RNA–Protein interactions for RNA: ENST00000580997.1

SENP3-204, Transcript of SUMO specific peptidase 3, humanhuman

TSL 2

Gene SENP3, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-204ENST00000580997 NISCHQ9Y2I1 1504 aa31.03■■■□□ 2.56
SENP3-204ENST00000580997 AEBP2Q6ZN18 517 aaPredicted RBP29.14■■■□□ 2.26
SENP3-204ENST00000580997 CCDC180Q9P1Z9 1646 aa27.72■■■□□ 2.03
SENP3-204ENST00000580997 ABCC9O60706 1549 aa27.53■■■□□ 2
SENP3-204ENST00000580997 CHIC1Q5VXU3 224 aa27.23■■□□□ 1.95
SENP3-204ENST00000580997 RB1CC1Q8TDY2 1594 aa26.31■■□□□ 1.8
SENP3-204ENST00000580997 NACADO15069 1562 aa26.2■■□□□ 1.79
SENP3-204ENST00000580997 DCAF8L2P0C7V8 631 aa26.07■■□□□ 1.76
SENP3-204ENST00000580997 MYO15BQ96JP2 1530 aa25.98■■□□□ 1.75
SENP3-204ENST00000580997 ZCCHC6Q5VYS8 1495 aaKnown RBP25.75■■□□□ 1.71
SENP3-204ENST00000580997 DNAJC5BQ9UF47 199 aa25.75■■□□□ 1.71
SENP3-204ENST00000580997 PABPN1Q86U42 306 aaKnown RBP eCLIP25.7■■□□□ 1.7
SENP3-204ENST00000580997 DCAF1Q9Y4B6 1507 aa25.68■■□□□ 1.7
SENP3-204ENST00000580997 UNC13AQ9UPW8 1703 aa25.65■■□□□ 1.7
SENP3-204ENST00000580997 BICRAQ9NZM4 1560 aa25.56■■□□□ 1.68
SENP3-204ENST00000580997 SHROOM4Q9ULL8 1493 aa25.28■■□□□ 1.64
SENP3-204ENST00000580997 SCRIBQ14160 1630 aa25.23■■□□□ 1.63
SENP3-204ENST00000580997 SENP3Q9H4L4 574 aaPredicted RBP25.11■■□□□ 1.61
SENP3-204ENST00000580997 EIF4G1Q04637 1599 aaKnown RBP24.9■■□□□ 1.58
SENP3-204ENST00000580997 CC2D2AQ9P2K1 1620 aa24.89■■□□□ 1.57
SENP3-204ENST00000580997 CECR2Q9BXF3 1484 aa24.81■■□□□ 1.56
SENP3-204ENST00000580997 PHF23Q9BUL5 403 aaPredicted RBP24.55■■□□□ 1.52
SENP3-204ENST00000580997 POTEDQ86YR6 584 aa24.46■■□□□ 1.51
SENP3-204ENST00000580997 NCAPD3P42695 1498 aa24.24■■□□□ 1.47
SENP3-204ENST00000580997 ATAD2BQ9ULI0 1458 aa24.15■■□□□ 1.46
SENP3-204ENST00000580997 SMARCA4P51532 1647 aa24.13■■□□□ 1.45
SENP3-204ENST00000580997 SMARCA2P51531 1590 aa24.08■■□□□ 1.44
SENP3-204ENST00000580997 BAZ1AQ9NRL2 1556 aaPredicted RBP24.06■■□□□ 1.44
SENP3-204ENST00000580997 HMGXB3Q12766 1538 aa24.02■■□□□ 1.44
SENP3-204ENST00000580997 PEG3Q9GZU2 1588 aa23.95■■□□□ 1.43
SENP3-204ENST00000580997 MROH2BQ7Z745 1585 aa23.9■■□□□ 1.42
SENP3-204ENST00000580997 BAZ1BQ9UIG0 1483 aaKnown RBP23.89■■□□□ 1.42
SENP3-204ENST00000580997 ERCC6Q03468 1493 aa23.75■■□□□ 1.39
SENP3-204ENST00000580997 NESP48681 1621 aa23.72■■□□□ 1.39
SENP3-204ENST00000580997 CUX2O14529 1486 aa23.7■■□□□ 1.38
SENP3-204ENST00000580997 LAMC3Q9Y6N6 1575 aa23.6■■□□□ 1.37
SENP3-204ENST00000580997 WIZO95785 1651 aa23.58■■□□□ 1.37
SENP3-204ENST00000580997 FOXD1Q16676 465 aa23.55■■□□□ 1.36
SENP3-204ENST00000580997 DNAJC5Q9H3Z4 198 aa23.53■■□□□ 1.36
SENP3-204ENST00000580997 RSF1Q96T23 1441 aaPredicted RBP23.5■■□□□ 1.35
SENP3-204ENST00000580997 CADPSQ9ULU8 1353 aa23.5■■□□□ 1.35
SENP3-204ENST00000580997 PDS5BQ9NTI5 1447 aa23.49■■□□□ 1.35
SENP3-204ENST00000580997 THOC2Q8NI27 1593 aaKnown RBP23.43■■□□□ 1.34
SENP3-204ENST00000580997 KIF21AQ7Z4S6 1674 aa23.36■■□□□ 1.33
SENP3-204ENST00000580997 TOP2AP11388 1531 aaKnown RBP23.32■■□□□ 1.32
SENP3-204ENST00000580997 CFTRP13569 1480 aa23.26■■□□□ 1.31
SENP3-204ENST00000580997 MRC2Q9UBG0 1479 aa23.24■■□□□ 1.31
SENP3-204ENST00000580997 WDR62O43379 1518 aa23.18■■□□□ 1.3
SENP3-204ENST00000580997 FANCD2Q9BXW9 1451 aa23.17■■□□□ 1.3
SENP3-204ENST00000580997 CEP164Q9UPV0 1460 aa23.17■■□□□ 1.3
SENP3-204ENST00000580997 CCDC88BA6NC98 1476 aa23.09■■□□□ 1.29
SENP3-204ENST00000580997 URB2Q14146 1524 aaKnown RBP22.98■■□□□ 1.27
SENP3-204ENST00000580997 PRDM2Q13029 1718 aa22.92■■□□□ 1.26
SENP3-204ENST00000580997 ABCC8Q09428 1581 aa22.76■■□□□ 1.23
SENP3-204ENST00000580997 TOPBP1Q92547 1522 aa22.76■■□□□ 1.23
SENP3-204ENST00000580997 IFT140Q96RY7 1462 aa22.73■■□□□ 1.23
SENP3-204ENST00000580997 OSCARQ8IYS5 282 aa22.69■■□□□ 1.22
SENP3-204ENST00000580997 DNMBPQ6XZF7 1577 aa22.68■■□□□ 1.22
SENP3-204ENST00000580997 ZNF608Q9ULD9 1512 aaPredicted RBP22.66■■□□□ 1.22
SENP3-204ENST00000580997 MSH5O43196 834 aa22.62■■□□□ 1.21
SENP3-204ENST00000580997 TARBP1Q13395 1621 aaKnown RBP22.55■■□□□ 1.2
SENP3-204ENST00000580997 POLA1P09884 1462 aaPredicted RBP22.54■■□□□ 1.2
SENP3-204ENST00000580997 SUPT5HO00267 1087 aaKnown RBP22.54■■□□□ 1.2
SENP3-204ENST00000580997 EIF4G3O43432 1585 aaKnown RBP22.5■■□□□ 1.19
SENP3-204ENST00000580997 AQRO60306 1485 aaKnown RBP eCLIP22.49■■□□□ 1.196e-6■■■■□ 25.1
SENP3-204ENST00000580997 SOGA1O94964 1423 aa22.47■■□□□ 1.19
SENP3-204ENST00000580997 TRIM41Q8WV44 630 aa22.46■■□□□ 1.19
SENP3-204ENST00000580997 RAD54L2Q9Y4B4 1467 aa22.45■■□□□ 1.18
SENP3-204ENST00000580997 CUX1P39880 1505 aa22.43■■□□□ 1.18
SENP3-204ENST00000580997 FGD5Q6ZNL6 1462 aa22.41■■□□□ 1.18
SENP3-204ENST00000580997 TDRD9Q8NDG6 1382 aaKnown RBP22.38■■□□□ 1.17
SENP3-204ENST00000580997 WDR97A6NE52 1622 aa22.35■■□□□ 1.17
SENP3-204ENST00000580997 RIMBP3CA6NJZ7 1639 aa22.28■■□□□ 1.16
SENP3-204ENST00000580997 RIMBP3BA6NNM3 1639 aa22.28■■□□□ 1.16
SENP3-204ENST00000580997 RIMBP3Q9UFD9 1639 aa22.28■■□□□ 1.16
SENP3-204ENST00000580997 CHD1O14646 1710 aa22.27■■□□□ 1.16
SENP3-204ENST00000580997 FBLN2P98095 1184 aa22.27■■□□□ 1.16
SENP3-204ENST00000580997 ARHGEF11O15085 1522 aa22.26■■□□□ 1.15
SENP3-204ENST00000580997 GRIN2BQ13224 1484 aa22.23■■□□□ 1.15
SENP3-204ENST00000580997 SNAPC4Q5SXM2 1469 aa22.23■■□□□ 1.15
SENP3-204ENST00000580997 MAGI1Q96QZ7 1491 aaPredicted RBP22.22■■□□□ 1.15
SENP3-204ENST00000580997 ABCA10Q8WWZ4 1543 aa22.21■■□□□ 1.15
SENP3-204ENST00000580997 GAPVD1Q14C86 1478 aa22.18■■□□□ 1.14
SENP3-204ENST00000580997 CHMP7Q8WUX9 453 aaPredicted RBP22.18■■□□□ 1.14
SENP3-204ENST00000580997 WRNQ14191 1432 aaPredicted RBP eCLIP22.16■■□□□ 1.14
SENP3-204ENST00000580997 SYNJ2O15056 1496 aa22.15■■□□□ 1.14
SENP3-204ENST00000580997 TOP2BQ02880 1626 aa22.13■■□□□ 1.13
SENP3-204ENST00000580997 ABCA5Q8WWZ7 1642 aa22.12■■□□□ 1.13
SENP3-204ENST00000580997 BIVM-ERCC5R4GMW8 1640 aa22.1■■□□□ 1.13
SENP3-204ENST00000580997 CYB5RLQ6IPT4 315 aa22.1■■□□□ 1.13
SENP3-204ENST00000580997 CLASP1Q7Z460 1538 aa22.1■■□□□ 1.13
SENP3-204ENST00000580997 SYNJ1O43426 1573 aa22.08■■□□□ 1.13
SENP3-204ENST00000580997 PBRM1Q86U86 1689 aa22.07■■□□□ 1.12
SENP3-204ENST00000580997 ARAP1Q96P48 1450 aa22.05■■□□□ 1.12
SENP3-204ENST00000580997 GRIN2AQ12879 1464 aa21.95■■□□□ 1.1
SENP3-204ENST00000580997 ADAMTS12P58397 1594 aa21.92■■□□□ 1.1
SENP3-204ENST00000580997 ERICH3Q5RHP9 1530 aa21.92■■□□□ 1.1
SENP3-204ENST00000580997 FHAD1B1AJZ9 1412 aa21.92■■□□□ 1.1
SENP3-204ENST00000580997 NUP160Q12769 1436 aa21.89■■□□□ 1.1
SENP3-204ENST00000580997 CEP170Q5SW79 1584 aa21.83■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms