAMTS12P58397 1594 aa16.91■□□□□ 0.3
LIG3-203ENST00000585370 NUP160Q12769 1436 aa16.91■□□□□ 0.3
LIG3-203ENST00000585370 FHAD1B1AJZ9 1412 aa16.9■□□□□ 0.3
LIG3-203ENST00000585370 ERCC6L2Q5T890 1561 aa16.89■□□□□ 0.3
LIG3-203ENST00000585370 CEP170Q5SW79 1584 aa16.89■□□□□ 0.29
LIG3-203ENST00000585370 EEA1Q15075 1411 aa16.87■□□□□ 0.29
LIG3-203ENST00000585370 ERICH3Q5RHP9 1530 aa16.86■□□□□ 0.29
LIG3-203ENST00000585370 LOC105371045A0A1W2PR82 267 aa16.81■□□□□ 0.28
LIG3-203ENST00000585370 SHROOM2Q13796 1616 aa16.81■□□□□ 0.28
LIG3-203ENST00000585370 FAM9AQ8IZU1 332 aaPredicted RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms