RNA–Protein interactions for RNA: ENST00000580127.5

MKS1-209, Transcript of Meckel syndrome, type 1, humanhuman

TSL 5

Gene MKS1, Length 843 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-209ENST00000580127 NISCHQ9Y2I1 1504 aa44.62■■■■■ 4.73
MKS1-209ENST00000580127 ABCC9O60706 1549 aa40.21■■■■■ 4.03
MKS1-209ENST00000580127 CCDC180Q9P1Z9 1646 aa40.09■■■■■ 4.01
MKS1-209ENST00000580127 RB1CC1Q8TDY2 1594 aa38.28■■■■□ 3.72
MKS1-209ENST00000580127 NACADO15069 1562 aa37.99■■■■□ 3.67
MKS1-209ENST00000580127 DCAF8L2P0C7V8 631 aa37.96■■■■□ 3.67
MKS1-209ENST00000580127 DNAJC5BQ9UF47 199 aa37.8■■■■□ 3.64
MKS1-209ENST00000580127 PABPN1Q86U42 306 aaKnown RBP eCLIP37.47■■■■□ 3.59
MKS1-209ENST00000580127 MYO15BQ96JP2 1530 aa37.41■■■■□ 3.58
MKS1-209ENST00000580127 UNC13AQ9UPW8 1703 aa37.25■■■■□ 3.55
MKS1-209ENST00000580127 BICRAQ9NZM4 1560 aa37■■■■□ 3.51
MKS1-209ENST00000580127 ZCCHC6Q5VYS8 1495 aaKnown RBP36.88■■■■□ 3.5
MKS1-209ENST00000580127 DCAF1Q9Y4B6 1507 aa36.87■■■■□ 3.49
MKS1-209ENST00000580127 SHROOM4Q9ULL8 1493 aa36.66■■■■□ 3.46
MKS1-209ENST00000580127 SCRIBQ14160 1630 aa36.47■■■■□ 3.43
MKS1-209ENST00000580127 CC2D2AQ9P2K1 1620 aa36.3■■■■□ 3.4
MKS1-209ENST00000580127 CECR2Q9BXF3 1484 aa36.27■■■■□ 3.4
MKS1-209ENST00000580127 EIF4G1Q04637 1599 aaKnown RBP36.19■■■■□ 3.38
MKS1-209ENST00000580127 NCAPD3P42695 1498 aa35.07■■■■□ 3.2
MKS1-209ENST00000580127 DNAJC5Q9H3Z4 198 aa34.96■■■■□ 3.19
MKS1-209ENST00000580127 ATAD2BQ9ULI0 1458 aa34.9■■■■□ 3.18
MKS1-209ENST00000580127 SMARCA2P51531 1590 aa34.87■■■■□ 3.17
MKS1-209ENST00000580127 ERCC6Q03468 1493 aa34.84■■■■□ 3.17
MKS1-209ENST00000580127 SMARCA4P51532 1647 aa34.79■■■■□ 3.16
MKS1-209ENST00000580127 CUX2O14529 1486 aa34.76■■■■□ 3.15
MKS1-209ENST00000580127 HMGXB3Q12766 1538 aa34.74■■■■□ 3.15
MKS1-209ENST00000580127 BAZ1AQ9NRL2 1556 aaPredicted RBP34.68■■■■□ 3.14
MKS1-209ENST00000580127 BAZ1BQ9UIG0 1483 aaKnown RBP34.6■■■■□ 3.13
MKS1-209ENST00000580127 PEG3Q9GZU2 1588 aa34.46■■■■□ 3.11
MKS1-209ENST00000580127 NESP48681 1621 aa34.44■■■■□ 3.1
MKS1-209ENST00000580127 MROH2BQ7Z745 1585 aa34.32■■■■□ 3.09
MKS1-209ENST00000580127 LAMC3Q9Y6N6 1575 aa34.29■■■■□ 3.08
MKS1-209ENST00000580127 PDS5BQ9NTI5 1447 aa34.2■■■■□ 3.06
MKS1-209ENST00000580127 THOC2Q8NI27 1593 aaKnown RBP34.07■■■■□ 3.05
MKS1-209ENST00000580127 CADPSQ9ULU8 1353 aa34.03■■■■□ 3.04
MKS1-209ENST00000580127 KIF21AQ7Z4S6 1674 aa33.99■■■■□ 3.03
MKS1-209ENST00000580127 WIZO95785 1651 aa33.9■■■■□ 3.02
MKS1-209ENST00000580127 MRC2Q9UBG0 1479 aa33.8■■■■□ 3
MKS1-209ENST00000580127 CEP164Q9UPV0 1460 aa33.66■■■□□ 2.98
MKS1-209ENST00000580127 WDR62O43379 1518 aa33.65■■■□□ 2.98
MKS1-209ENST00000580127 RSF1Q96T23 1441 aaPredicted RBP33.62■■■□□ 2.97
MKS1-209ENST00000580127 FANCD2Q9BXW9 1451 aa33.59■■■□□ 2.97
MKS1-209ENST00000580127 CFTRP13569 1480 aa33.56■■■□□ 2.96
MKS1-209ENST00000580127 TOP2AP11388 1531 aaKnown RBP33.5■■■□□ 2.95
MKS1-209ENST00000580127 TRIM41Q8WV44 630 aa33.38■■■□□ 2.93
MKS1-209ENST00000580127 OSCARQ8IYS5 282 aa33.32■■■□□ 2.92
MKS1-209ENST00000580127 URB2Q14146 1524 aaKnown RBP33.25■■■□□ 2.91
MKS1-209ENST00000580127 PRDM2Q13029 1718 aa33.17■■■□□ 2.9
MKS1-209ENST00000580127 CCDC88BA6NC98 1476 aa33.16■■■□□ 2.9
MKS1-209ENST00000580127 IFT140Q96RY7 1462 aa33.01■■■□□ 2.88
MKS1-209ENST00000580127 ABCC8Q09428 1581 aa33■■■□□ 2.87
MKS1-209ENST00000580127 TOPBP1Q92547 1522 aa32.92■■■□□ 2.86
MKS1-209ENST00000580127 ZNF608Q9ULD9 1512 aaPredicted RBP32.86■■■□□ 2.85
MKS1-209ENST00000580127 DNMBPQ6XZF7 1577 aa32.79■■■□□ 2.84
MKS1-209ENST00000580127 EIF4G3O43432 1585 aaKnown RBP32.66■■■□□ 2.82
MKS1-209ENST00000580127 RIMBP3CA6NJZ7 1639 aa32.66■■■□□ 2.82
MKS1-209ENST00000580127 RIMBP3BA6NNM3 1639 aa32.66■■■□□ 2.82
MKS1-209ENST00000580127 RIMBP3Q9UFD9 1639 aa32.66■■■□□ 2.82
MKS1-209ENST00000580127 AQRO60306 1485 aaKnown RBP eCLIP32.61■■■□□ 2.81
MKS1-209ENST00000580127 FBLN2P98095 1184 aa32.6■■■□□ 2.81
MKS1-209ENST00000580127 TARBP1Q13395 1621 aaKnown RBP32.58■■■□□ 2.81
MKS1-209ENST00000580127 ARHGEF11O15085 1522 aa32.56■■■□□ 2.8
MKS1-209ENST00000580127 POLA1P09884 1462 aaPredicted RBP32.55■■■□□ 2.8
MKS1-209ENST00000580127 SOGA1O94964 1423 aa32.52■■■□□ 2.8
MKS1-209ENST00000580127 CYB5RLQ6IPT4 315 aa32.49■■■□□ 2.79
MKS1-209ENST00000580127 CHD1O14646 1710 aa32.46■■■□□ 2.79
MKS1-209ENST00000580127 TDRD9Q8NDG6 1382 aaKnown RBP32.44■■■□□ 2.78
MKS1-209ENST00000580127 RAD54L2Q9Y4B4 1467 aa32.43■■■□□ 2.78
MKS1-209ENST00000580127 CHMP7Q8WUX9 453 aaPredicted RBP32.35■■■□□ 2.77
MKS1-209ENST00000580127 FGD5Q6ZNL6 1462 aa32.35■■■□□ 2.77
MKS1-209ENST00000580127 WDR97A6NE52 1622 aa32.34■■■□□ 2.77
MKS1-209ENST00000580127 CUX1P39880 1505 aa32.26■■■□□ 2.75
MKS1-209ENST00000580127 SNAPC4Q5SXM2 1469 aa32.24■■■□□ 2.75
MKS1-209ENST00000580127 TRHP20396 242 aaPredicted RBP32.24■■■□□ 2.75
MKS1-209ENST00000580127 MAGI1Q96QZ7 1491 aaPredicted RBP32.23■■■□□ 2.75
MKS1-209ENST00000580127 GRIN2BQ13224 1484 aa32.23■■■□□ 2.75
MKS1-209ENST00000580127 SUPT5HO00267 1087 aaKnown RBP32.2■■■□□ 2.75
MKS1-209ENST00000580127 ARAP1Q96P48 1450 aa32.19■■■□□ 2.74
MKS1-209ENST00000580127 SYNJ1O43426 1573 aa32.15■■■□□ 2.74
MKS1-209ENST00000580127 SYNJ2O15056 1496 aa32.11■■■□□ 2.73
MKS1-209ENST00000580127 GAPVD1Q14C86 1478 aa32.09■■■□□ 2.73
MKS1-209ENST00000580127 CLASP1Q7Z460 1538 aa32.06■■■□□ 2.72
MKS1-209ENST00000580127 ABCA10Q8WWZ4 1543 aa32■■■□□ 2.71
MKS1-209ENST00000580127 PBRM1Q86U86 1689 aa31.98■■■□□ 2.71
MKS1-209ENST00000580127 WRNQ14191 1432 aaPredicted RBP eCLIP31.94■■■□□ 2.7
MKS1-209ENST00000580127 ABCA5Q8WWZ7 1642 aa31.87■■■□□ 2.69
MKS1-209ENST00000580127 GRIN2AQ12879 1464 aa31.76■■■□□ 2.67
MKS1-209ENST00000580127 TOP2BQ02880 1626 aa31.75■■■□□ 2.67
MKS1-209ENST00000580127 BIVM-ERCC5R4GMW8 1640 aa31.72■■■□□ 2.67
MKS1-209ENST00000580127 FHAD1B1AJZ9 1412 aa31.69■■■□□ 2.66
MKS1-209ENST00000580127 ADAMTS12P58397 1594 aa31.64■■■□□ 2.66
MKS1-209ENST00000580127 NUP160Q12769 1436 aa31.64■■■□□ 2.66
MKS1-209ENST00000580127 ERICH3Q5RHP9 1530 aa31.62■■■□□ 2.65
MKS1-209ENST00000580127 CEP170Q5SW79 1584 aa31.56■■■□□ 2.64
MKS1-209ENST00000580127 ERCC6L2Q5T890 1561 aa31.5■■■□□ 2.63
MKS1-209ENST00000580127 JPH4Q96JJ6 628 aa31.48■■■□□ 2.63
MKS1-209ENST00000580127 SHROOM2Q13796 1616 aa31.47■■■□□ 2.63
MKS1-209ENST00000580127 AEBP2Q6ZN18 517 aaPredicted RBP31.46■■■□□ 2.63
MKS1-209ENST00000580127 PRG4Q92954 1404 aaPredicted RBP31.42■■■□□ 2.62
MKS1-209ENST00000580127 NPM1P06748 294 aaKnown RBP eCLIP31.35■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms