RNA–Protein interactions for RNA: ENST00000582376.1

GGA3-212, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 4

Gene GGA3, Length 551 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-212ENST00000582376 NISCHQ9Y2I1 1504 aa23.99■■□□□ 1.43
GGA3-212ENST00000582376 ABCC9O60706 1549 aa22.54■■□□□ 1.2
GGA3-212ENST00000582376 CCDC180Q9P1Z9 1646 aa21.82■■□□□ 1.08
GGA3-212ENST00000582376 DNAJC5BQ9UF47 199 aa21.76■■□□□ 1.07
GGA3-212ENST00000582376 RB1CC1Q8TDY2 1594 aa21.14■□□□□ 0.97
GGA3-212ENST00000582376 PABPN1Q86U42 306 aaKnown RBP eCLIP20.88■□□□□ 0.93
GGA3-212ENST00000582376 NACADO15069 1562 aa20.82■□□□□ 0.92
GGA3-212ENST00000582376 DCAF8L2P0C7V8 631 aa20.6■□□□□ 0.89
GGA3-212ENST00000582376 UNC13AQ9UPW8 1703 aa20.59■□□□□ 0.89
GGA3-212ENST00000582376 DNAJC5Q9H3Z4 198 aa20.53■□□□□ 0.88
GGA3-212ENST00000582376 BICRAQ9NZM4 1560 aa20.52■□□□□ 0.88
GGA3-212ENST00000582376 CECR2Q9BXF3 1484 aa20.38■□□□□ 0.85
GGA3-212ENST00000582376 CC2D2AQ9P2K1 1620 aa20.31■□□□□ 0.84
GGA3-212ENST00000582376 MYO15BQ96JP2 1530 aa20.3■□□□□ 0.84
GGA3-212ENST00000582376 SHROOM4Q9ULL8 1493 aa20.21■□□□□ 0.83
GGA3-212ENST00000582376 EIF4G1Q04637 1599 aaKnown RBP20.09■□□□□ 0.81
GGA3-212ENST00000582376 SCRIBQ14160 1630 aa19.85■□□□□ 0.77
GGA3-212ENST00000582376 DCAF1Q9Y4B6 1507 aa19.77■□□□□ 0.76
GGA3-212ENST00000582376 CUX2O14529 1486 aa19.73■□□□□ 0.75
GGA3-212ENST00000582376 ZCCHC6Q5VYS8 1495 aaKnown RBP19.73■□□□□ 0.75
GGA3-212ENST00000582376 ERCC6Q03468 1493 aa19.54■□□□□ 0.72
GGA3-212ENST00000582376 TRIM41Q8WV44 630 aa19.35■□□□□ 0.69
GGA3-212ENST00000582376 NCAPD3P42695 1498 aa19.23■□□□□ 0.67
GGA3-212ENST00000582376 NESP48681 1621 aa19.14■□□□□ 0.66
GGA3-212ENST00000582376 THOC2Q8NI27 1593 aaKnown RBP19.09■□□□□ 0.65
GGA3-212ENST00000582376 ATAD2BQ9ULI0 1458 aa19.08■□□□□ 0.64
GGA3-212ENST00000582376 HMGXB3Q12766 1538 aa19.02■□□□□ 0.64
GGA3-212ENST00000582376 SMARCA2P51531 1590 aa18.98■□□□□ 0.63
GGA3-212ENST00000582376 LAMC3Q9Y6N6 1575 aa18.9■□□□□ 0.62
GGA3-212ENST00000582376 SMARCA4P51532 1647 aa18.86■□□□□ 0.61
GGA3-212ENST00000582376 BAZ1BQ9UIG0 1483 aaKnown RBP18.86■□□□□ 0.61
GGA3-212ENST00000582376 KIF21AQ7Z4S6 1674 aa18.85■□□□□ 0.61
GGA3-212ENST00000582376 PDS5BQ9NTI5 1447 aa18.84■□□□□ 0.61
GGA3-212ENST00000582376 BAZ1AQ9NRL2 1556 aaPredicted RBP18.74■□□□□ 0.59
GGA3-212ENST00000582376 OSCARQ8IYS5 282 aa18.73■□□□□ 0.59
GGA3-212ENST00000582376 MRC2Q9UBG0 1479 aa18.71■□□□□ 0.59
GGA3-212ENST00000582376 WDR62O43379 1518 aa18.68■□□□□ 0.58
GGA3-212ENST00000582376 PEG3Q9GZU2 1588 aa18.68■□□□□ 0.58
GGA3-212ENST00000582376 CADPSQ9ULU8 1353 aa18.63■□□□□ 0.57
GGA3-212ENST00000582376 RIMBP3CA6NJZ7 1639 aa18.52■□□□□ 0.55
GGA3-212ENST00000582376 RIMBP3BA6NNM3 1639 aa18.52■□□□□ 0.55
GGA3-212ENST00000582376 RIMBP3Q9UFD9 1639 aa18.52■□□□□ 0.55
GGA3-212ENST00000582376 CEP164Q9UPV0 1460 aa18.5■□□□□ 0.55
GGA3-212ENST00000582376 MROH2BQ7Z745 1585 aa18.47■□□□□ 0.55
GGA3-212ENST00000582376 FANCD2Q9BXW9 1451 aa18.41■□□□□ 0.54
GGA3-212ENST00000582376 ARHGEF11O15085 1522 aa18.4■□□□□ 0.54
GGA3-212ENST00000582376 AEBP2Q6ZN18 517 aaPredicted RBP18.38■□□□□ 0.53
GGA3-212ENST00000582376 TRHP20396 242 aaPredicted RBP18.37■□□□□ 0.53
GGA3-212ENST00000582376 CYB5RLQ6IPT4 315 aa18.33■□□□□ 0.52
GGA3-212ENST00000582376 URB2Q14146 1524 aaKnown RBP18.29■□□□□ 0.52
GGA3-212ENST00000582376 CFTRP13569 1480 aa18.26■□□□□ 0.51
GGA3-212ENST00000582376 WIZO95785 1651 aa18.21■□□□□ 0.51
GGA3-212ENST00000582376 ZNF608Q9ULD9 1512 aaPredicted RBP18.18■□□□□ 0.5
GGA3-212ENST00000582376 ARAP1Q96P48 1450 aa18.17■□□□□ 0.5
GGA3-212ENST00000582376 IFT140Q96RY7 1462 aa18.16■□□□□ 0.5
GGA3-212ENST00000582376 RSF1Q96T23 1441 aaPredicted RBP18.06■□□□□ 0.48
GGA3-212ENST00000582376 EIF4G3O43432 1585 aaKnown RBP18.04■□□□□ 0.48
GGA3-212ENST00000582376 CHD1O14646 1710 aa18.03■□□□□ 0.48
GGA3-212ENST00000582376 FBLN2P98095 1184 aa17.99■□□□□ 0.47
GGA3-212ENST00000582376 TOPBP1Q92547 1522 aa17.98■□□□□ 0.47
GGA3-212ENST00000582376 PRDM2Q13029 1718 aa17.97■□□□□ 0.47
GGA3-212ENST00000582376 TOP2AP11388 1531 aaKnown RBP17.95■□□□□ 0.46
GGA3-212ENST00000582376 AQRO60306 1485 aaKnown RBP eCLIP17.94■□□□□ 0.462e-10■■■■□ 26.7
GGA3-212ENST00000582376 ABCC8Q09428 1581 aa17.9■□□□□ 0.46
GGA3-212ENST00000582376 TARBP1Q13395 1621 aaKnown RBP17.84■□□□□ 0.45
GGA3-212ENST00000582376 DNMBPQ6XZF7 1577 aa17.84■□□□□ 0.45
GGA3-212ENST00000582376 CLASP1Q7Z460 1538 aa17.82■□□□□ 0.44
GGA3-212ENST00000582376 SYNJ1O43426 1573 aa17.76■□□□□ 0.43
GGA3-212ENST00000582376 CCDC88BA6NC98 1476 aa17.75■□□□□ 0.43
GGA3-212ENST00000582376 POLA1P09884 1462 aaPredicted RBP17.75■□□□□ 0.43
GGA3-212ENST00000582376 CHMP7Q8WUX9 453 aaPredicted RBP17.74■□□□□ 0.43
GGA3-212ENST00000582376 SNAPC4Q5SXM2 1469 aa17.74■□□□□ 0.43
GGA3-212ENST00000582376 TDRD9Q8NDG6 1382 aaKnown RBP17.72■□□□□ 0.43
GGA3-212ENST00000582376 GAPVD1Q14C86 1478 aa17.7■□□□□ 0.42
GGA3-212ENST00000582376 RAD54L2Q9Y4B4 1467 aa17.7■□□□□ 0.42
GGA3-212ENST00000582376 SOGA1O94964 1423 aa17.67■□□□□ 0.42
GGA3-212ENST00000582376 ILDR1Q86SU0 546 aaPredicted RBP17.66■□□□□ 0.42
GGA3-212ENST00000582376 MAGI1Q96QZ7 1491 aaPredicted RBP17.66■□□□□ 0.42
GGA3-212ENST00000582376 WDR97A6NE52 1622 aa17.64■□□□□ 0.41
GGA3-212ENST00000582376 SYNJ2O15056 1496 aa17.62■□□□□ 0.41
GGA3-212ENST00000582376 GRIN2BQ13224 1484 aa17.6■□□□□ 0.41
GGA3-212ENST00000582376 FGD5Q6ZNL6 1462 aa17.54■□□□□ 0.4
GGA3-212ENST00000582376 ERCC6L2Q5T890 1561 aa17.49■□□□□ 0.39
GGA3-212ENST00000582376 KIF13AQ9H1H9 1805 aa17.46■□□□□ 0.39
GGA3-212ENST00000582376 KDM4FA0A1W2PPD8 638 aa17.44■□□□□ 0.38
GGA3-212ENST00000582376 PBRM1Q86U86 1689 aa17.44■□□□□ 0.38
GGA3-212ENST00000582376 CUX1P39880 1505 aa17.4■□□□□ 0.38
GGA3-212ENST00000582376 CEP170Q5SW79 1584 aa17.4■□□□□ 0.38
GGA3-212ENST00000582376 FAM69CQ0P6D2 419 aa17.36■□□□□ 0.37
GGA3-212ENST00000582376 GRIN2AQ12879 1464 aa17.36■□□□□ 0.37
GGA3-212ENST00000582376 NUP160Q12769 1436 aa17.33■□□□□ 0.36
GGA3-212ENST00000582376 ABCC10Q5T3U5 1492 aa17.32■□□□□ 0.36
GGA3-212ENST00000582376 ABCA5Q8WWZ7 1642 aa17.32■□□□□ 0.36
GGA3-212ENST00000582376 SHROOM2Q13796 1616 aa17.31■□□□□ 0.36
GGA3-212ENST00000582376 ABCA10Q8WWZ4 1543 aa17.3■□□□□ 0.36
GGA3-212ENST00000582376 KDM6BO15054 1643 aa17.29■□□□□ 0.36
GGA3-212ENST00000582376 NPM1P06748 294 aaKnown RBP eCLIP17.26■□□□□ 0.35
GGA3-212ENST00000582376 ADAMTS12P58397 1594 aa17.24■□□□□ 0.35
GGA3-212ENST00000582376 DIP2BQ9P265 1576 aa17.23■□□□□ 0.35
GGA3-212ENST00000582376 PRG4Q92954 1404 aaPredicted RBP17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms