RNA–Protein interactions for RNA: ENST00000577246.5

COPS3-214, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 639 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-214ENST00000577246 NISCHQ9Y2I1 1504 aa33.83■■■■□ 3.01
COPS3-214ENST00000577246 ABCC9O60706 1549 aa30.78■■■□□ 2.52
COPS3-214ENST00000577246 CCDC180Q9P1Z9 1646 aa30.5■■■□□ 2.47
COPS3-214ENST00000577246 RB1CC1Q8TDY2 1594 aa29.22■■■□□ 2.27
COPS3-214ENST00000577246 DNAJC5BQ9UF47 199 aa29.08■■■□□ 2.25
COPS3-214ENST00000577246 NACADO15069 1562 aa28.95■■■□□ 2.22
COPS3-214ENST00000577246 DCAF8L2P0C7V8 631 aa28.69■■■□□ 2.18
COPS3-214ENST00000577246 PABPN1Q86U42 306 aaKnown RBP eCLIP28.59■■■□□ 2.17
COPS3-214ENST00000577246 MYO15BQ96JP2 1530 aa28.48■■■□□ 2.15
COPS3-214ENST00000577246 UNC13AQ9UPW8 1703 aa28.37■■■□□ 2.13
COPS3-214ENST00000577246 BICRAQ9NZM4 1560 aa28.28■■■□□ 2.12
COPS3-214ENST00000577246 SHROOM4Q9ULL8 1493 aa28.05■■■□□ 2.08
COPS3-214ENST00000577246 DCAF1Q9Y4B6 1507 aa27.97■■■□□ 2.07
COPS3-214ENST00000577246 ZCCHC6Q5VYS8 1495 aaKnown RBP27.97■■■□□ 2.07
COPS3-214ENST00000577246 CECR2Q9BXF3 1484 aa27.81■■■□□ 2.04
COPS3-214ENST00000577246 CC2D2AQ9P2K1 1620 aa27.78■■■□□ 2.04
COPS3-214ENST00000577246 SCRIBQ14160 1630 aa27.72■■■□□ 2.03
COPS3-214ENST00000577246 EIF4G1Q04637 1599 aaKnown RBP27.67■■■□□ 2.02
COPS3-214ENST00000577246 DNAJC5Q9H3Z4 198 aa27.05■■□□□ 1.92
COPS3-214ENST00000577246 CUX2O14529 1486 aa26.75■■□□□ 1.87
COPS3-214ENST00000577246 NCAPD3P42695 1498 aa26.72■■□□□ 1.87
COPS3-214ENST00000577246 ERCC6Q03468 1493 aa26.68■■□□□ 1.86
COPS3-214ENST00000577246 ATAD2BQ9ULI0 1458 aa26.56■■□□□ 1.84
COPS3-214ENST00000577246 SMARCA2P51531 1590 aa26.53■■□□□ 1.84
COPS3-214ENST00000577246 HMGXB3Q12766 1538 aa26.49■■□□□ 1.83
COPS3-214ENST00000577246 SMARCA4P51532 1647 aa26.43■■□□□ 1.82
COPS3-214ENST00000577246 BAZ1BQ9UIG0 1483 aaKnown RBP26.32■■□□□ 1.8
COPS3-214ENST00000577246 BAZ1AQ9NRL2 1556 aaPredicted RBP26.32■■□□□ 1.8
COPS3-214ENST00000577246 NESP48681 1621 aa26.31■■□□□ 1.8
COPS3-214ENST00000577246 PEG3Q9GZU2 1588 aa26.21■■□□□ 1.79
COPS3-214ENST00000577246 LAMC3Q9Y6N6 1575 aa26.17■■□□□ 1.78
COPS3-214ENST00000577246 THOC2Q8NI27 1593 aaKnown RBP26.13■■□□□ 1.77
COPS3-214ENST00000577246 PDS5BQ9NTI5 1447 aa26.08■■□□□ 1.77
COPS3-214ENST00000577246 MROH2BQ7Z745 1585 aa26.01■■□□□ 1.75
COPS3-214ENST00000577246 KIF21AQ7Z4S6 1674 aa25.93■■□□□ 1.74
COPS3-214ENST00000577246 CADPSQ9ULU8 1353 aa25.9■■□□□ 1.74
COPS3-214ENST00000577246 MRC2Q9UBG0 1479 aa25.83■■□□□ 1.73
COPS3-214ENST00000577246 WDR62O43379 1518 aa25.76■■□□□ 1.71
COPS3-214ENST00000577246 TRIM41Q8WV44 630 aa25.72■■□□□ 1.71
COPS3-214ENST00000577246 CEP164Q9UPV0 1460 aa25.67■■□□□ 1.7
COPS3-214ENST00000577246 WIZO95785 1651 aa25.65■■□□□ 1.7
COPS3-214ENST00000577246 FANCD2Q9BXW9 1451 aa25.59■■□□□ 1.69
COPS3-214ENST00000577246 CFTRP13569 1480 aa25.53■■□□□ 1.68
COPS3-214ENST00000577246 OSCARQ8IYS5 282 aa25.47■■□□□ 1.67
COPS3-214ENST00000577246 RSF1Q96T23 1441 aaPredicted RBP25.39■■□□□ 1.66
COPS3-214ENST00000577246 TOP2AP11388 1531 aaKnown RBP25.39■■□□□ 1.66
COPS3-214ENST00000577246 URB2Q14146 1524 aaKnown RBP25.35■■□□□ 1.65
COPS3-214ENST00000577246 IFT140Q96RY7 1462 aa25.18■■□□□ 1.62
COPS3-214ENST00000577246 PRDM2Q13029 1718 aa25.15■■□□□ 1.62
COPS3-214ENST00000577246 ZNF608Q9ULD9 1512 aaPredicted RBP25.08■■□□□ 1.61
COPS3-214ENST00000577246 CCDC88BA6NC98 1476 aa25.08■■□□□ 1.6
COPS3-214ENST00000577246 RIMBP3CA6NJZ7 1639 aa25.08■■□□□ 1.6
COPS3-214ENST00000577246 RIMBP3BA6NNM3 1639 aa25.08■■□□□ 1.6
COPS3-214ENST00000577246 RIMBP3Q9UFD9 1639 aa25.08■■□□□ 1.6
COPS3-214ENST00000577246 ABCC8Q09428 1581 aa25.06■■□□□ 1.6
COPS3-214ENST00000577246 TOPBP1Q92547 1522 aa25.05■■□□□ 1.6
COPS3-214ENST00000577246 ARHGEF11O15085 1522 aa25.01■■□□□ 1.59
COPS3-214ENST00000577246 EIF4G3O43432 1585 aaKnown RBP24.95■■□□□ 1.58
COPS3-214ENST00000577246 DNMBPQ6XZF7 1577 aa24.94■■□□□ 1.58
COPS3-214ENST00000577246 CYB5RLQ6IPT4 315 aa24.86■■□□□ 1.57
COPS3-214ENST00000577246 AQRO60306 1485 aaKnown RBP eCLIP24.83■■□□□ 1.56
COPS3-214ENST00000577246 TARBP1Q13395 1621 aaKnown RBP24.82■■□□□ 1.56
COPS3-214ENST00000577246 FBLN2P98095 1184 aa24.79■■□□□ 1.56
COPS3-214ENST00000577246 POLA1P09884 1462 aaPredicted RBP24.77■■□□□ 1.56
COPS3-214ENST00000577246 CHD1O14646 1710 aa24.76■■□□□ 1.55
COPS3-214ENST00000577246 ARAP1Q96P48 1450 aa24.72■■□□□ 1.55
COPS3-214ENST00000577246 TRHP20396 242 aaPredicted RBP24.72■■□□□ 1.55
COPS3-214ENST00000577246 SOGA1O94964 1423 aa24.69■■□□□ 1.54
COPS3-214ENST00000577246 RAD54L2Q9Y4B4 1467 aa24.65■■□□□ 1.54
COPS3-214ENST00000577246 WDR97A6NE52 1622 aa24.65■■□□□ 1.54
COPS3-214ENST00000577246 TDRD9Q8NDG6 1382 aaKnown RBP24.64■■□□□ 1.53
COPS3-214ENST00000577246 SNAPC4Q5SXM2 1469 aa24.6■■□□□ 1.53
COPS3-214ENST00000577246 CHMP7Q8WUX9 453 aaPredicted RBP24.58■■□□□ 1.53
COPS3-214ENST00000577246 FGD5Q6ZNL6 1462 aa24.57■■□□□ 1.52
COPS3-214ENST00000577246 MAGI1Q96QZ7 1491 aaPredicted RBP24.57■■□□□ 1.52
COPS3-214ENST00000577246 SYNJ1O43426 1573 aa24.55■■□□□ 1.52
COPS3-214ENST00000577246 CLASP1Q7Z460 1538 aa24.54■■□□□ 1.52
COPS3-214ENST00000577246 GRIN2BQ13224 1484 aa24.53■■□□□ 1.52
COPS3-214ENST00000577246 SYNJ2O15056 1496 aa24.48■■□□□ 1.51
COPS3-214ENST00000577246 CUX1P39880 1505 aa24.47■■□□□ 1.51
COPS3-214ENST00000577246 GAPVD1Q14C86 1478 aa24.38■■□□□ 1.49
COPS3-214ENST00000577246 PBRM1Q86U86 1689 aa24.3■■□□□ 1.48
COPS3-214ENST00000577246 ABCA10Q8WWZ4 1543 aa24.3■■□□□ 1.48
COPS3-214ENST00000577246 AEBP2Q6ZN18 517 aaPredicted RBP24.28■■□□□ 1.48
COPS3-214ENST00000577246 ABCA5Q8WWZ7 1642 aa24.25■■□□□ 1.47
COPS3-214ENST00000577246 GRIN2AQ12879 1464 aa24.19■■□□□ 1.46
COPS3-214ENST00000577246 WRNQ14191 1432 aaPredicted RBP eCLIP24.18■■□□□ 1.46
COPS3-214ENST00000577246 NUP160Q12769 1436 aa24.12■■□□□ 1.45
COPS3-214ENST00000577246 ADAMTS12P58397 1594 aa24.1■■□□□ 1.45
COPS3-214ENST00000577246 FHAD1B1AJZ9 1412 aa24.08■■□□□ 1.44
COPS3-214ENST00000577246 CEP170Q5SW79 1584 aa24.08■■□□□ 1.44
COPS3-214ENST00000577246 ERCC6L2Q5T890 1561 aa24.06■■□□□ 1.44
COPS3-214ENST00000577246 SUPT5HO00267 1087 aaKnown RBP24.02■■□□□ 1.44
COPS3-214ENST00000577246 TOP2BQ02880 1626 aa24.02■■□□□ 1.44
COPS3-214ENST00000577246 ERICH3Q5RHP9 1530 aa24■■□□□ 1.43
COPS3-214ENST00000577246 SHROOM2Q13796 1616 aa24■■□□□ 1.43
COPS3-214ENST00000577246 BIVM-ERCC5R4GMW8 1640 aa24■■□□□ 1.43
COPS3-214ENST00000577246 PRG4Q92954 1404 aaPredicted RBP23.92■■□□□ 1.42
COPS3-214ENST00000577246 JPH4Q96JJ6 628 aa23.88■■□□□ 1.41
COPS3-214ENST00000577246 NPM1P06748 294 aaKnown RBP eCLIP23.83■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms