RNA–Protein interactions for RNA: ENST00000578067.5

LIMD2-203, Transcript of LIM domain containing 2, humanhuman

TSL 1 (best)

Gene LIMD2, Length 2,019 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2-203ENST00000578067 NISCHQ9Y2I1 1504 aa61.34■■■■■ 7.41
LIMD2-203ENST00000578067 CCDC180Q9P1Z9 1646 aa53.13■■■■■ 6.1
LIMD2-203ENST00000578067 ZCCHC6Q5VYS8 1495 aaKnown RBP51.63■■■■■ 5.86
LIMD2-203ENST00000578067 DCAF1Q9Y4B6 1507 aa50.66■■■■■ 5.7
LIMD2-203ENST00000578067 DCAF8L2P0C7V8 631 aa50.62■■■■■ 5.69
LIMD2-203ENST00000578067 SHROOM4Q9ULL8 1493 aa50.57■■■■■ 5.69
LIMD2-203ENST00000578067 ABCC9O60706 1549 aa49.87■■■■■ 5.57
LIMD2-203ENST00000578067 MYO15BQ96JP2 1530 aa49.84■■■■■ 5.57
LIMD2-203ENST00000578067 NACADO15069 1562 aa49.39■■■■■ 5.5
LIMD2-203ENST00000578067 SCRIBQ14160 1630 aa49.05■■■■■ 5.44
LIMD2-203ENST00000578067 SUPT5HO00267 1087 aaKnown RBP48.96■■■■■ 5.43
LIMD2-203ENST00000578067 RB1CC1Q8TDY2 1594 aa48.84■■■■■ 5.41
LIMD2-203ENST00000578067 UNC13AQ9UPW8 1703 aa47.86■■■■■ 5.25
LIMD2-203ENST00000578067 RSF1Q96T23 1441 aaPredicted RBP47.85■■■■■ 5.25
LIMD2-203ENST00000578067 CECR2Q9BXF3 1484 aa47.67■■■■■ 5.22
LIMD2-203ENST00000578067 MROH2BQ7Z745 1585 aa47.44■■■■■ 5.19
LIMD2-203ENST00000578067 BICRAQ9NZM4 1560 aa47.39■■■■■ 5.18
LIMD2-203ENST00000578067 BAZ1AQ9NRL2 1556 aaPredicted RBP47.3■■■■■ 5.16
LIMD2-203ENST00000578067 PABPN1Q86U42 306 aaKnown RBP eCLIP47.2■■■■■ 5.15
LIMD2-203ENST00000578067 CHIC1Q5VXU3 224 aa47.13■■■■■ 5.14
LIMD2-203ENST00000578067 WIZO95785 1651 aa47.08■■■■■ 5.13
LIMD2-203ENST00000578067 SMARCA4P51532 1647 aa47.02■■■■■ 5.12
LIMD2-203ENST00000578067 TOP2AP11388 1531 aaKnown RBP46.57■■■■■ 5.05
LIMD2-203ENST00000578067 PEG3Q9GZU2 1588 aa46.39■■■■■ 5.02
LIMD2-203ENST00000578067 SMARCA2P51531 1590 aa46.17■■■■■ 4.98
LIMD2-203ENST00000578067 CCDC88BA6NC98 1476 aa46.16■■■■■ 4.98
LIMD2-203ENST00000578067 ATAD2BQ9ULI0 1458 aa46.13■■■■■ 4.97
LIMD2-203ENST00000578067 EIF4G1Q04637 1599 aaKnown RBP46■■■■■ 4.95
LIMD2-203ENST00000578067 TRIM41Q8WV44 630 aa45.96■■■■■ 4.95
LIMD2-203ENST00000578067 BAZ1BQ9UIG0 1483 aaKnown RBP45.9■■■■■ 4.94
LIMD2-203ENST00000578067 NCAPD3P42695 1498 aa45.62■■■■■ 4.89
LIMD2-203ENST00000578067 HMGXB3Q12766 1538 aa45.57■■■■■ 4.88
LIMD2-203ENST00000578067 LOC105371045A0A1W2PR82 267 aa45.41■■■■■ 4.86
LIMD2-203ENST00000578067 ABCC8Q09428 1581 aa45.38■■■■■ 4.86
LIMD2-203ENST00000578067 FAM9AQ8IZU1 332 aaPredicted RBP45.18■■■■■ 4.82
LIMD2-203ENST00000578067 CC2D2AQ9P2K1 1620 aa45.09■■■■■ 4.81
LIMD2-203ENST00000578067 WRNQ14191 1432 aaPredicted RBP eCLIP45.01■■■■■ 4.8
LIMD2-203ENST00000578067 SYNJ1O43426 1573 aa44.79■■■■■ 4.76
LIMD2-203ENST00000578067 CFTRP13569 1480 aa44.78■■■■■ 4.76
LIMD2-203ENST00000578067 SOGA1O94964 1423 aa44.67■■■■■ 4.74
LIMD2-203ENST00000578067 EEA1Q15075 1411 aa44.64■■■■■ 4.74
LIMD2-203ENST00000578067 EHMT2Q96KQ7 1210 aa44.57■■■■■ 4.72
LIMD2-203ENST00000578067 TOP2BQ02880 1626 aa44.54■■■■■ 4.72
LIMD2-203ENST00000578067 CADPSQ9ULU8 1353 aa44.52■■■■■ 4.72
LIMD2-203ENST00000578067 PRDM2Q13029 1718 aa44.49■■■■■ 4.71
LIMD2-203ENST00000578067 RUSC2Q8N2Y8 1516 aa44.48■■■■■ 4.71
LIMD2-203ENST00000578067 BIVM-ERCC5R4GMW8 1640 aa44.46■■■■■ 4.71
LIMD2-203ENST00000578067 CSRNP3Q8WYN3 585 aa44.41■■■■■ 4.7
LIMD2-203ENST00000578067 CUX1P39880 1505 aa44.31■■■■■ 4.68
LIMD2-203ENST00000578067 GOLGA3Q08378 1498 aa44.07■■■■■ 4.65
LIMD2-203ENST00000578067 TNIKQ9UKE5 1360 aa44.07■■■■■ 4.65
LIMD2-203ENST00000578067 FANCD2Q9BXW9 1451 aa44.02■■■■■ 4.64
LIMD2-203ENST00000578067 CEP164Q9UPV0 1460 aa44.02■■■■■ 4.64
LIMD2-203ENST00000578067 KIF21BO75037 1637 aa44.02■■■■■ 4.64
LIMD2-203ENST00000578067 NESP48681 1621 aa43.97■■■■■ 4.63
LIMD2-203ENST00000578067 LAMC3Q9Y6N6 1575 aa43.94■■■■■ 4.62
LIMD2-203ENST00000578067 UBTFP17480 764 aaKnown RBP43.93■■■■■ 4.62
LIMD2-203ENST00000578067 PCGF6Q9BYE7 350 aa43.93■■■■■ 4.62
LIMD2-203ENST00000578067 DNAJC5BQ9UF47 199 aa43.89■■■■■ 4.62
LIMD2-203ENST00000578067 CEP162Q5TB80 1403 aa43.88■■■■■ 4.61
LIMD2-203ENST00000578067 KIF27Q86VH2 1401 aa43.82■■■■■ 4.61
LIMD2-203ENST00000578067 TRIM26Q12899 539 aaPredicted RBP43.75■■■■■ 4.59
LIMD2-203ENST00000578067 FGD5Q6ZNL6 1462 aa43.74■■■■■ 4.59
LIMD2-203ENST00000578067 RAPGEF2Q9Y4G8 1499 aa43.72■■■■■ 4.59
LIMD2-203ENST00000578067 DNMBPQ6XZF7 1577 aa43.71■■■■■ 4.59
LIMD2-203ENST00000578067 PRXQ9BXM0 1461 aa43.66■■■■■ 4.58
LIMD2-203ENST00000578067 PDS5BQ9NTI5 1447 aa43.63■■■■■ 4.58
LIMD2-203ENST00000578067 ERICH3Q5RHP9 1530 aa43.61■■■■■ 4.57
LIMD2-203ENST00000578067 TOPBP1Q92547 1522 aa43.61■■■■■ 4.57
LIMD2-203ENST00000578067 CUX2O14529 1486 aa43.59■■■■■ 4.57
LIMD2-203ENST00000578067 POLA1P09884 1462 aaPredicted RBP43.45■■■■■ 4.55
LIMD2-203ENST00000578067 URB2Q14146 1524 aaKnown RBP43.44■■■■■ 4.55
LIMD2-203ENST00000578067 CLIP1P30622 1438 aa43.41■■■■■ 4.54
LIMD2-203ENST00000578067 IGF1RP08069 1367 aa43.4■■■■■ 4.54
LIMD2-203ENST00000578067 KIF21AQ7Z4S6 1674 aa43.37■■■■■ 4.53
LIMD2-203ENST00000578067 ABCA10Q8WWZ4 1543 aa43.35■■■■■ 4.53
LIMD2-203ENST00000578067 RAD54L2Q9Y4B4 1467 aa43.35■■■■■ 4.53
LIMD2-203ENST00000578067 PPARGC1BQ86YN6 1023 aaKnown RBP43.25■■■■■ 4.51
LIMD2-203ENST00000578067 CARMIL1Q5VZK9 1371 aa43.19■■■■■ 4.5
LIMD2-203ENST00000578067 HRCP23327 699 aa43.11■■■■■ 4.49
LIMD2-203ENST00000578067 WDR97A6NE52 1622 aa43.11■■■■■ 4.49
LIMD2-203ENST00000578067 VPS8Q8N3P4 1428 aa43.1■■■■■ 4.49
LIMD2-203ENST00000578067 RANGAP1P46060 587 aaPredicted RBP43.09■■■■■ 4.49
LIMD2-203ENST00000578067 MRC2Q9UBG0 1479 aa43.02■■■■■ 4.48
LIMD2-203ENST00000578067 CUL7Q14999 1698 aa42.93■■■■■ 4.46
LIMD2-203ENST00000578067 ABCA5Q8WWZ7 1642 aa42.93■■■■■ 4.46
LIMD2-203ENST00000578067 ARAP1Q96P48 1450 aa42.9■■■■■ 4.46
LIMD2-203ENST00000578067 TDRD9Q8NDG6 1382 aaKnown RBP42.89■■■■■ 4.46
LIMD2-203ENST00000578067 TARBP1Q13395 1621 aaKnown RBP42.89■■■■■ 4.46
LIMD2-203ENST00000578067 GAPVD1Q14C86 1478 aa42.85■■■■■ 4.45
LIMD2-203ENST00000578067 ARHGAP35Q9NRY4 1499 aa42.79■■■■■ 4.44
LIMD2-203ENST00000578067 TTBK1Q5TCY1 1321 aaPredicted RBP42.79■■■■■ 4.44
LIMD2-203ENST00000578067 WDR62O43379 1518 aa42.76■■■■■ 4.43
LIMD2-203ENST00000578067 APLP2Q06481 763 aa42.74■■■■■ 4.43
LIMD2-203ENST00000578067 ERCC6Q03468 1493 aa42.68■■■■■ 4.42
LIMD2-203ENST00000578067 IFT140Q96RY7 1462 aa42.59■■■■■ 4.41
LIMD2-203ENST00000578067 CTTNBP2Q8WZ74 1663 aa42.53■■■■■ 4.4
LIMD2-203ENST00000578067 PBRM1Q86U86 1689 aa42.52■■■■■ 4.4
LIMD2-203ENST00000578067 AQRO60306 1485 aaKnown RBP eCLIP42.51■■■■■ 4.4
LIMD2-203ENST00000578067 THOC2Q8NI27 1593 aaKnown RBP42.49■■■■■ 4.39
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms