RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 NISCHQ9Y2I1 1504 aa47.1■■■■■ 5.13
SS18-208ENST00000577751 CCDC180Q9P1Z9 1646 aa41.88■■■■■ 4.3
SS18-208ENST00000577751 ABCC9O60706 1549 aa40.93■■■■■ 4.14
SS18-208ENST00000577751 RB1CC1Q8TDY2 1594 aa39.39■■■■□ 3.9
SS18-208ENST00000577751 NACADO15069 1562 aa39.37■■■■□ 3.89
SS18-208ENST00000577751 DCAF8L2P0C7V8 631 aa39.25■■■■□ 3.87
SS18-208ENST00000577751 ZCCHC6Q5VYS8 1495 aaKnown RBP39.23■■■■□ 3.87
SS18-208ENST00000577751 MYO15BQ96JP2 1530 aa39.17■■■■□ 3.86
SS18-208ENST00000577751 DCAF1Q9Y4B6 1507 aa38.99■■■■□ 3.83
SS18-208ENST00000577751 UNC13AQ9UPW8 1703 aa38.55■■■■□ 3.76
SS18-208ENST00000577751 BICRAQ9NZM4 1560 aa38.24■■■■□ 3.71
SS18-208ENST00000577751 PABPN1Q86U42 306 aaKnown RBP eCLIP38.23■■■■□ 3.71
SS18-208ENST00000577751 SCRIBQ14160 1630 aa38.15■■■■□ 3.7
SS18-208ENST00000577751 SHROOM4Q9ULL8 1493 aa37.83■■■■□ 3.65
SS18-208ENST00000577751 DNAJC5BQ9UF47 199 aa37.62■■■■□ 3.61
SS18-208ENST00000577751 EIF4G1Q04637 1599 aaKnown RBP37.21■■■■□ 3.55
SS18-208ENST00000577751 CC2D2AQ9P2K1 1620 aa37.06■■■■□ 3.52
SS18-208ENST00000577751 CECR2Q9BXF3 1484 aa36.78■■■■□ 3.48
SS18-208ENST00000577751 SMARCA4P51532 1647 aa36.53■■■■□ 3.44
SS18-208ENST00000577751 BAZ1AQ9NRL2 1556 aaPredicted RBP36.49■■■■□ 3.43
SS18-208ENST00000577751 NCAPD3P42695 1498 aa36.34■■■■□ 3.41
SS18-208ENST00000577751 ATAD2BQ9ULI0 1458 aa36.34■■■■□ 3.41
SS18-208ENST00000577751 SMARCA2P51531 1590 aa36.28■■■■□ 3.4
SS18-208ENST00000577751 MROH2BQ7Z745 1585 aa36.28■■■■□ 3.4
SS18-208ENST00000577751 PEG3Q9GZU2 1588 aa36.22■■■■□ 3.39
SS18-208ENST00000577751 HMGXB3Q12766 1538 aa36.14■■■■□ 3.38
SS18-208ENST00000577751 BAZ1BQ9UIG0 1483 aaKnown RBP36■■■■□ 3.35
SS18-208ENST00000577751 WIZO95785 1651 aa35.9■■■■□ 3.34
SS18-208ENST00000577751 RSF1Q96T23 1441 aaPredicted RBP35.86■■■■□ 3.33
SS18-208ENST00000577751 TOP2AP11388 1531 aaKnown RBP35.51■■■■□ 3.27
SS18-208ENST00000577751 NESP48681 1621 aa35.43■■■■□ 3.26
SS18-208ENST00000577751 LAMC3Q9Y6N6 1575 aa35.37■■■■□ 3.25
SS18-208ENST00000577751 CADPSQ9ULU8 1353 aa35.25■■■■□ 3.23
SS18-208ENST00000577751 ERCC6Q03468 1493 aa35.24■■■■□ 3.23
SS18-208ENST00000577751 PDS5BQ9NTI5 1447 aa35.1■■■■□ 3.21
SS18-208ENST00000577751 CCDC88BA6NC98 1476 aa35.09■■■■□ 3.21
SS18-208ENST00000577751 CFTRP13569 1480 aa35.06■■■■□ 3.2
SS18-208ENST00000577751 KIF21AQ7Z4S6 1674 aa35.03■■■■□ 3.2
SS18-208ENST00000577751 CUX2O14529 1486 aa34.93■■■■□ 3.18
SS18-208ENST00000577751 THOC2Q8NI27 1593 aaKnown RBP34.91■■■■□ 3.18
SS18-208ENST00000577751 SUPT5HO00267 1087 aaKnown RBP34.88■■■■□ 3.17
SS18-208ENST00000577751 FANCD2Q9BXW9 1451 aa34.84■■■■□ 3.17
SS18-208ENST00000577751 PRDM2Q13029 1718 aa34.81■■■■□ 3.16
SS18-208ENST00000577751 CEP164Q9UPV0 1460 aa34.78■■■■□ 3.16
SS18-208ENST00000577751 MRC2Q9UBG0 1479 aa34.74■■■■□ 3.15
SS18-208ENST00000577751 WDR62O43379 1518 aa34.65■■■■□ 3.14
SS18-208ENST00000577751 URB2Q14146 1524 aaKnown RBP34.5■■■■□ 3.11
SS18-208ENST00000577751 ABCC8Q09428 1581 aa34.3■■■■□ 3.08
SS18-208ENST00000577751 TOPBP1Q92547 1522 aa34.29■■■■□ 3.08
SS18-208ENST00000577751 DNMBPQ6XZF7 1577 aa34.24■■■■□ 3.07
SS18-208ENST00000577751 IFT140Q96RY7 1462 aa34.07■■■■□ 3.04
SS18-208ENST00000577751 CUX1P39880 1505 aa34.03■■■■□ 3.04
SS18-208ENST00000577751 POLA1P09884 1462 aaPredicted RBP34■■■■□ 3.03
SS18-208ENST00000577751 TARBP1Q13395 1621 aaKnown RBP33.94■■■■□ 3.02
SS18-208ENST00000577751 ZNF608Q9ULD9 1512 aaPredicted RBP33.92■■■■□ 3.02
SS18-208ENST00000577751 FGD5Q6ZNL6 1462 aa33.9■■■■□ 3.02
SS18-208ENST00000577751 DNAJC5Q9H3Z4 198 aa33.88■■■■□ 3.01
SS18-208ENST00000577751 SOGA1O94964 1423 aa33.86■■■■□ 3.01
SS18-208ENST00000577751 RAD54L2Q9Y4B4 1467 aa33.84■■■■□ 3.01
SS18-208ENST00000577751 WRNQ14191 1432 aaPredicted RBP eCLIP33.79■■■■□ 3
SS18-208ENST00000577751 EIF4G3O43432 1585 aaKnown RBP33.78■■■■□ 3
SS18-208ENST00000577751 BIVM-ERCC5R4GMW8 1640 aa33.75■■■□□ 2.99
SS18-208ENST00000577751 TOP2BQ02880 1626 aa33.75■■■□□ 2.99
SS18-208ENST00000577751 SYNJ1O43426 1573 aa33.72■■■□□ 2.99
SS18-208ENST00000577751 AQRO60306 1485 aaKnown RBP eCLIP33.72■■■□□ 2.99
SS18-208ENST00000577751 WDR97A6NE52 1622 aa33.67■■■□□ 2.98
SS18-208ENST00000577751 TDRD9Q8NDG6 1382 aaKnown RBP33.65■■■□□ 2.98
SS18-208ENST00000577751 ABCA10Q8WWZ4 1543 aa33.59■■■□□ 2.97
SS18-208ENST00000577751 ABCA5Q8WWZ7 1642 aa33.47■■■□□ 2.95
SS18-208ENST00000577751 OSCARQ8IYS5 282 aa33.47■■■□□ 2.95
SS18-208ENST00000577751 GAPVD1Q14C86 1478 aa33.46■■■□□ 2.95
SS18-208ENST00000577751 GRIN2BQ13224 1484 aa33.45■■■□□ 2.95
SS18-208ENST00000577751 PBRM1Q86U86 1689 aa33.4■■■□□ 2.94
SS18-208ENST00000577751 SNAPC4Q5SXM2 1469 aa33.4■■■□□ 2.94
SS18-208ENST00000577751 MAGI1Q96QZ7 1491 aaPredicted RBP33.37■■■□□ 2.93
SS18-208ENST00000577751 CHD1O14646 1710 aa33.36■■■□□ 2.93
SS18-208ENST00000577751 FBLN2P98095 1184 aa33.26■■■□□ 2.91
SS18-208ENST00000577751 SYNJ2O15056 1496 aa33.25■■■□□ 2.91
SS18-208ENST00000577751 ERICH3Q5RHP9 1530 aa33.2■■■□□ 2.91
SS18-208ENST00000577751 CHMP7Q8WUX9 453 aaPredicted RBP33.2■■■□□ 2.91
SS18-208ENST00000577751 ADAMTS12P58397 1594 aa33.13■■■□□ 2.89
SS18-208ENST00000577751 KIF27Q86VH2 1401 aa33.09■■■□□ 2.89
SS18-208ENST00000577751 FHAD1B1AJZ9 1412 aa33.08■■■□□ 2.89
SS18-208ENST00000577751 GRIN2AQ12879 1464 aa33.03■■■□□ 2.88
SS18-208ENST00000577751 CLASP1Q7Z460 1538 aa33.02■■■□□ 2.88
SS18-208ENST00000577751 IGF1RP08069 1367 aa32.98■■■□□ 2.87
SS18-208ENST00000577751 TRIM41Q8WV44 630 aa32.97■■■□□ 2.87
SS18-208ENST00000577751 RIMBP3CA6NJZ7 1639 aa32.95■■■□□ 2.87
SS18-208ENST00000577751 RIMBP3BA6NNM3 1639 aa32.95■■■□□ 2.87
SS18-208ENST00000577751 RIMBP3Q9UFD9 1639 aa32.95■■■□□ 2.87
SS18-208ENST00000577751 ARHGEF11O15085 1522 aa32.93■■■□□ 2.86
SS18-208ENST00000577751 NUP160Q12769 1436 aa32.9■■■□□ 2.86
SS18-208ENST00000577751 CUL7Q14999 1698 aa32.88■■■□□ 2.85
SS18-208ENST00000577751 CEP170Q5SW79 1584 aa32.87■■■□□ 2.85
SS18-208ENST00000577751 RUSC2Q8N2Y8 1516 aa32.82■■■□□ 2.84
SS18-208ENST00000577751 CARMIL1Q5VZK9 1371 aa32.76■■■□□ 2.83
SS18-208ENST00000577751 ARAP1Q96P48 1450 aa32.67■■■□□ 2.82
SS18-208ENST00000577751 SHROOM2Q13796 1616 aa32.67■■■□□ 2.82
SS18-208ENST00000577751 CYB5RLQ6IPT4 315 aa32.61■■■□□ 2.81
SS18-208ENST00000577751 CHIC1Q5VXU3 224 aa32.6■■■□□ 2.81
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms