RNA–Protein interactions for RNA: ENST00000579853.5

CDK5RAP3-216, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 4

Gene CDK5RAP3, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-216ENST00000579853 NISCHQ9Y2I1 1504 aa31.01■■■□□ 2.55
CDK5RAP3-216ENST00000579853 ABCC9O60706 1549 aa28.29■■■□□ 2.12
CDK5RAP3-216ENST00000579853 CCDC180Q9P1Z9 1646 aa28.01■■■□□ 2.07
CDK5RAP3-216ENST00000579853 RB1CC1Q8TDY2 1594 aa26.85■■□□□ 1.89
CDK5RAP3-216ENST00000579853 DNAJC5BQ9UF47 199 aa26.81■■□□□ 1.88
CDK5RAP3-216ENST00000579853 NACADO15069 1562 aa26.58■■□□□ 1.85
CDK5RAP3-216ENST00000579853 DCAF8L2P0C7V8 631 aa26.32■■□□□ 1.8
CDK5RAP3-216ENST00000579853 PABPN1Q86U42 306 aaKnown RBP eCLIP26.27■■□□□ 1.8
CDK5RAP3-216ENST00000579853 MYO15BQ96JP2 1530 aa26.14■■□□□ 1.78
CDK5RAP3-216ENST00000579853 UNC13AQ9UPW8 1703 aa26.14■■□□□ 1.78
CDK5RAP3-216ENST00000579853 BICRAQ9NZM4 1560 aa25.99■■□□□ 1.75
CDK5RAP3-216ENST00000579853 SHROOM4Q9ULL8 1493 aa25.77■■□□□ 1.72
CDK5RAP3-216ENST00000579853 DCAF1Q9Y4B6 1507 aa25.66■■□□□ 1.7
CDK5RAP3-216ENST00000579853 ZCCHC6Q5VYS8 1495 aaKnown RBP25.62■■□□□ 1.69
CDK5RAP3-216ENST00000579853 CECR2Q9BXF3 1484 aa25.56■■□□□ 1.68
CDK5RAP3-216ENST00000579853 CC2D2AQ9P2K1 1620 aa25.55■■□□□ 1.68
CDK5RAP3-216ENST00000579853 EIF4G1Q04637 1599 aaKnown RBP25.43■■□□□ 1.66
CDK5RAP3-216ENST00000579853 SCRIBQ14160 1630 aa25.42■■□□□ 1.66
CDK5RAP3-216ENST00000579853 AEBP2Q6ZN18 517 aaPredicted RBP25.32■■□□□ 1.64
CDK5RAP3-216ENST00000579853 DNAJC5Q9H3Z4 198 aa24.99■■□□□ 1.59
CDK5RAP3-216ENST00000579853 CUX2O14529 1486 aa24.62■■□□□ 1.53
CDK5RAP3-216ENST00000579853 NCAPD3P42695 1498 aa24.54■■□□□ 1.52
CDK5RAP3-216ENST00000579853 ERCC6Q03468 1493 aa24.51■■□□□ 1.51
CDK5RAP3-216ENST00000579853 CHIC1Q5VXU3 224 aa24.43■■□□□ 1.5
CDK5RAP3-216ENST00000579853 ATAD2BQ9ULI0 1458 aa24.38■■□□□ 1.49
CDK5RAP3-216ENST00000579853 SMARCA2P51531 1590 aa24.34■■□□□ 1.49
CDK5RAP3-216ENST00000579853 HMGXB3Q12766 1538 aa24.33■■□□□ 1.49
CDK5RAP3-216ENST00000579853 SMARCA4P51532 1647 aa24.25■■□□□ 1.47
CDK5RAP3-216ENST00000579853 NESP48681 1621 aa24.17■■□□□ 1.46
CDK5RAP3-216ENST00000579853 BAZ1BQ9UIG0 1483 aaKnown RBP24.15■■□□□ 1.46
CDK5RAP3-216ENST00000579853 BAZ1AQ9NRL2 1556 aaPredicted RBP24.13■■□□□ 1.45
CDK5RAP3-216ENST00000579853 PEG3Q9GZU2 1588 aa24.07■■□□□ 1.44
CDK5RAP3-216ENST00000579853 LAMC3Q9Y6N6 1575 aa24.05■■□□□ 1.44
CDK5RAP3-216ENST00000579853 THOC2Q8NI27 1593 aaKnown RBP24.03■■□□□ 1.44
CDK5RAP3-216ENST00000579853 PDS5BQ9NTI5 1447 aa23.95■■□□□ 1.42
CDK5RAP3-216ENST00000579853 KIF21AQ7Z4S6 1674 aa23.87■■□□□ 1.41
CDK5RAP3-216ENST00000579853 MROH2BQ7Z745 1585 aa23.84■■□□□ 1.41
CDK5RAP3-216ENST00000579853 CADPSQ9ULU8 1353 aa23.78■■□□□ 1.4
CDK5RAP3-216ENST00000579853 MRC2Q9UBG0 1479 aa23.71■■□□□ 1.39
CDK5RAP3-216ENST00000579853 TRIM41Q8WV44 630 aa23.7■■□□□ 1.38
CDK5RAP3-216ENST00000579853 WDR62O43379 1518 aa23.66■■□□□ 1.38
CDK5RAP3-216ENST00000579853 CEP164Q9UPV0 1460 aa23.56■■□□□ 1.36
CDK5RAP3-216ENST00000579853 WIZO95785 1651 aa23.52■■□□□ 1.36
CDK5RAP3-216ENST00000579853 FANCD2Q9BXW9 1451 aa23.49■■□□□ 1.35
CDK5RAP3-216ENST00000579853 OSCARQ8IYS5 282 aa23.45■■□□□ 1.34
CDK5RAP3-216ENST00000579853 CFTRP13569 1480 aa23.42■■□□□ 1.34
CDK5RAP3-216ENST00000579853 URB2Q14146 1524 aaKnown RBP23.28■■□□□ 1.32
CDK5RAP3-216ENST00000579853 TOP2AP11388 1531 aaKnown RBP23.26■■□□□ 1.31
CDK5RAP3-216ENST00000579853 RSF1Q96T23 1441 aaPredicted RBP23.25■■□□□ 1.31
CDK5RAP3-216ENST00000579853 PRDM2Q13029 1718 aa23.14■■□□□ 1.3
CDK5RAP3-216ENST00000579853 IFT140Q96RY7 1462 aa23.12■■□□□ 1.29
CDK5RAP3-216ENST00000579853 RIMBP3CA6NJZ7 1639 aa23.09■■□□□ 1.29
CDK5RAP3-216ENST00000579853 RIMBP3BA6NNM3 1639 aa23.09■■□□□ 1.29
CDK5RAP3-216ENST00000579853 RIMBP3Q9UFD9 1639 aa23.09■■□□□ 1.29
CDK5RAP3-216ENST00000579853 ZNF608Q9ULD9 1512 aaPredicted RBP23.03■■□□□ 1.28
CDK5RAP3-216ENST00000579853 ABCC8Q09428 1581 aa23.01■■□□□ 1.27
CDK5RAP3-216ENST00000579853 ARHGEF11O15085 1522 aa23.01■■□□□ 1.27
CDK5RAP3-216ENST00000579853 CCDC88BA6NC98 1476 aa22.98■■□□□ 1.27
CDK5RAP3-216ENST00000579853 TOPBP1Q92547 1522 aa22.98■■□□□ 1.27
CDK5RAP3-216ENST00000579853 EIF4G3O43432 1585 aaKnown RBP22.91■■□□□ 1.26
CDK5RAP3-216ENST00000579853 DNMBPQ6XZF7 1577 aa22.89■■□□□ 1.25
CDK5RAP3-216ENST00000579853 CYB5RLQ6IPT4 315 aa22.87■■□□□ 1.25
CDK5RAP3-216ENST00000579853 AQRO60306 1485 aaKnown RBP eCLIP22.8■■□□□ 1.243e-7■■■■□ 19.4
CDK5RAP3-216ENST00000579853 TARBP1Q13395 1621 aaKnown RBP22.8■■□□□ 1.24
CDK5RAP3-216ENST00000579853 CHD1O14646 1710 aa22.79■■□□□ 1.24
CDK5RAP3-216ENST00000579853 FBLN2P98095 1184 aa22.76■■□□□ 1.23
CDK5RAP3-216ENST00000579853 TRHP20396 242 aaPredicted RBP22.75■■□□□ 1.23
CDK5RAP3-216ENST00000579853 ARAP1Q96P48 1450 aa22.73■■□□□ 1.23
CDK5RAP3-216ENST00000579853 POLA1P09884 1462 aaPredicted RBP22.73■■□□□ 1.23
CDK5RAP3-216ENST00000579853 SOGA1O94964 1423 aa22.65■■□□□ 1.22
CDK5RAP3-216ENST00000579853 WDR97A6NE52 1622 aa22.64■■□□□ 1.21
CDK5RAP3-216ENST00000579853 TDRD9Q8NDG6 1382 aaKnown RBP22.62■■□□□ 1.21
CDK5RAP3-216ENST00000579853 RAD54L2Q9Y4B4 1467 aa22.61■■□□□ 1.21
CDK5RAP3-216ENST00000579853 CHMP7Q8WUX9 453 aaPredicted RBP22.57■■□□□ 1.2
CDK5RAP3-216ENST00000579853 SNAPC4Q5SXM2 1469 aa22.56■■□□□ 1.2
CDK5RAP3-216ENST00000579853 SYNJ1O43426 1573 aa22.55■■□□□ 1.2
CDK5RAP3-216ENST00000579853 MAGI1Q96QZ7 1491 aaPredicted RBP22.55■■□□□ 1.2
CDK5RAP3-216ENST00000579853 CLASP1Q7Z460 1538 aa22.55■■□□□ 1.2
CDK5RAP3-216ENST00000579853 FGD5Q6ZNL6 1462 aa22.53■■□□□ 1.2
CDK5RAP3-216ENST00000579853 GRIN2BQ13224 1484 aa22.5■■□□□ 1.19
CDK5RAP3-216ENST00000579853 SYNJ2O15056 1496 aa22.47■■□□□ 1.19
CDK5RAP3-216ENST00000579853 CUX1P39880 1505 aa22.42■■□□□ 1.18
CDK5RAP3-216ENST00000579853 GAPVD1Q14C86 1478 aa22.36■■□□□ 1.17
CDK5RAP3-216ENST00000579853 PBRM1Q86U86 1689 aa22.33■■□□□ 1.16
CDK5RAP3-216ENST00000579853 ABCA10Q8WWZ4 1543 aa22.29■■□□□ 1.16
CDK5RAP3-216ENST00000579853 ABCA5Q8WWZ7 1642 aa22.24■■□□□ 1.15
CDK5RAP3-216ENST00000579853 GRIN2AQ12879 1464 aa22.19■■□□□ 1.14
CDK5RAP3-216ENST00000579853 WRNQ14191 1432 aaPredicted RBP eCLIP22.15■■□□□ 1.14
CDK5RAP3-216ENST00000579853 NUP160Q12769 1436 aa22.14■■□□□ 1.13
CDK5RAP3-216ENST00000579853 ADAMTS12P58397 1594 aa22.11■■□□□ 1.13
CDK5RAP3-216ENST00000579853 CEP170Q5SW79 1584 aa22.11■■□□□ 1.13
CDK5RAP3-216ENST00000579853 ERCC6L2Q5T890 1561 aa22.1■■□□□ 1.13
CDK5RAP3-216ENST00000579853 FHAD1B1AJZ9 1412 aa22.08■■□□□ 1.13
CDK5RAP3-216ENST00000579853 SHROOM2Q13796 1616 aa22.06■■□□□ 1.12
CDK5RAP3-216ENST00000579853 ERICH3Q5RHP9 1530 aa22.02■■□□□ 1.12
CDK5RAP3-216ENST00000579853 TOP2BQ02880 1626 aa22.02■■□□□ 1.11
CDK5RAP3-216ENST00000579853 BIVM-ERCC5R4GMW8 1640 aa22.01■■□□□ 1.11
CDK5RAP3-216ENST00000579853 PRG4Q92954 1404 aaPredicted RBP21.95■■□□□ 1.1
CDK5RAP3-216ENST00000579853 SUPT5HO00267 1087 aaKnown RBP21.94■■□□□ 1.1
CDK5RAP3-216ENST00000579853 KIF13AQ9H1H9 1805 aa21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms