RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 NISCHQ9Y2I1 1504 aa24.72■■□□□ 1.55
SS18-210ENST00000578700 ABCC9O60706 1549 aa22.57■■□□□ 1.2
SS18-210ENST00000578700 CCDC180Q9P1Z9 1646 aa22.37■■□□□ 1.17
SS18-210ENST00000578700 DNAJC5BQ9UF47 199 aa21.47■■□□□ 1.03
SS18-210ENST00000578700 RB1CC1Q8TDY2 1594 aa21.39■■□□□ 1.01
SS18-210ENST00000578700 DCAF8L2P0C7V8 631 aa21.22■□□□□ 0.99
SS18-210ENST00000578700 NACADO15069 1562 aa21.18■□□□□ 0.98
SS18-210ENST00000578700 PABPN1Q86U42 306 aaKnown RBP eCLIP21.08■□□□□ 0.97
SS18-210ENST00000578700 UNC13AQ9UPW8 1703 aa20.97■□□□□ 0.95
SS18-210ENST00000578700 MYO15BQ96JP2 1530 aa20.82■□□□□ 0.92
SS18-210ENST00000578700 BICRAQ9NZM4 1560 aa20.76■□□□□ 0.91
SS18-210ENST00000578700 SHROOM4Q9ULL8 1493 aa20.49■□□□□ 0.87
SS18-210ENST00000578700 DCAF1Q9Y4B6 1507 aa20.44■□□□□ 0.86
SS18-210ENST00000578700 ZCCHC6Q5VYS8 1495 aaKnown RBP20.43■□□□□ 0.86
SS18-210ENST00000578700 CC2D2AQ9P2K1 1620 aa20.38■□□□□ 0.85
SS18-210ENST00000578700 CECR2Q9BXF3 1484 aa20.33■□□□□ 0.85
SS18-210ENST00000578700 SCRIBQ14160 1630 aa20.29■□□□□ 0.84
SS18-210ENST00000578700 EIF4G1Q04637 1599 aaKnown RBP20.27■□□□□ 0.84
SS18-210ENST00000578700 DNAJC5Q9H3Z4 198 aa19.88■□□□□ 0.77
SS18-210ENST00000578700 CUX2O14529 1486 aa19.57■□□□□ 0.72
SS18-210ENST00000578700 NCAPD3P42695 1498 aa19.53■□□□□ 0.72
SS18-210ENST00000578700 AEBP2Q6ZN18 517 aaPredicted RBP19.52■□□□□ 0.72
SS18-210ENST00000578700 ERCC6Q03468 1493 aa19.51■□□□□ 0.71
SS18-210ENST00000578700 ATAD2BQ9ULI0 1458 aa19.41■□□□□ 0.7
SS18-210ENST00000578700 HMGXB3Q12766 1538 aa19.39■□□□□ 0.69
SS18-210ENST00000578700 SMARCA2P51531 1590 aa19.38■□□□□ 0.69
SS18-210ENST00000578700 SMARCA4P51532 1647 aa19.36■□□□□ 0.69
SS18-210ENST00000578700 NESP48681 1621 aa19.29■□□□□ 0.68
SS18-210ENST00000578700 BAZ1AQ9NRL2 1556 aaPredicted RBP19.22■□□□□ 0.67
SS18-210ENST00000578700 BAZ1BQ9UIG0 1483 aaKnown RBP19.22■□□□□ 0.67
SS18-210ENST00000578700 THOC2Q8NI27 1593 aaKnown RBP19.19■□□□□ 0.66
SS18-210ENST00000578700 PEG3Q9GZU2 1588 aa19.19■□□□□ 0.66
SS18-210ENST00000578700 LAMC3Q9Y6N6 1575 aa19.17■□□□□ 0.66
SS18-210ENST00000578700 KIF21AQ7Z4S6 1674 aa19.09■□□□□ 0.65
SS18-210ENST00000578700 TRIM41Q8WV44 630 aa19.04■□□□□ 0.64
SS18-210ENST00000578700 MROH2BQ7Z745 1585 aa19.02■□□□□ 0.64
SS18-210ENST00000578700 PDS5BQ9NTI5 1447 aa19.02■□□□□ 0.64
SS18-210ENST00000578700 CADPSQ9ULU8 1353 aa18.9■□□□□ 0.62
SS18-210ENST00000578700 MRC2Q9UBG0 1479 aa18.87■□□□□ 0.61
SS18-210ENST00000578700 WDR62O43379 1518 aa18.85■□□□□ 0.61
SS18-210ENST00000578700 WIZO95785 1651 aa18.81■□□□□ 0.6
SS18-210ENST00000578700 CEP164Q9UPV0 1460 aa18.75■□□□□ 0.59
SS18-210ENST00000578700 FANCD2Q9BXW9 1451 aa18.69■□□□□ 0.58
SS18-210ENST00000578700 OSCARQ8IYS5 282 aa18.68■□□□□ 0.58
SS18-210ENST00000578700 CFTRP13569 1480 aa18.65■□□□□ 0.58
SS18-210ENST00000578700 TOP2AP11388 1531 aaKnown RBP18.55■□□□□ 0.56
SS18-210ENST00000578700 URB2Q14146 1524 aaKnown RBP18.55■□□□□ 0.56
SS18-210ENST00000578700 PRDM2Q13029 1718 aa18.55■□□□□ 0.56
SS18-210ENST00000578700 RSF1Q96T23 1441 aaPredicted RBP18.52■□□□□ 0.56
SS18-210ENST00000578700 CHIC1Q5VXU3 224 aa18.49■□□□□ 0.55
SS18-210ENST00000578700 RIMBP3CA6NJZ7 1639 aa18.42■□□□□ 0.54
SS18-210ENST00000578700 RIMBP3BA6NNM3 1639 aa18.42■□□□□ 0.54
SS18-210ENST00000578700 RIMBP3Q9UFD9 1639 aa18.42■□□□□ 0.54
SS18-210ENST00000578700 IFT140Q96RY7 1462 aa18.38■□□□□ 0.53
SS18-210ENST00000578700 ZNF608Q9ULD9 1512 aaPredicted RBP18.36■□□□□ 0.53
SS18-210ENST00000578700 CYB5RLQ6IPT4 315 aa18.33■□□□□ 0.52
SS18-210ENST00000578700 ARHGEF11O15085 1522 aa18.32■□□□□ 0.52
SS18-210ENST00000578700 CCDC88BA6NC98 1476 aa18.32■□□□□ 0.52
SS18-210ENST00000578700 TOPBP1Q92547 1522 aa18.31■□□□□ 0.52
SS18-210ENST00000578700 ABCC8Q09428 1581 aa18.29■□□□□ 0.52
SS18-210ENST00000578700 FBLN2P98095 1184 aa18.28■□□□□ 0.52
SS18-210ENST00000578700 EIF4G3O43432 1585 aaKnown RBP18.28■□□□□ 0.52
SS18-210ENST00000578700 TRHP20396 242 aaPredicted RBP18.26■□□□□ 0.51
SS18-210ENST00000578700 DNMBPQ6XZF7 1577 aa18.25■□□□□ 0.51
SS18-210ENST00000578700 CHD1O14646 1710 aa18.23■□□□□ 0.51
SS18-210ENST00000578700 TARBP1Q13395 1621 aaKnown RBP18.21■□□□□ 0.51
SS18-210ENST00000578700 AQRO60306 1485 aaKnown RBP eCLIP18.2■□□□□ 0.55e-6■■■□□ 16.9
SS18-210ENST00000578700 ARAP1Q96P48 1450 aa18.11■□□□□ 0.49
SS18-210ENST00000578700 POLA1P09884 1462 aaPredicted RBP18.1■□□□□ 0.49
SS18-210ENST00000578700 TDRD9Q8NDG6 1382 aaKnown RBP18.07■□□□□ 0.48
SS18-210ENST00000578700 RAD54L2Q9Y4B4 1467 aa18.07■□□□□ 0.48
SS18-210ENST00000578700 SOGA1O94964 1423 aa18.05■□□□□ 0.48
SS18-210ENST00000578700 WDR97A6NE52 1622 aa18.04■□□□□ 0.48
SS18-210ENST00000578700 CHMP7Q8WUX9 453 aaPredicted RBP18.03■□□□□ 0.48
SS18-210ENST00000578700 CLASP1Q7Z460 1538 aa17.98■□□□□ 0.47
SS18-210ENST00000578700 SNAPC4Q5SXM2 1469 aa17.96■□□□□ 0.47
SS18-210ENST00000578700 SYNJ1O43426 1573 aa17.96■□□□□ 0.46
SS18-210ENST00000578700 FGD5Q6ZNL6 1462 aa17.95■□□□□ 0.46
SS18-210ENST00000578700 MAGI1Q96QZ7 1491 aaPredicted RBP17.94■□□□□ 0.46
SS18-210ENST00000578700 CUX1P39880 1505 aa17.9■□□□□ 0.46
SS18-210ENST00000578700 GRIN2BQ13224 1484 aa17.89■□□□□ 0.45
SS18-210ENST00000578700 SYNJ2O15056 1496 aa17.88■□□□□ 0.45
SS18-210ENST00000578700 PBRM1Q86U86 1689 aa17.87■□□□□ 0.45
SS18-210ENST00000578700 GAPVD1Q14C86 1478 aa17.8■□□□□ 0.44
SS18-210ENST00000578700 ABCA5Q8WWZ7 1642 aa17.76■□□□□ 0.43
SS18-210ENST00000578700 ABCA10Q8WWZ4 1543 aa17.75■□□□□ 0.43
SS18-210ENST00000578700 SUPT5HO00267 1087 aaKnown RBP17.71■□□□□ 0.43
SS18-210ENST00000578700 GRIN2AQ12879 1464 aa17.67■□□□□ 0.42
SS18-210ENST00000578700 ERCC6L2Q5T890 1561 aa17.65■□□□□ 0.42
SS18-210ENST00000578700 ADAMTS12P58397 1594 aa17.64■□□□□ 0.41
SS18-210ENST00000578700 CEP170Q5SW79 1584 aa17.63■□□□□ 0.41
SS18-210ENST00000578700 NUP160Q12769 1436 aa17.62■□□□□ 0.41
SS18-210ENST00000578700 SHROOM2Q13796 1616 aa17.61■□□□□ 0.41
SS18-210ENST00000578700 WRNQ14191 1432 aaPredicted RBP eCLIP17.61■□□□□ 0.41
SS18-210ENST00000578700 BIVM-ERCC5R4GMW8 1640 aa17.59■□□□□ 0.41
SS18-210ENST00000578700 TOP2BQ02880 1626 aa17.57■□□□□ 0.4
SS18-210ENST00000578700 KIF13AQ9H1H9 1805 aa17.56■□□□□ 0.4
SS18-210ENST00000578700 FHAD1B1AJZ9 1412 aa17.55■□□□□ 0.4
SS18-210ENST00000578700 ERICH3Q5RHP9 1530 aa17.54■□□□□ 0.4
SS18-210ENST00000578700 JPH4Q96JJ6 628 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms