RNA–Protein interactions for RNA: ENST00000583548.1

NUP85-221, Transcript of nucleoporin 85, humanhuman

TSL 5

Gene NUP85, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP85-221ENST00000583548 NISCHQ9Y2I1 1504 aa16.6■□□□□ 0.25
NUP85-221ENST00000583548 ABCC9O60706 1549 aa15.68■□□□□ 0.1
NUP85-221ENST00000583548 CCDC180Q9P1Z9 1646 aa15.18■□□□□ 0.02
NUP85-221ENST00000583548 DNAJC5BQ9UF47 199 aa15.15■□□□□ 0.02
NUP85-221ENST00000583548 RB1CC1Q8TDY2 1594 aa14.74□□□□□ -0.05
NUP85-221ENST00000583548 NACADO15069 1562 aa14.51□□□□□ -0.09
NUP85-221ENST00000583548 PABPN1Q86U42 306 aaKnown RBP eCLIP14.46□□□□□ -0.09
NUP85-221ENST00000583548 DNAJC5Q9H3Z4 198 aa14.44□□□□□ -0.1
NUP85-221ENST00000583548 UNC13AQ9UPW8 1703 aa14.27□□□□□ -0.12
NUP85-221ENST00000583548 BICRAQ9NZM4 1560 aa14.24□□□□□ -0.13
NUP85-221ENST00000583548 DCAF8L2P0C7V8 631 aa14.23□□□□□ -0.13
NUP85-221ENST00000583548 CECR2Q9BXF3 1484 aa14.21□□□□□ -0.13
NUP85-221ENST00000583548 SHROOM4Q9ULL8 1493 aa14.16□□□□□ -0.14
NUP85-221ENST00000583548 MYO15BQ96JP2 1530 aa14.15□□□□□ -0.14
NUP85-221ENST00000583548 CC2D2AQ9P2K1 1620 aa14.14□□□□□ -0.15
NUP85-221ENST00000583548 EIF4G1Q04637 1599 aaKnown RBP13.98□□□□□ -0.17
NUP85-221ENST00000583548 CUX2O14529 1486 aa13.84□□□□□ -0.19
NUP85-221ENST00000583548 DCAF1Q9Y4B6 1507 aa13.73□□□□□ -0.21
NUP85-221ENST00000583548 SCRIBQ14160 1630 aa13.72□□□□□ -0.21
NUP85-221ENST00000583548 ERCC6Q03468 1493 aa13.63□□□□□ -0.23
NUP85-221ENST00000583548 ZCCHC6Q5VYS8 1495 aaKnown RBP13.63□□□□□ -0.23
NUP85-221ENST00000583548 TRIM41Q8WV44 630 aa13.53□□□□□ -0.24
NUP85-221ENST00000583548 NCAPD3P42695 1498 aa13.38□□□□□ -0.27
NUP85-221ENST00000583548 THOC2Q8NI27 1593 aaKnown RBP13.29□□□□□ -0.28
NUP85-221ENST00000583548 NESP48681 1621 aa13.26□□□□□ -0.29
NUP85-221ENST00000583548 HMGXB3Q12766 1538 aa13.24□□□□□ -0.29
NUP85-221ENST00000583548 ATAD2BQ9ULI0 1458 aa13.23□□□□□ -0.29
NUP85-221ENST00000583548 SMARCA2P51531 1590 aa13.21□□□□□ -0.29
NUP85-221ENST00000583548 LAMC3Q9Y6N6 1575 aa13.19□□□□□ -0.3
NUP85-221ENST00000583548 PDS5BQ9NTI5 1447 aa13.15□□□□□ -0.3
NUP85-221ENST00000583548 OSCARQ8IYS5 282 aa13.09□□□□□ -0.31
NUP85-221ENST00000583548 BAZ1BQ9UIG0 1483 aaKnown RBP13.09□□□□□ -0.31
NUP85-221ENST00000583548 BAZ1AQ9NRL2 1556 aaPredicted RBP13.08□□□□□ -0.32
NUP85-221ENST00000583548 KIF21AQ7Z4S6 1674 aa13.08□□□□□ -0.32
NUP85-221ENST00000583548 SMARCA4P51532 1647 aa13.06□□□□□ -0.32
NUP85-221ENST00000583548 MRC2Q9UBG0 1479 aa13.04□□□□□ -0.32
NUP85-221ENST00000583548 WDR62O43379 1518 aa13.01□□□□□ -0.33
NUP85-221ENST00000583548 PEG3Q9GZU2 1588 aa12.97□□□□□ -0.33
NUP85-221ENST00000583548 AEBP2Q6ZN18 517 aaPredicted RBP12.95□□□□□ -0.34
NUP85-221ENST00000583548 CADPSQ9ULU8 1353 aa12.94□□□□□ -0.34
NUP85-221ENST00000583548 RIMBP3CA6NJZ7 1639 aa12.92□□□□□ -0.34
NUP85-221ENST00000583548 RIMBP3BA6NNM3 1639 aa12.92□□□□□ -0.34
NUP85-221ENST00000583548 RIMBP3Q9UFD9 1639 aa12.92□□□□□ -0.34
NUP85-221ENST00000583548 CEP164Q9UPV0 1460 aa12.87□□□□□ -0.35
NUP85-221ENST00000583548 TRHP20396 242 aaPredicted RBP12.85□□□□□ -0.35
NUP85-221ENST00000583548 ARHGEF11O15085 1522 aa12.84□□□□□ -0.35
NUP85-221ENST00000583548 FANCD2Q9BXW9 1451 aa12.78□□□□□ -0.36
NUP85-221ENST00000583548 CYB5RLQ6IPT4 315 aa12.77□□□□□ -0.37
NUP85-221ENST00000583548 MROH2BQ7Z745 1585 aa12.73□□□□□ -0.37
NUP85-221ENST00000583548 URB2Q14146 1524 aaKnown RBP12.67□□□□□ -0.38
NUP85-221ENST00000583548 CFTRP13569 1480 aa12.66□□□□□ -0.38
NUP85-221ENST00000583548 ARAP1Q96P48 1450 aa12.66□□□□□ -0.38
NUP85-221ENST00000583548 IFT140Q96RY7 1462 aa12.65□□□□□ -0.38
NUP85-221ENST00000583548 RSF1Q96T23 1441 aaPredicted RBP12.64□□□□□ -0.39
NUP85-221ENST00000583548 ZNF608Q9ULD9 1512 aaPredicted RBP12.59□□□□□ -0.39
NUP85-221ENST00000583548 WIZO95785 1651 aa12.54□□□□□ -0.4
NUP85-221ENST00000583548 EIF4G3O43432 1585 aaKnown RBP12.53□□□□□ -0.4
NUP85-221ENST00000583548 CHD1O14646 1710 aa12.51□□□□□ -0.41
NUP85-221ENST00000583548 ABCC8Q09428 1581 aa12.49□□□□□ -0.41
NUP85-221ENST00000583548 FBLN2P98095 1184 aa12.49□□□□□ -0.41
NUP85-221ENST00000583548 TOPBP1Q92547 1522 aa12.47□□□□□ -0.41
NUP85-221ENST00000583548 PRDM2Q13029 1718 aa12.46□□□□□ -0.41
NUP85-221ENST00000583548 AQRO60306 1485 aaKnown RBP eCLIP12.42□□□□□ -0.422e-6■■■□□ 15.5
NUP85-221ENST00000583548 ILDR1Q86SU0 546 aaPredicted RBP12.41□□□□□ -0.42
NUP85-221ENST00000583548 TOP2AP11388 1531 aaKnown RBP12.4□□□□□ -0.42
NUP85-221ENST00000583548 CLASP1Q7Z460 1538 aa12.4□□□□□ -0.42
NUP85-221ENST00000583548 SYNJ1O43426 1573 aa12.39□□□□□ -0.43
NUP85-221ENST00000583548 DNMBPQ6XZF7 1577 aa12.39□□□□□ -0.43
NUP85-221ENST00000583548 TARBP1Q13395 1621 aaKnown RBP12.38□□□□□ -0.43
NUP85-221ENST00000583548 GAPVD1Q14C86 1478 aa12.34□□□□□ -0.43
NUP85-221ENST00000583548 CHMP7Q8WUX9 453 aaPredicted RBP12.33□□□□□ -0.44
NUP85-221ENST00000583548 WDR97A6NE52 1622 aa12.31□□□□□ -0.44
NUP85-221ENST00000583548 SNAPC4Q5SXM2 1469 aa12.3□□□□□ -0.44
NUP85-221ENST00000583548 MAGI1Q96QZ7 1491 aaPredicted RBP12.3□□□□□ -0.44
NUP85-221ENST00000583548 POLA1P09884 1462 aaPredicted RBP12.29□□□□□ -0.44
NUP85-221ENST00000583548 TDRD9Q8NDG6 1382 aaKnown RBP12.26□□□□□ -0.45
NUP85-221ENST00000583548 SYNJ2O15056 1496 aa12.26□□□□□ -0.45
NUP85-221ENST00000583548 SOGA1O94964 1423 aa12.25□□□□□ -0.45
NUP85-221ENST00000583548 CCDC88BA6NC98 1476 aa12.23□□□□□ -0.45
NUP85-221ENST00000583548 GRIN2BQ13224 1484 aa12.23□□□□□ -0.45
NUP85-221ENST00000583548 RAD54L2Q9Y4B4 1467 aa12.21□□□□□ -0.45
NUP85-221ENST00000583548 KDM4FA0A1W2PPD8 638 aa12.16□□□□□ -0.46
NUP85-221ENST00000583548 KIF13AQ9H1H9 1805 aa12.15□□□□□ -0.46
NUP85-221ENST00000583548 FGD5Q6ZNL6 1462 aa12.14□□□□□ -0.47
NUP85-221ENST00000583548 KDM6BO15054 1643 aa12.09□□□□□ -0.47
NUP85-221ENST00000583548 ERCC6L2Q5T890 1561 aa12.09□□□□□ -0.47
NUP85-221ENST00000583548 ABCC10Q5T3U5 1492 aa12.08□□□□□ -0.47
NUP85-221ENST00000583548 PBRM1Q86U86 1689 aa12.08□□□□□ -0.48
NUP85-221ENST00000583548 FAM69CQ0P6D2 419 aa12.08□□□□□ -0.48
NUP85-221ENST00000583548 CEP170Q5SW79 1584 aa12.08□□□□□ -0.48
NUP85-221ENST00000583548 NPM1P06748 294 aaKnown RBP eCLIP12.05□□□□□ -0.48
NUP85-221ENST00000583548 GRIN2AQ12879 1464 aa12.05□□□□□ -0.48
NUP85-221ENST00000583548 SHROOM2Q13796 1616 aa12.04□□□□□ -0.48
NUP85-221ENST00000583548 NUP160Q12769 1436 aa12.03□□□□□ -0.48
NUP85-221ENST00000583548 MAPKBP1O60336 1514 aa12.03□□□□□ -0.48
NUP85-221ENST00000583548 CUX1P39880 1505 aa12.01□□□□□ -0.49
NUP85-221ENST00000583548 DIP2BQ9P265 1576 aa12.01□□□□□ -0.49
NUP85-221ENST00000583548 FBXO41Q8TF61 875 aa12□□□□□ -0.49
NUP85-221ENST00000583548 ABCA5Q8WWZ7 1642 aa12□□□□□ -0.49
NUP85-221ENST00000583548 ABCA10Q8WWZ4 1543 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms