RNA–Protein interactions for RNA: ENST00000578789.1

MKS1-207, Transcript of Meckel syndrome, type 1, humanhuman

TSL 4

Gene MKS1, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-207ENST00000578789 NISCHQ9Y2I1 1504 aa35.4■■■■□ 3.26
MKS1-207ENST00000578789 CCDC180Q9P1Z9 1646 aa31.57■■■□□ 2.64
MKS1-207ENST00000578789 ABCC9O60706 1549 aa30.78■■■□□ 2.52
MKS1-207ENST00000578789 RB1CC1Q8TDY2 1594 aa29.67■■■□□ 2.34
MKS1-207ENST00000578789 NACADO15069 1562 aa29.64■■■□□ 2.33
MKS1-207ENST00000578789 ZCCHC6Q5VYS8 1495 aaKnown RBP29.52■■■□□ 2.32
MKS1-207ENST00000578789 MYO15BQ96JP2 1530 aa29.5■■■□□ 2.31
MKS1-207ENST00000578789 DCAF8L2P0C7V8 631 aa29.37■■■□□ 2.29
MKS1-207ENST00000578789 DCAF1Q9Y4B6 1507 aa29.35■■■□□ 2.29
MKS1-207ENST00000578789 UNC13AQ9UPW8 1703 aa29.05■■■□□ 2.24
MKS1-207ENST00000578789 BICRAQ9NZM4 1560 aa28.79■■■□□ 2.2
MKS1-207ENST00000578789 SCRIBQ14160 1630 aa28.72■■■□□ 2.19
MKS1-207ENST00000578789 PABPN1Q86U42 306 aaKnown RBP eCLIP28.68■■■□□ 2.18
MKS1-207ENST00000578789 SHROOM4Q9ULL8 1493 aa28.53■■■□□ 2.16
MKS1-207ENST00000578789 DNAJC5BQ9UF47 199 aa28.24■■■□□ 2.11
MKS1-207ENST00000578789 EIF4G1Q04637 1599 aaKnown RBP28.02■■■□□ 2.08
MKS1-207ENST00000578789 CC2D2AQ9P2K1 1620 aa27.9■■■□□ 2.06
MKS1-207ENST00000578789 CECR2Q9BXF3 1484 aa27.68■■■□□ 2.02
MKS1-207ENST00000578789 SMARCA4P51532 1647 aa27.5■■□□□ 1.99
MKS1-207ENST00000578789 BAZ1AQ9NRL2 1556 aaPredicted RBP27.46■■□□□ 1.99
MKS1-207ENST00000578789 NCAPD3P42695 1498 aa27.32■■□□□ 1.96
MKS1-207ENST00000578789 ATAD2BQ9ULI0 1458 aa27.32■■□□□ 1.96
MKS1-207ENST00000578789 SMARCA2P51531 1590 aa27.31■■□□□ 1.96
MKS1-207ENST00000578789 PEG3Q9GZU2 1588 aa27.27■■□□□ 1.96
MKS1-207ENST00000578789 MROH2BQ7Z745 1585 aa27.26■■□□□ 1.96
MKS1-207ENST00000578789 HMGXB3Q12766 1538 aa27.23■■□□□ 1.95
MKS1-207ENST00000578789 BAZ1BQ9UIG0 1483 aaKnown RBP27.09■■□□□ 1.93
MKS1-207ENST00000578789 WIZO95785 1651 aa26.98■■□□□ 1.91
MKS1-207ENST00000578789 RSF1Q96T23 1441 aaPredicted RBP26.92■■□□□ 1.9
MKS1-207ENST00000578789 TOP2AP11388 1531 aaKnown RBP26.72■■□□□ 1.87
MKS1-207ENST00000578789 NESP48681 1621 aa26.64■■□□□ 1.85
MKS1-207ENST00000578789 LAMC3Q9Y6N6 1575 aa26.63■■□□□ 1.85
MKS1-207ENST00000578789 AEBP2Q6ZN18 517 aaPredicted RBP26.54■■□□□ 1.84
MKS1-207ENST00000578789 ERCC6Q03468 1493 aa26.53■■□□□ 1.84
MKS1-207ENST00000578789 CADPSQ9ULU8 1353 aa26.49■■□□□ 1.83
MKS1-207ENST00000578789 PDS5BQ9NTI5 1447 aa26.39■■□□□ 1.82
MKS1-207ENST00000578789 KIF21AQ7Z4S6 1674 aa26.39■■□□□ 1.82
MKS1-207ENST00000578789 CFTRP13569 1480 aa26.36■■□□□ 1.81
MKS1-207ENST00000578789 CCDC88BA6NC98 1476 aa26.35■■□□□ 1.81
MKS1-207ENST00000578789 THOC2Q8NI27 1593 aaKnown RBP26.33■■□□□ 1.81
MKS1-207ENST00000578789 CUX2O14529 1486 aa26.33■■□□□ 1.81
MKS1-207ENST00000578789 PRDM2Q13029 1718 aa26.25■■□□□ 1.79
MKS1-207ENST00000578789 FANCD2Q9BXW9 1451 aa26.2■■□□□ 1.78
MKS1-207ENST00000578789 CEP164Q9UPV0 1460 aa26.18■■□□□ 1.78
MKS1-207ENST00000578789 MRC2Q9UBG0 1479 aa26.17■■□□□ 1.78
MKS1-207ENST00000578789 WDR62O43379 1518 aa26.11■■□□□ 1.77
MKS1-207ENST00000578789 SUPT5HO00267 1087 aaKnown RBP26.07■■□□□ 1.76
MKS1-207ENST00000578789 URB2Q14146 1524 aaKnown RBP25.96■■□□□ 1.75
MKS1-207ENST00000578789 TOPBP1Q92547 1522 aa25.8■■□□□ 1.72
MKS1-207ENST00000578789 ABCC8Q09428 1581 aa25.79■■□□□ 1.72
MKS1-207ENST00000578789 DNMBPQ6XZF7 1577 aa25.79■■□□□ 1.72
MKS1-207ENST00000578789 IFT140Q96RY7 1462 aa25.65■■□□□ 1.7
MKS1-207ENST00000578789 CUX1P39880 1505 aa25.59■■□□□ 1.69
MKS1-207ENST00000578789 POLA1P09884 1462 aaPredicted RBP25.57■■□□□ 1.68
MKS1-207ENST00000578789 TARBP1Q13395 1621 aaKnown RBP25.55■■□□□ 1.68
MKS1-207ENST00000578789 FGD5Q6ZNL6 1462 aa25.5■■□□□ 1.67
MKS1-207ENST00000578789 ZNF608Q9ULD9 1512 aaPredicted RBP25.5■■□□□ 1.67
MKS1-207ENST00000578789 DNAJC5Q9H3Z4 198 aa25.47■■□□□ 1.67
MKS1-207ENST00000578789 EIF4G3O43432 1585 aaKnown RBP25.46■■□□□ 1.67
MKS1-207ENST00000578789 RAD54L2Q9Y4B4 1467 aa25.42■■□□□ 1.66
MKS1-207ENST00000578789 BIVM-ERCC5R4GMW8 1640 aa25.41■■□□□ 1.66
MKS1-207ENST00000578789 SOGA1O94964 1423 aa25.41■■□□□ 1.66
MKS1-207ENST00000578789 WDR97A6NE52 1622 aa25.39■■□□□ 1.66
MKS1-207ENST00000578789 WRNQ14191 1432 aaPredicted RBP eCLIP25.38■■□□□ 1.65
MKS1-207ENST00000578789 TOP2BQ02880 1626 aa25.38■■□□□ 1.65
MKS1-207ENST00000578789 SYNJ1O43426 1573 aa25.36■■□□□ 1.65
MKS1-207ENST00000578789 AQRO60306 1485 aaKnown RBP eCLIP25.33■■□□□ 1.65
MKS1-207ENST00000578789 ABCA10Q8WWZ4 1543 aa25.27■■□□□ 1.64
MKS1-207ENST00000578789 TDRD9Q8NDG6 1382 aaKnown RBP25.25■■□□□ 1.63
MKS1-207ENST00000578789 ABCA5Q8WWZ7 1642 aa25.21■■□□□ 1.63
MKS1-207ENST00000578789 CHIC1Q5VXU3 224 aa25.2■■□□□ 1.62
MKS1-207ENST00000578789 PBRM1Q86U86 1689 aa25.17■■□□□ 1.62
MKS1-207ENST00000578789 GRIN2BQ13224 1484 aa25.16■■□□□ 1.62
MKS1-207ENST00000578789 GAPVD1Q14C86 1478 aa25.15■■□□□ 1.62
MKS1-207ENST00000578789 CHD1O14646 1710 aa25.15■■□□□ 1.62
MKS1-207ENST00000578789 SNAPC4Q5SXM2 1469 aa25.14■■□□□ 1.61
MKS1-207ENST00000578789 MAGI1Q96QZ7 1491 aaPredicted RBP25.13■■□□□ 1.61
MKS1-207ENST00000578789 OSCARQ8IYS5 282 aa25.12■■□□□ 1.61
MKS1-207ENST00000578789 SYNJ2O15056 1496 aa25.01■■□□□ 1.59
MKS1-207ENST00000578789 ERICH3Q5RHP9 1530 aa24.98■■□□□ 1.59
MKS1-207ENST00000578789 ADAMTS12P58397 1594 aa24.97■■□□□ 1.59
MKS1-207ENST00000578789 FBLN2P98095 1184 aa24.93■■□□□ 1.58
MKS1-207ENST00000578789 CHMP7Q8WUX9 453 aaPredicted RBP24.9■■□□□ 1.58
MKS1-207ENST00000578789 CLASP1Q7Z460 1538 aa24.89■■□□□ 1.57
MKS1-207ENST00000578789 FHAD1B1AJZ9 1412 aa24.86■■□□□ 1.57
MKS1-207ENST00000578789 KIF27Q86VH2 1401 aa24.86■■□□□ 1.57
MKS1-207ENST00000578789 GRIN2AQ12879 1464 aa24.85■■□□□ 1.57
MKS1-207ENST00000578789 RIMBP3CA6NJZ7 1639 aa24.83■■□□□ 1.57
MKS1-207ENST00000578789 RIMBP3BA6NNM3 1639 aa24.83■■□□□ 1.57
MKS1-207ENST00000578789 RIMBP3Q9UFD9 1639 aa24.83■■□□□ 1.57
MKS1-207ENST00000578789 ARHGEF11O15085 1522 aa24.81■■□□□ 1.56
MKS1-207ENST00000578789 CUL7Q14999 1698 aa24.77■■□□□ 1.56
MKS1-207ENST00000578789 NUP160Q12769 1436 aa24.76■■□□□ 1.55
MKS1-207ENST00000578789 CEP170Q5SW79 1584 aa24.75■■□□□ 1.55
MKS1-207ENST00000578789 IGF1RP08069 1367 aa24.73■■□□□ 1.55
MKS1-207ENST00000578789 TRIM41Q8WV44 630 aa24.66■■□□□ 1.54
MKS1-207ENST00000578789 SHROOM2Q13796 1616 aa24.61■■□□□ 1.53
MKS1-207ENST00000578789 ARAP1Q96P48 1450 aa24.61■■□□□ 1.53
MKS1-207ENST00000578789 RUSC2Q8N2Y8 1516 aa24.61■■□□□ 1.53
MKS1-207ENST00000578789 CARMIL1Q5VZK9 1371 aa24.58■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms