RNA–Protein interactions for RNA: ENST00000581979.5

SRSF1-204, Transcript of serine and arginine rich splicing factor 1, humanhuman

TSL 1 (best)

Gene SRSF1, Length 1,720 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRSF1-204ENST00000581979 NISCHQ9Y2I1 1504 aa29.84■■■□□ 2.37
SRSF1-204ENST00000581979 CCDC180Q9P1Z9 1646 aa26.69■■□□□ 1.86
SRSF1-204ENST00000581979 ABCC9O60706 1549 aa26.44■■□□□ 1.82
SRSF1-204ENST00000581979 RB1CC1Q8TDY2 1594 aa25.29■■□□□ 1.64
SRSF1-204ENST00000581979 NACADO15069 1562 aa25.19■■□□□ 1.62
SRSF1-204ENST00000581979 DCAF8L2P0C7V8 631 aa25.01■■□□□ 1.59
SRSF1-204ENST00000581979 MYO15BQ96JP2 1530 aa24.95■■□□□ 1.59
SRSF1-204ENST00000581979 ZCCHC6Q5VYS8 1495 aaKnown RBP24.78■■□□□ 1.56
SRSF1-204ENST00000581979 DCAF1Q9Y4B6 1507 aa24.71■■□□□ 1.55
SRSF1-204ENST00000581979 UNC13AQ9UPW8 1703 aa24.7■■□□□ 1.55
SRSF1-204ENST00000581979 PABPN1Q86U42 306 aaKnown RBP eCLIP24.64■■□□□ 1.53
SRSF1-204ENST00000581979 DNAJC5BQ9UF47 199 aa24.63■■□□□ 1.53
SRSF1-204ENST00000581979 BICRAQ9NZM4 1560 aa24.56■■□□□ 1.52
SRSF1-204ENST00000581979 SHROOM4Q9ULL8 1493 aa24.28■■□□□ 1.48
SRSF1-204ENST00000581979 SCRIBQ14160 1630 aa24.28■■□□□ 1.48
SRSF1-204ENST00000581979 EIF4G1Q04637 1599 aaKnown RBP23.93■■□□□ 1.42
SRSF1-204ENST00000581979 CC2D2AQ9P2K1 1620 aa23.91■■□□□ 1.42
SRSF1-204ENST00000581979 CECR2Q9BXF3 1484 aa23.81■■□□□ 1.4
SRSF1-204ENST00000581979 NCAPD3P42695 1498 aa23.26■■□□□ 1.31
SRSF1-204ENST00000581979 SMARCA4P51532 1647 aa23.22■■□□□ 1.31
SRSF1-204ENST00000581979 ATAD2BQ9ULI0 1458 aa23.21■■□□□ 1.31
SRSF1-204ENST00000581979 SMARCA2P51531 1590 aa23.15■■□□□ 1.3
SRSF1-204ENST00000581979 BAZ1AQ9NRL2 1556 aaPredicted RBP23.15■■□□□ 1.3
SRSF1-204ENST00000581979 HMGXB3Q12766 1538 aa23.1■■□□□ 1.29
SRSF1-204ENST00000581979 PEG3Q9GZU2 1588 aa23.03■■□□□ 1.28
SRSF1-204ENST00000581979 MROH2BQ7Z745 1585 aa22.98■■□□□ 1.27
SRSF1-204ENST00000581979 BAZ1BQ9UIG0 1483 aaKnown RBP22.97■■□□□ 1.27
SRSF1-204ENST00000581979 ERCC6Q03468 1493 aa22.8■■□□□ 1.24
SRSF1-204ENST00000581979 NESP48681 1621 aa22.77■■□□□ 1.24
SRSF1-204ENST00000581979 CUX2O14529 1486 aa22.74■■□□□ 1.23
SRSF1-204ENST00000581979 WIZO95785 1651 aa22.7■■□□□ 1.22
SRSF1-204ENST00000581979 LAMC3Q9Y6N6 1575 aa22.69■■□□□ 1.22
SRSF1-204ENST00000581979 RSF1Q96T23 1441 aaPredicted RBP22.6■■□□□ 1.21
SRSF1-204ENST00000581979 CADPSQ9ULU8 1353 aa22.55■■□□□ 1.2
SRSF1-204ENST00000581979 PDS5BQ9NTI5 1447 aa22.54■■□□□ 1.2
SRSF1-204ENST00000581979 THOC2Q8NI27 1593 aaKnown RBP22.52■■□□□ 1.2
SRSF1-204ENST00000581979 KIF21AQ7Z4S6 1674 aa22.48■■□□□ 1.19
SRSF1-204ENST00000581979 DNAJC5Q9H3Z4 198 aa22.48■■□□□ 1.19
SRSF1-204ENST00000581979 TOP2AP11388 1531 aaKnown RBP22.45■■□□□ 1.18
SRSF1-204ENST00000581979 CFTRP13569 1480 aa22.35■■□□□ 1.17
SRSF1-204ENST00000581979 MRC2Q9UBG0 1479 aa22.32■■□□□ 1.16
SRSF1-204ENST00000581979 SUPT5HO00267 1087 aaKnown RBP22.29■■□□□ 1.16
SRSF1-204ENST00000581979 FANCD2Q9BXW9 1451 aa22.28■■□□□ 1.16
SRSF1-204ENST00000581979 CEP164Q9UPV0 1460 aa22.28■■□□□ 1.16
SRSF1-204ENST00000581979 WDR62O43379 1518 aa22.28■■□□□ 1.16
SRSF1-204ENST00000581979 CCDC88BA6NC98 1476 aa22.19■■□□□ 1.14
SRSF1-204ENST00000581979 PRDM2Q13029 1718 aa22.12■■□□□ 1.13
SRSF1-204ENST00000581979 URB2Q14146 1524 aaKnown RBP22.08■■□□□ 1.13
SRSF1-204ENST00000581979 TOPBP1Q92547 1522 aa21.88■■□□□ 1.09
SRSF1-204ENST00000581979 ABCC8Q09428 1581 aa21.88■■□□□ 1.09
SRSF1-204ENST00000581979 IFT140Q96RY7 1462 aa21.84■■□□□ 1.09
SRSF1-204ENST00000581979 DNMBPQ6XZF7 1577 aa21.82■■□□□ 1.08
SRSF1-204ENST00000581979 ZNF608Q9ULD9 1512 aaPredicted RBP21.76■■□□□ 1.07
SRSF1-204ENST00000581979 OSCARQ8IYS5 282 aa21.72■■□□□ 1.07
SRSF1-204ENST00000581979 TARBP1Q13395 1621 aaKnown RBP21.68■■□□□ 1.06
SRSF1-204ENST00000581979 POLA1P09884 1462 aaPredicted RBP21.67■■□□□ 1.06
SRSF1-204ENST00000581979 EIF4G3O43432 1585 aaKnown RBP21.65■■□□□ 1.06
SRSF1-204ENST00000581979 AQRO60306 1485 aaKnown RBP eCLIP21.59■■□□□ 1.057e-10■■■■■ 31
SRSF1-204ENST00000581979 CUX1P39880 1505 aa21.59■■□□□ 1.05
SRSF1-204ENST00000581979 SOGA1O94964 1423 aa21.57■■□□□ 1.04
SRSF1-204ENST00000581979 RAD54L2Q9Y4B4 1467 aa21.57■■□□□ 1.04
SRSF1-204ENST00000581979 FGD5Q6ZNL6 1462 aa21.56■■□□□ 1.04
SRSF1-204ENST00000581979 TRIM41Q8WV44 630 aa21.51■■□□□ 1.03
SRSF1-204ENST00000581979 WDR97A6NE52 1622 aa21.5■■□□□ 1.03
SRSF1-204ENST00000581979 TDRD9Q8NDG6 1382 aaKnown RBP21.49■■□□□ 1.03
SRSF1-204ENST00000581979 CHD1O14646 1710 aa21.44■■□□□ 1.02
SRSF1-204ENST00000581979 RIMBP3CA6NJZ7 1639 aa21.4■■□□□ 1.02
SRSF1-204ENST00000581979 RIMBP3BA6NNM3 1639 aa21.4■■□□□ 1.02
SRSF1-204ENST00000581979 RIMBP3Q9UFD9 1639 aa21.4■■□□□ 1.02
SRSF1-204ENST00000581979 SNAPC4Q5SXM2 1469 aa21.38■■□□□ 1.01
SRSF1-204ENST00000581979 GRIN2BQ13224 1484 aa21.37■■□□□ 1.01
SRSF1-204ENST00000581979 ARHGEF11O15085 1522 aa21.37■■□□□ 1.01
SRSF1-204ENST00000581979 FBLN2P98095 1184 aa21.37■■□□□ 1.01
SRSF1-204ENST00000581979 MAGI1Q96QZ7 1491 aaPredicted RBP21.36■■□□□ 1.01
SRSF1-204ENST00000581979 ABCA10Q8WWZ4 1543 aa21.35■■□□□ 1.01
SRSF1-204ENST00000581979 GAPVD1Q14C86 1478 aa21.32■■□□□ 1
SRSF1-204ENST00000581979 WRNQ14191 1432 aaPredicted RBP eCLIP21.3■■□□□ 1
SRSF1-204ENST00000581979 TOP2BQ02880 1626 aa21.3■■□□□ 1
SRSF1-204ENST00000581979 BIVM-ERCC5R4GMW8 1640 aa21.3■■□□□ 1
SRSF1-204ENST00000581979 ABCA5Q8WWZ7 1642 aa21.29■■□□□ 1
SRSF1-204ENST00000581979 CHMP7Q8WUX9 453 aaPredicted RBP21.28■■□□□ 1
SRSF1-204ENST00000581979 PBRM1Q86U86 1689 aa21.28■■□□□ 1
SRSF1-204ENST00000581979 SYNJ2O15056 1496 aa21.28■■□□□ 1
SRSF1-204ENST00000581979 SYNJ1O43426 1573 aa21.26■□□□□ 0.99
SRSF1-204ENST00000581979 CHIC1Q5VXU3 224 aa21.26■□□□□ 0.99
SRSF1-204ENST00000581979 CLASP1Q7Z460 1538 aa21.23■□□□□ 0.99
SRSF1-204ENST00000581979 CYB5RLQ6IPT4 315 aa21.18■□□□□ 0.98
SRSF1-204ENST00000581979 ARAP1Q96P48 1450 aa21.17■□□□□ 0.98
SRSF1-204ENST00000581979 ADAMTS12P58397 1594 aa21.1■□□□□ 0.97
SRSF1-204ENST00000581979 ERICH3Q5RHP9 1530 aa21.09■□□□□ 0.97
SRSF1-204ENST00000581979 GRIN2AQ12879 1464 aa21.09■□□□□ 0.97
SRSF1-204ENST00000581979 FHAD1B1AJZ9 1412 aa21.06■□□□□ 0.96
SRSF1-204ENST00000581979 NUP160Q12769 1436 aa21.04■□□□□ 0.96
SRSF1-204ENST00000581979 CEP170Q5SW79 1584 aa21■□□□□ 0.95
SRSF1-204ENST00000581979 SHROOM2Q13796 1616 aa20.91■□□□□ 0.94
SRSF1-204ENST00000581979 ERCC6L2Q5T890 1561 aa20.89■□□□□ 0.93
SRSF1-204ENST00000581979 KIF27Q86VH2 1401 aa20.88■□□□□ 0.93
SRSF1-204ENST00000581979 IGF1RP08069 1367 aa20.87■□□□□ 0.93
SRSF1-204ENST00000581979 TRHP20396 242 aaPredicted RBP20.84■□□□□ 0.93
SRSF1-204ENST00000581979 CUL7Q14999 1698 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms