RNA–Protein interactions for RNA: ENST00000584525.5

CDK5RAP3-234, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 4

Gene CDK5RAP3, Length 530 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-234ENST00000584525 NISCHQ9Y2I1 1504 aa32.72■■■□□ 2.83
CDK5RAP3-234ENST00000584525 ABCC9O60706 1549 aa29.71■■■□□ 2.35
CDK5RAP3-234ENST00000584525 CCDC180Q9P1Z9 1646 aa29.31■■■□□ 2.28
CDK5RAP3-234ENST00000584525 DNAJC5BQ9UF47 199 aa28.11■■■□□ 2.09
CDK5RAP3-234ENST00000584525 RB1CC1Q8TDY2 1594 aa28.11■■■□□ 2.09
CDK5RAP3-234ENST00000584525 DCAF8L2P0C7V8 631 aa27.93■■■□□ 2.06
CDK5RAP3-234ENST00000584525 NACADO15069 1562 aa27.86■■■□□ 2.05
CDK5RAP3-234ENST00000584525 PABPN1Q86U42 306 aaKnown RBP eCLIP27.73■■■□□ 2.03
CDK5RAP3-234ENST00000584525 MYO15BQ96JP2 1530 aa27.39■■□□□ 1.98
CDK5RAP3-234ENST00000584525 UNC13AQ9UPW8 1703 aa27.27■■□□□ 1.96
CDK5RAP3-234ENST00000584525 BICRAQ9NZM4 1560 aa27.26■■□□□ 1.95
CDK5RAP3-234ENST00000584525 ZCCHC6Q5VYS8 1495 aaKnown RBP27.05■■□□□ 1.92
CDK5RAP3-234ENST00000584525 DCAF1Q9Y4B6 1507 aa26.96■■□□□ 1.91
CDK5RAP3-234ENST00000584525 SHROOM4Q9ULL8 1493 aa26.88■■□□□ 1.89
CDK5RAP3-234ENST00000584525 SCRIBQ14160 1630 aa26.81■■□□□ 1.88
CDK5RAP3-234ENST00000584525 CECR2Q9BXF3 1484 aa26.79■■□□□ 1.88
CDK5RAP3-234ENST00000584525 CC2D2AQ9P2K1 1620 aa26.74■■□□□ 1.87
CDK5RAP3-234ENST00000584525 EIF4G1Q04637 1599 aaKnown RBP26.64■■□□□ 1.86
CDK5RAP3-234ENST00000584525 DNAJC5Q9H3Z4 198 aa25.98■■□□□ 1.75
CDK5RAP3-234ENST00000584525 NCAPD3P42695 1498 aa25.78■■□□□ 1.72
CDK5RAP3-234ENST00000584525 ERCC6Q03468 1493 aa25.7■■□□□ 1.7
CDK5RAP3-234ENST00000584525 ATAD2BQ9ULI0 1458 aa25.67■■□□□ 1.7
CDK5RAP3-234ENST00000584525 CUX2O14529 1486 aa25.65■■□□□ 1.7
CDK5RAP3-234ENST00000584525 SMARCA2P51531 1590 aa25.55■■□□□ 1.68
CDK5RAP3-234ENST00000584525 SMARCA4P51532 1647 aa25.51■■□□□ 1.67
CDK5RAP3-234ENST00000584525 HMGXB3Q12766 1538 aa25.49■■□□□ 1.67
CDK5RAP3-234ENST00000584525 NESP48681 1621 aa25.45■■□□□ 1.66
CDK5RAP3-234ENST00000584525 BAZ1BQ9UIG0 1483 aaKnown RBP25.41■■□□□ 1.66
CDK5RAP3-234ENST00000584525 BAZ1AQ9NRL2 1556 aaPredicted RBP25.39■■□□□ 1.66
CDK5RAP3-234ENST00000584525 PEG3Q9GZU2 1588 aa25.24■■□□□ 1.63
CDK5RAP3-234ENST00000584525 MROH2BQ7Z745 1585 aa25.22■■□□□ 1.63
CDK5RAP3-234ENST00000584525 LAMC3Q9Y6N6 1575 aa25.16■■□□□ 1.62
CDK5RAP3-234ENST00000584525 PDS5BQ9NTI5 1447 aa25.14■■□□□ 1.62
CDK5RAP3-234ENST00000584525 THOC2Q8NI27 1593 aaKnown RBP25.11■■□□□ 1.61
CDK5RAP3-234ENST00000584525 CADPSQ9ULU8 1353 aa25.04■■□□□ 1.6
CDK5RAP3-234ENST00000584525 KIF21AQ7Z4S6 1674 aa24.95■■□□□ 1.58
CDK5RAP3-234ENST00000584525 MRC2Q9UBG0 1479 aa24.89■■□□□ 1.57
CDK5RAP3-234ENST00000584525 WIZO95785 1651 aa24.85■■□□□ 1.57
CDK5RAP3-234ENST00000584525 TRIM41Q8WV44 630 aa24.82■■□□□ 1.56
CDK5RAP3-234ENST00000584525 WDR62O43379 1518 aa24.78■■□□□ 1.56
CDK5RAP3-234ENST00000584525 CEP164Q9UPV0 1460 aa24.75■■□□□ 1.55
CDK5RAP3-234ENST00000584525 FANCD2Q9BXW9 1451 aa24.71■■□□□ 1.55
CDK5RAP3-234ENST00000584525 RSF1Q96T23 1441 aaPredicted RBP24.66■■□□□ 1.54
CDK5RAP3-234ENST00000584525 CFTRP13569 1480 aa24.65■■□□□ 1.54
CDK5RAP3-234ENST00000584525 OSCARQ8IYS5 282 aa24.57■■□□□ 1.52
CDK5RAP3-234ENST00000584525 TOP2AP11388 1531 aaKnown RBP24.55■■□□□ 1.52
CDK5RAP3-234ENST00000584525 URB2Q14146 1524 aaKnown RBP24.5■■□□□ 1.51
CDK5RAP3-234ENST00000584525 CCDC88BA6NC98 1476 aa24.33■■□□□ 1.49
CDK5RAP3-234ENST00000584525 IFT140Q96RY7 1462 aa24.27■■□□□ 1.48
CDK5RAP3-234ENST00000584525 ZNF608Q9ULD9 1512 aaPredicted RBP24.26■■□□□ 1.47
CDK5RAP3-234ENST00000584525 TOPBP1Q92547 1522 aa24.2■■□□□ 1.46
CDK5RAP3-234ENST00000584525 ABCC8Q09428 1581 aa24.14■■□□□ 1.45
CDK5RAP3-234ENST00000584525 PRDM2Q13029 1718 aa24.13■■□□□ 1.45
CDK5RAP3-234ENST00000584525 RIMBP3CA6NJZ7 1639 aa24.1■■□□□ 1.45
CDK5RAP3-234ENST00000584525 RIMBP3BA6NNM3 1639 aa24.1■■□□□ 1.45
CDK5RAP3-234ENST00000584525 RIMBP3Q9UFD9 1639 aa24.1■■□□□ 1.45
CDK5RAP3-234ENST00000584525 ARHGEF11O15085 1522 aa24.05■■□□□ 1.44
CDK5RAP3-234ENST00000584525 DNMBPQ6XZF7 1577 aa24.05■■□□□ 1.44
CDK5RAP3-234ENST00000584525 AQRO60306 1485 aaKnown RBP eCLIP24.05■■□□□ 1.443e-7■■■■□ 19.4
CDK5RAP3-234ENST00000584525 CYB5RLQ6IPT4 315 aa24.04■■□□□ 1.44
CDK5RAP3-234ENST00000584525 FBLN2P98095 1184 aa24.03■■□□□ 1.44
CDK5RAP3-234ENST00000584525 EIF4G3O43432 1585 aaKnown RBP24.02■■□□□ 1.44
CDK5RAP3-234ENST00000584525 POLA1P09884 1462 aaPredicted RBP23.94■■□□□ 1.42
CDK5RAP3-234ENST00000584525 TARBP1Q13395 1621 aaKnown RBP23.92■■□□□ 1.42
CDK5RAP3-234ENST00000584525 RAD54L2Q9Y4B4 1467 aa23.9■■□□□ 1.42
CDK5RAP3-234ENST00000584525 SOGA1O94964 1423 aa23.9■■□□□ 1.42
CDK5RAP3-234ENST00000584525 TDRD9Q8NDG6 1382 aaKnown RBP23.9■■□□□ 1.42
CDK5RAP3-234ENST00000584525 TRHP20396 242 aaPredicted RBP23.86■■□□□ 1.41
CDK5RAP3-234ENST00000584525 CHD1O14646 1710 aa23.81■■□□□ 1.4
CDK5RAP3-234ENST00000584525 ARAP1Q96P48 1450 aa23.81■■□□□ 1.4
CDK5RAP3-234ENST00000584525 CHMP7Q8WUX9 453 aaPredicted RBP23.8■■□□□ 1.4
CDK5RAP3-234ENST00000584525 FGD5Q6ZNL6 1462 aa23.77■■□□□ 1.4
CDK5RAP3-234ENST00000584525 SNAPC4Q5SXM2 1469 aa23.76■■□□□ 1.39
CDK5RAP3-234ENST00000584525 CUX1P39880 1505 aa23.69■■□□□ 1.38
CDK5RAP3-234ENST00000584525 GRIN2BQ13224 1484 aa23.68■■□□□ 1.38
CDK5RAP3-234ENST00000584525 MAGI1Q96QZ7 1491 aaPredicted RBP23.67■■□□□ 1.38
CDK5RAP3-234ENST00000584525 WDR97A6NE52 1622 aa23.65■■□□□ 1.38
CDK5RAP3-234ENST00000584525 CLASP1Q7Z460 1538 aa23.62■■□□□ 1.37
CDK5RAP3-234ENST00000584525 SYNJ1O43426 1573 aa23.61■■□□□ 1.37
CDK5RAP3-234ENST00000584525 SYNJ2O15056 1496 aa23.61■■□□□ 1.37
CDK5RAP3-234ENST00000584525 GAPVD1Q14C86 1478 aa23.56■■□□□ 1.36
CDK5RAP3-234ENST00000584525 SUPT5HO00267 1087 aaKnown RBP23.55■■□□□ 1.36
CDK5RAP3-234ENST00000584525 ABCA10Q8WWZ4 1543 aa23.48■■□□□ 1.35
CDK5RAP3-234ENST00000584525 WRNQ14191 1432 aaPredicted RBP eCLIP23.41■■□□□ 1.34
CDK5RAP3-234ENST00000584525 PBRM1Q86U86 1689 aa23.4■■□□□ 1.34
CDK5RAP3-234ENST00000584525 ABCA5Q8WWZ7 1642 aa23.38■■□□□ 1.33
CDK5RAP3-234ENST00000584525 GRIN2AQ12879 1464 aa23.35■■□□□ 1.33
CDK5RAP3-234ENST00000584525 AEBP2Q6ZN18 517 aaPredicted RBP23.32■■□□□ 1.32
CDK5RAP3-234ENST00000584525 ERCC6L2Q5T890 1561 aa23.27■■□□□ 1.32
CDK5RAP3-234ENST00000584525 NUP160Q12769 1436 aa23.27■■□□□ 1.32
CDK5RAP3-234ENST00000584525 FHAD1B1AJZ9 1412 aa23.26■■□□□ 1.31
CDK5RAP3-234ENST00000584525 ADAMTS12P58397 1594 aa23.25■■□□□ 1.31
CDK5RAP3-234ENST00000584525 CEP170Q5SW79 1584 aa23.23■■□□□ 1.31
CDK5RAP3-234ENST00000584525 TOP2BQ02880 1626 aa23.22■■□□□ 1.31
CDK5RAP3-234ENST00000584525 BIVM-ERCC5R4GMW8 1640 aa23.16■■□□□ 1.3
CDK5RAP3-234ENST00000584525 ERICH3Q5RHP9 1530 aa23.15■■□□□ 1.3
CDK5RAP3-234ENST00000584525 JPH4Q96JJ6 628 aa23.15■■□□□ 1.3
CDK5RAP3-234ENST00000584525 PRG4Q92954 1404 aaPredicted RBP23.13■■□□□ 1.29
CDK5RAP3-234ENST00000584525 SHROOM2Q13796 1616 aa23.1■■□□□ 1.29
CDK5RAP3-234ENST00000584525 NPM1P06748 294 aaKnown RBP eCLIP23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms