RNA–Protein interactions for RNA: ENST00000583577.1

MKS1-212, Transcript of Meckel syndrome, type 1, humanhuman

TSL 2

Gene MKS1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-212ENST00000583577 NISCHQ9Y2I1 1504 aa23.94■■□□□ 1.42
MKS1-212ENST00000583577 ABCC9O60706 1549 aa22.72■■□□□ 1.23
MKS1-212ENST00000583577 DNAJC5BQ9UF47 199 aa22.03■■□□□ 1.12
MKS1-212ENST00000583577 CCDC180Q9P1Z9 1646 aa21.85■■□□□ 1.09
MKS1-212ENST00000583577 RB1CC1Q8TDY2 1594 aa21.21■□□□□ 0.99
MKS1-212ENST00000583577 PABPN1Q86U42 306 aaKnown RBP eCLIP21.03■□□□□ 0.96
MKS1-212ENST00000583577 UNC13AQ9UPW8 1703 aa20.84■□□□□ 0.93
MKS1-212ENST00000583577 NACADO15069 1562 aa20.83■□□□□ 0.92
MKS1-212ENST00000583577 DNAJC5Q9H3Z4 198 aa20.8■□□□□ 0.92
MKS1-212ENST00000583577 DCAF8L2P0C7V8 631 aa20.7■□□□□ 0.9
MKS1-212ENST00000583577 BICRAQ9NZM4 1560 aa20.63■□□□□ 0.89
MKS1-212ENST00000583577 CECR2Q9BXF3 1484 aa20.52■□□□□ 0.88
MKS1-212ENST00000583577 CC2D2AQ9P2K1 1620 aa20.46■□□□□ 0.87
MKS1-212ENST00000583577 MYO15BQ96JP2 1530 aa20.19■□□□□ 0.82
MKS1-212ENST00000583577 EIF4G1Q04637 1599 aaKnown RBP20.19■□□□□ 0.82
MKS1-212ENST00000583577 SHROOM4Q9ULL8 1493 aa20.16■□□□□ 0.82
MKS1-212ENST00000583577 SCRIBQ14160 1630 aa19.94■□□□□ 0.78
MKS1-212ENST00000583577 CUX2O14529 1486 aa19.84■□□□□ 0.77
MKS1-212ENST00000583577 ERCC6Q03468 1493 aa19.67■□□□□ 0.74
MKS1-212ENST00000583577 DCAF1Q9Y4B6 1507 aa19.66■□□□□ 0.74
MKS1-212ENST00000583577 TRIM41Q8WV44 630 aa19.65■□□□□ 0.74
MKS1-212ENST00000583577 ZCCHC6Q5VYS8 1495 aaKnown RBP19.64■□□□□ 0.73
MKS1-212ENST00000583577 NESP48681 1621 aa19.28■□□□□ 0.68
MKS1-212ENST00000583577 THOC2Q8NI27 1593 aaKnown RBP19.22■□□□□ 0.67
MKS1-212ENST00000583577 NCAPD3P42695 1498 aa19.22■□□□□ 0.67
MKS1-212ENST00000583577 SMARCA2P51531 1590 aa19.1■□□□□ 0.65
MKS1-212ENST00000583577 ATAD2BQ9ULI0 1458 aa19.08■□□□□ 0.64
MKS1-212ENST00000583577 KIF21AQ7Z4S6 1674 aa19.05■□□□□ 0.64
MKS1-212ENST00000583577 HMGXB3Q12766 1538 aa19.01■□□□□ 0.63
MKS1-212ENST00000583577 LAMC3Q9Y6N6 1575 aa18.96■□□□□ 0.63
MKS1-212ENST00000583577 BAZ1AQ9NRL2 1556 aaPredicted RBP18.92■□□□□ 0.62
MKS1-212ENST00000583577 SMARCA4P51532 1647 aa18.88■□□□□ 0.61
MKS1-212ENST00000583577 PDS5BQ9NTI5 1447 aa18.87■□□□□ 0.61
MKS1-212ENST00000583577 BAZ1BQ9UIG0 1483 aaKnown RBP18.87■□□□□ 0.61
MKS1-212ENST00000583577 OSCARQ8IYS5 282 aa18.83■□□□□ 0.6
MKS1-212ENST00000583577 MRC2Q9UBG0 1479 aa18.77■□□□□ 0.59
MKS1-212ENST00000583577 RIMBP3CA6NJZ7 1639 aa18.73■□□□□ 0.59
MKS1-212ENST00000583577 RIMBP3BA6NNM3 1639 aa18.73■□□□□ 0.59
MKS1-212ENST00000583577 RIMBP3Q9UFD9 1639 aa18.73■□□□□ 0.59
MKS1-212ENST00000583577 WDR62O43379 1518 aa18.73■□□□□ 0.59
MKS1-212ENST00000583577 AEBP2Q6ZN18 517 aaPredicted RBP18.67■□□□□ 0.58
MKS1-212ENST00000583577 PEG3Q9GZU2 1588 aa18.64■□□□□ 0.57
MKS1-212ENST00000583577 CADPSQ9ULU8 1353 aa18.62■□□□□ 0.57
MKS1-212ENST00000583577 TRHP20396 242 aaPredicted RBP18.6■□□□□ 0.57
MKS1-212ENST00000583577 ARHGEF11O15085 1522 aa18.54■□□□□ 0.56
MKS1-212ENST00000583577 CEP164Q9UPV0 1460 aa18.53■□□□□ 0.56
MKS1-212ENST00000583577 CYB5RLQ6IPT4 315 aa18.5■□□□□ 0.55
MKS1-212ENST00000583577 MROH2BQ7Z745 1585 aa18.47■□□□□ 0.55
MKS1-212ENST00000583577 FANCD2Q9BXW9 1451 aa18.44■□□□□ 0.54
MKS1-212ENST00000583577 URB2Q14146 1524 aaKnown RBP18.34■□□□□ 0.53
MKS1-212ENST00000583577 ARAP1Q96P48 1450 aa18.3■□□□□ 0.52
MKS1-212ENST00000583577 ZNF608Q9ULD9 1512 aaPredicted RBP18.27■□□□□ 0.51
MKS1-212ENST00000583577 WIZO95785 1651 aa18.25■□□□□ 0.51
MKS1-212ENST00000583577 CHD1O14646 1710 aa18.23■□□□□ 0.51
MKS1-212ENST00000583577 CFTRP13569 1480 aa18.21■□□□□ 0.51
MKS1-212ENST00000583577 IFT140Q96RY7 1462 aa18.18■□□□□ 0.5
MKS1-212ENST00000583577 EIF4G3O43432 1585 aaKnown RBP18.13■□□□□ 0.49
MKS1-212ENST00000583577 FBLN2P98095 1184 aa18.12■□□□□ 0.49
MKS1-212ENST00000583577 RSF1Q96T23 1441 aaPredicted RBP18.11■□□□□ 0.49
MKS1-212ENST00000583577 PRDM2Q13029 1718 aa18.09■□□□□ 0.49
MKS1-212ENST00000583577 AQRO60306 1485 aaKnown RBP eCLIP18.01■□□□□ 0.47
MKS1-212ENST00000583577 TOPBP1Q92547 1522 aa18■□□□□ 0.47
MKS1-212ENST00000583577 ILDR1Q86SU0 546 aaPredicted RBP17.97■□□□□ 0.47
MKS1-212ENST00000583577 TARBP1Q13395 1621 aaKnown RBP17.9■□□□□ 0.46
MKS1-212ENST00000583577 TOP2AP11388 1531 aaKnown RBP17.9■□□□□ 0.46
MKS1-212ENST00000583577 CLASP1Q7Z460 1538 aa17.89■□□□□ 0.45
MKS1-212ENST00000583577 ABCC8Q09428 1581 aa17.87■□□□□ 0.45
MKS1-212ENST00000583577 DNMBPQ6XZF7 1577 aa17.86■□□□□ 0.45
MKS1-212ENST00000583577 SYNJ1O43426 1573 aa17.83■□□□□ 0.45
MKS1-212ENST00000583577 CHMP7Q8WUX9 453 aaPredicted RBP17.8■□□□□ 0.44
MKS1-212ENST00000583577 GAPVD1Q14C86 1478 aa17.79■□□□□ 0.44
MKS1-212ENST00000583577 SNAPC4Q5SXM2 1469 aa17.79■□□□□ 0.44
MKS1-212ENST00000583577 TDRD9Q8NDG6 1382 aaKnown RBP17.77■□□□□ 0.43
MKS1-212ENST00000583577 POLA1P09884 1462 aaPredicted RBP17.75■□□□□ 0.43
MKS1-212ENST00000583577 RAD54L2Q9Y4B4 1467 aa17.75■□□□□ 0.43
MKS1-212ENST00000583577 CCDC88BA6NC98 1476 aa17.72■□□□□ 0.43
MKS1-212ENST00000583577 KIF13AQ9H1H9 1805 aa17.7■□□□□ 0.42
MKS1-212ENST00000583577 SOGA1O94964 1423 aa17.67■□□□□ 0.42
MKS1-212ENST00000583577 MAGI1Q96QZ7 1491 aaPredicted RBP17.67■□□□□ 0.42
MKS1-212ENST00000583577 SYNJ2O15056 1496 aa17.63■□□□□ 0.41
MKS1-212ENST00000583577 KDM4FA0A1W2PPD8 638 aa17.62■□□□□ 0.41
MKS1-212ENST00000583577 ERCC6L2Q5T890 1561 aa17.61■□□□□ 0.41
MKS1-212ENST00000583577 WDR97A6NE52 1622 aa17.61■□□□□ 0.41
MKS1-212ENST00000583577 GRIN2BQ13224 1484 aa17.59■□□□□ 0.41
MKS1-212ENST00000583577 PBRM1Q86U86 1689 aa17.56■□□□□ 0.4
MKS1-212ENST00000583577 FGD5Q6ZNL6 1462 aa17.54■□□□□ 0.4
MKS1-212ENST00000583577 FAM69CQ0P6D2 419 aa17.47■□□□□ 0.39
MKS1-212ENST00000583577 CEP170Q5SW79 1584 aa17.47■□□□□ 0.39
MKS1-212ENST00000583577 KDM6BO15054 1643 aa17.45■□□□□ 0.38
MKS1-212ENST00000583577 TSPOAP1O95153 1857 aa17.44■□□□□ 0.38
MKS1-212ENST00000583577 CUX1P39880 1505 aa17.39■□□□□ 0.37
MKS1-212ENST00000583577 ABCC10Q5T3U5 1492 aa17.38■□□□□ 0.37
MKS1-212ENST00000583577 GRIN2AQ12879 1464 aa17.37■□□□□ 0.37
MKS1-212ENST00000583577 SHROOM2Q13796 1616 aa17.37■□□□□ 0.37
MKS1-212ENST00000583577 DIP2BQ9P265 1576 aa17.35■□□□□ 0.37
MKS1-212ENST00000583577 ABCA5Q8WWZ7 1642 aa17.33■□□□□ 0.37
MKS1-212ENST00000583577 HECW2Q9P2P5 1572 aa17.33■□□□□ 0.37
MKS1-212ENST00000583577 NPM1P06748 294 aaKnown RBP eCLIP17.32■□□□□ 0.36
MKS1-212ENST00000583577 NUP160Q12769 1436 aa17.31■□□□□ 0.36
MKS1-212ENST00000583577 ADGRL1O94910 1474 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms