RNA–Protein interactions for RNA: ENST00000579308.1

CSNK1D-210, Transcript of casein kinase 1 delta, humanhuman

TSL 2

Gene CSNK1D, Length 598 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1D-210ENST00000579308 NISCHQ9Y2I1 1504 aa26.83■■□□□ 1.89
CSNK1D-210ENST00000579308 ABCC9O60706 1549 aa24.13■■□□□ 1.45
CSNK1D-210ENST00000579308 CCDC180Q9P1Z9 1646 aa23.97■■□□□ 1.43
CSNK1D-210ENST00000579308 RB1CC1Q8TDY2 1594 aa22.89■■□□□ 1.26
CSNK1D-210ENST00000579308 DNAJC5BQ9UF47 199 aa22.84■■□□□ 1.25
CSNK1D-210ENST00000579308 NACADO15069 1562 aa22.76■■□□□ 1.23
CSNK1D-210ENST00000579308 DCAF8L2P0C7V8 631 aa22.68■■□□□ 1.22
CSNK1D-210ENST00000579308 PABPN1Q86U42 306 aaKnown RBP eCLIP22.54■■□□□ 1.2
CSNK1D-210ENST00000579308 MYO15BQ96JP2 1530 aa22.49■■□□□ 1.19
CSNK1D-210ENST00000579308 BICRAQ9NZM4 1560 aa22.28■■□□□ 1.16
CSNK1D-210ENST00000579308 UNC13AQ9UPW8 1703 aa22.27■■□□□ 1.16
CSNK1D-210ENST00000579308 ZCCHC6Q5VYS8 1495 aaKnown RBP22.21■■□□□ 1.15
CSNK1D-210ENST00000579308 DCAF1Q9Y4B6 1507 aa22.16■■□□□ 1.14
CSNK1D-210ENST00000579308 SHROOM4Q9ULL8 1493 aa21.97■■□□□ 1.11
CSNK1D-210ENST00000579308 SCRIBQ14160 1630 aa21.86■■□□□ 1.09
CSNK1D-210ENST00000579308 CC2D2AQ9P2K1 1620 aa21.76■■□□□ 1.07
CSNK1D-210ENST00000579308 CECR2Q9BXF3 1484 aa21.76■■□□□ 1.07
CSNK1D-210ENST00000579308 AEBP2Q6ZN18 517 aaPredicted RBP21.73■■□□□ 1.07
CSNK1D-210ENST00000579308 EIF4G1Q04637 1599 aaKnown RBP21.71■■□□□ 1.07
CSNK1D-210ENST00000579308 NCAPD3P42695 1498 aa21.1■□□□□ 0.97
CSNK1D-210ENST00000579308 DNAJC5Q9H3Z4 198 aa21■□□□□ 0.95
CSNK1D-210ENST00000579308 ATAD2BQ9ULI0 1458 aa21■□□□□ 0.95
CSNK1D-210ENST00000579308 SMARCA4P51532 1647 aa20.87■□□□□ 0.93
CSNK1D-210ENST00000579308 SMARCA2P51531 1590 aa20.87■□□□□ 0.93
CSNK1D-210ENST00000579308 HMGXB3Q12766 1538 aa20.84■□□□□ 0.93
CSNK1D-210ENST00000579308 CUX2O14529 1486 aa20.82■□□□□ 0.92
CSNK1D-210ENST00000579308 ERCC6Q03468 1493 aa20.81■□□□□ 0.92
CSNK1D-210ENST00000579308 BAZ1AQ9NRL2 1556 aaPredicted RBP20.78■□□□□ 0.92
CSNK1D-210ENST00000579308 BAZ1BQ9UIG0 1483 aaKnown RBP20.73■□□□□ 0.91
CSNK1D-210ENST00000579308 PEG3Q9GZU2 1588 aa20.72■□□□□ 0.91
CSNK1D-210ENST00000579308 NESP48681 1621 aa20.72■□□□□ 0.91
CSNK1D-210ENST00000579308 MROH2BQ7Z745 1585 aa20.67■□□□□ 0.9
CSNK1D-210ENST00000579308 LAMC3Q9Y6N6 1575 aa20.52■□□□□ 0.88
CSNK1D-210ENST00000579308 PDS5BQ9NTI5 1447 aa20.48■□□□□ 0.87
CSNK1D-210ENST00000579308 THOC2Q8NI27 1593 aaKnown RBP20.46■□□□□ 0.87
CSNK1D-210ENST00000579308 CADPSQ9ULU8 1353 aa20.46■□□□□ 0.87
CSNK1D-210ENST00000579308 WIZO95785 1651 aa20.34■□□□□ 0.85
CSNK1D-210ENST00000579308 KIF21AQ7Z4S6 1674 aa20.32■□□□□ 0.84
CSNK1D-210ENST00000579308 MRC2Q9UBG0 1479 aa20.27■□□□□ 0.84
CSNK1D-210ENST00000579308 RSF1Q96T23 1441 aaPredicted RBP20.27■□□□□ 0.83
CSNK1D-210ENST00000579308 WDR62O43379 1518 aa20.21■□□□□ 0.83
CSNK1D-210ENST00000579308 CFTRP13569 1480 aa20.19■□□□□ 0.82
CSNK1D-210ENST00000579308 CHIC1Q5VXU3 224 aa20.16■□□□□ 0.82
CSNK1D-210ENST00000579308 FANCD2Q9BXW9 1451 aa20.16■□□□□ 0.82
CSNK1D-210ENST00000579308 CEP164Q9UPV0 1460 aa20.16■□□□□ 0.82
CSNK1D-210ENST00000579308 TOP2AP11388 1531 aaKnown RBP20.12■□□□□ 0.81
CSNK1D-210ENST00000579308 URB2Q14146 1524 aaKnown RBP20.01■□□□□ 0.79
CSNK1D-210ENST00000579308 TRIM41Q8WV44 630 aa19.96■□□□□ 0.79
CSNK1D-210ENST00000579308 CCDC88BA6NC98 1476 aa19.95■□□□□ 0.78
CSNK1D-210ENST00000579308 OSCARQ8IYS5 282 aa19.95■□□□□ 0.78
CSNK1D-210ENST00000579308 IFT140Q96RY7 1462 aa19.79■□□□□ 0.76
CSNK1D-210ENST00000579308 ZNF608Q9ULD9 1512 aaPredicted RBP19.78■□□□□ 0.76
CSNK1D-210ENST00000579308 TOPBP1Q92547 1522 aa19.76■□□□□ 0.75
CSNK1D-210ENST00000579308 PRDM2Q13029 1718 aa19.74■□□□□ 0.75
CSNK1D-210ENST00000579308 ABCC8Q09428 1581 aa19.73■□□□□ 0.75
CSNK1D-210ENST00000579308 DNMBPQ6XZF7 1577 aa19.65■□□□□ 0.74
CSNK1D-210ENST00000579308 AQRO60306 1485 aaKnown RBP eCLIP19.61■□□□□ 0.732e-9■■□□□ 12.3
CSNK1D-210ENST00000579308 POLA1P09884 1462 aaPredicted RBP19.57■□□□□ 0.72
CSNK1D-210ENST00000579308 TARBP1Q13395 1621 aaKnown RBP19.57■□□□□ 0.72
CSNK1D-210ENST00000579308 EIF4G3O43432 1585 aaKnown RBP19.57■□□□□ 0.72
CSNK1D-210ENST00000579308 RIMBP3CA6NJZ7 1639 aa19.55■□□□□ 0.72
CSNK1D-210ENST00000579308 RIMBP3BA6NNM3 1639 aa19.55■□□□□ 0.72
CSNK1D-210ENST00000579308 RIMBP3Q9UFD9 1639 aa19.55■□□□□ 0.72
CSNK1D-210ENST00000579308 ARHGEF11O15085 1522 aa19.53■□□□□ 0.72
CSNK1D-210ENST00000579308 RAD54L2Q9Y4B4 1467 aa19.52■□□□□ 0.72
CSNK1D-210ENST00000579308 SOGA1O94964 1423 aa19.51■□□□□ 0.71
CSNK1D-210ENST00000579308 TDRD9Q8NDG6 1382 aaKnown RBP19.49■□□□□ 0.71
CSNK1D-210ENST00000579308 FBLN2P98095 1184 aa19.47■□□□□ 0.71
CSNK1D-210ENST00000579308 CYB5RLQ6IPT4 315 aa19.47■□□□□ 0.71
CSNK1D-210ENST00000579308 FGD5Q6ZNL6 1462 aa19.42■□□□□ 0.7
CSNK1D-210ENST00000579308 CUX1P39880 1505 aa19.41■□□□□ 0.7
CSNK1D-210ENST00000579308 CHD1O14646 1710 aa19.38■□□□□ 0.69
CSNK1D-210ENST00000579308 SNAPC4Q5SXM2 1469 aa19.36■□□□□ 0.69
CSNK1D-210ENST00000579308 ARAP1Q96P48 1450 aa19.36■□□□□ 0.69
CSNK1D-210ENST00000579308 CHMP7Q8WUX9 453 aaPredicted RBP19.35■□□□□ 0.69
CSNK1D-210ENST00000579308 WDR97A6NE52 1622 aa19.34■□□□□ 0.69
CSNK1D-210ENST00000579308 GRIN2BQ13224 1484 aa19.32■□□□□ 0.68
CSNK1D-210ENST00000579308 MAGI1Q96QZ7 1491 aaPredicted RBP19.32■□□□□ 0.68
CSNK1D-210ENST00000579308 SUPT5HO00267 1087 aaKnown RBP19.3■□□□□ 0.68
CSNK1D-210ENST00000579308 CLASP1Q7Z460 1538 aa19.27■□□□□ 0.68
CSNK1D-210ENST00000579308 SYNJ2O15056 1496 aa19.26■□□□□ 0.67
CSNK1D-210ENST00000579308 GAPVD1Q14C86 1478 aa19.24■□□□□ 0.67
CSNK1D-210ENST00000579308 ABCA10Q8WWZ4 1543 aa19.23■□□□□ 0.67
CSNK1D-210ENST00000579308 TRHP20396 242 aaPredicted RBP19.22■□□□□ 0.67
CSNK1D-210ENST00000579308 SYNJ1O43426 1573 aa19.21■□□□□ 0.67
CSNK1D-210ENST00000579308 WRNQ14191 1432 aaPredicted RBP eCLIP19.15■□□□□ 0.665e-6■■■■■ 38.2
CSNK1D-210ENST00000579308 ABCA5Q8WWZ7 1642 aa19.13■□□□□ 0.65
CSNK1D-210ENST00000579308 PBRM1Q86U86 1689 aa19.08■□□□□ 0.65
CSNK1D-210ENST00000579308 GRIN2AQ12879 1464 aa19.05■□□□□ 0.64
CSNK1D-210ENST00000579308 TOP2BQ02880 1626 aa19.04■□□□□ 0.64
CSNK1D-210ENST00000579308 NUP160Q12769 1436 aa19.04■□□□□ 0.64
CSNK1D-210ENST00000579308 FHAD1B1AJZ9 1412 aa19.02■□□□□ 0.64
CSNK1D-210ENST00000579308 BIVM-ERCC5R4GMW8 1640 aa19■□□□□ 0.63
CSNK1D-210ENST00000579308 ADAMTS12P58397 1594 aa18.98■□□□□ 0.63
CSNK1D-210ENST00000579308 ERCC6L2Q5T890 1561 aa18.98■□□□□ 0.63
CSNK1D-210ENST00000579308 CEP170Q5SW79 1584 aa18.97■□□□□ 0.63
CSNK1D-210ENST00000579308 ERICH3Q5RHP9 1530 aa18.95■□□□□ 0.62
CSNK1D-210ENST00000579308 JPH4Q96JJ6 628 aa18.9■□□□□ 0.62
CSNK1D-210ENST00000579308 SHROOM2Q13796 1616 aa18.89■□□□□ 0.61
CSNK1D-210ENST00000579308 PRG4Q92954 1404 aaPredicted RBP18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms