RNA–Protein interactions for RNA: ENST00000575338.1

SMG6-217, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-217ENST00000575338 NISCHQ9Y2I1 1504 aa14.9□□□□□ -0.02
SMG6-217ENST00000575338 CCDC180Q9P1Z9 1646 aa13.06□□□□□ -0.32
SMG6-217ENST00000575338 ZCCHC6Q5VYS8 1495 aaKnown RBP12.56□□□□□ -0.4
SMG6-217ENST00000575338 DCAF1Q9Y4B6 1507 aa12.42□□□□□ -0.42
SMG6-217ENST00000575338 MYO15BQ96JP2 1530 aa12.22□□□□□ -0.45
SMG6-217ENST00000575338 DCAF8L2P0C7V8 631 aa12.13□□□□□ -0.47
SMG6-217ENST00000575338 SHROOM4Q9ULL8 1493 aa12.12□□□□□ -0.47
SMG6-217ENST00000575338 NACADO15069 1562 aa12.07□□□□□ -0.48
SMG6-217ENST00000575338 ABCC9O60706 1549 aa11.96□□□□□ -0.49
SMG6-217ENST00000575338 RB1CC1Q8TDY2 1594 aa11.93□□□□□ -0.5
SMG6-217ENST00000575338 SCRIBQ14160 1630 aa11.88□□□□□ -0.51
SMG6-217ENST00000575338 SUPT5HO00267 1087 aaKnown RBP11.79□□□□□ -0.52
SMG6-217ENST00000575338 UNC13AQ9UPW8 1703 aa11.67□□□□□ -0.54
SMG6-217ENST00000575338 RSF1Q96T23 1441 aaPredicted RBP11.56□□□□□ -0.56
SMG6-217ENST00000575338 BAZ1AQ9NRL2 1556 aaPredicted RBP11.56□□□□□ -0.56
SMG6-217ENST00000575338 SMARCA4P51532 1647 aa11.45□□□□□ -0.58
SMG6-217ENST00000575338 MROH2BQ7Z745 1585 aa11.45□□□□□ -0.58
SMG6-217ENST00000575338 CECR2Q9BXF3 1484 aa11.44□□□□□ -0.58
SMG6-217ENST00000575338 BICRAQ9NZM4 1560 aa11.43□□□□□ -0.58
SMG6-217ENST00000575338 WIZO95785 1651 aa11.42□□□□□ -0.58
SMG6-217ENST00000575338 CHIC1Q5VXU3 224 aa11.4□□□□□ -0.58
SMG6-217ENST00000575338 TOP2AP11388 1531 aaKnown RBP11.36□□□□□ -0.59
SMG6-217ENST00000575338 PEG3Q9GZU2 1588 aa11.33□□□□□ -0.6
SMG6-217ENST00000575338 SMARCA2P51531 1590 aa11.27□□□□□ -0.61
SMG6-217ENST00000575338 PABPN1Q86U42 306 aaKnown RBP eCLIP11.23□□□□□ -0.61
SMG6-217ENST00000575338 EIF4G1Q04637 1599 aaKnown RBP11.19□□□□□ -0.62
SMG6-217ENST00000575338 TRIM41Q8WV44 630 aa11.16□□□□□ -0.62
SMG6-217ENST00000575338 CCDC88BA6NC98 1476 aa11.16□□□□□ -0.62
SMG6-217ENST00000575338 BAZ1BQ9UIG0 1483 aaKnown RBP11.16□□□□□ -0.62
SMG6-217ENST00000575338 ATAD2BQ9ULI0 1458 aa11.16□□□□□ -0.62
SMG6-217ENST00000575338 HMGXB3Q12766 1538 aa11.13□□□□□ -0.63
SMG6-217ENST00000575338 NCAPD3P42695 1498 aa11.06□□□□□ -0.64
SMG6-217ENST00000575338 PRDM2Q13029 1718 aa11.01□□□□□ -0.65
SMG6-217ENST00000575338 EEA1Q15075 1411 aa11□□□□□ -0.65
SMG6-217ENST00000575338 DNAJC5BQ9UF47 199 aa10.98□□□□□ -0.65
SMG6-217ENST00000575338 ABCC8Q09428 1581 aa10.97□□□□□ -0.65
SMG6-217ENST00000575338 WRNQ14191 1432 aaPredicted RBP eCLIP10.94□□□□□ -0.66
SMG6-217ENST00000575338 CC2D2AQ9P2K1 1620 aa10.91□□□□□ -0.66
SMG6-217ENST00000575338 BIVM-ERCC5R4GMW8 1640 aa10.89□□□□□ -0.67
SMG6-217ENST00000575338 LOC105371045A0A1W2PR82 267 aa10.88□□□□□ -0.67
SMG6-217ENST00000575338 TOP2BQ02880 1626 aa10.87□□□□□ -0.67
SMG6-217ENST00000575338 CFTRP13569 1480 aa10.86□□□□□ -0.67
SMG6-217ENST00000575338 SYNJ1O43426 1573 aa10.86□□□□□ -0.67
SMG6-217ENST00000575338 FAM9AQ8IZU1 332 aaPredicted RBP10.84□□□□□ -0.67
SMG6-217ENST00000575338 KIF21BO75037 1637 aa10.81□□□□□ -0.68
SMG6-217ENST00000575338 GOLGA3Q08378 1498 aa10.79□□□□□ -0.68
SMG6-217ENST00000575338 CSRNP3Q8WYN3 585 aa10.78□□□□□ -0.68
SMG6-217ENST00000575338 CADPSQ9ULU8 1353 aa10.77□□□□□ -0.68
SMG6-217ENST00000575338 CEP164Q9UPV0 1460 aa10.77□□□□□ -0.69
SMG6-217ENST00000575338 SOGA1O94964 1423 aa10.76□□□□□ -0.69
SMG6-217ENST00000575338 TNIKQ9UKE5 1360 aa10.76□□□□□ -0.69
SMG6-217ENST00000575338 LAMC3Q9Y6N6 1575 aa10.74□□□□□ -0.69
SMG6-217ENST00000575338 TRIM26Q12899 539 aaPredicted RBP10.73□□□□□ -0.69
SMG6-217ENST00000575338 CUX1P39880 1505 aa10.72□□□□□ -0.69
SMG6-217ENST00000575338 ERICH3Q5RHP9 1530 aa10.71□□□□□ -0.69
SMG6-217ENST00000575338 KIF27Q86VH2 1401 aa10.69□□□□□ -0.7
SMG6-217ENST00000575338 RUSC2Q8N2Y8 1516 aa10.68□□□□□ -0.7
SMG6-217ENST00000575338 CEP162Q5TB80 1403 aa10.67□□□□□ -0.7
SMG6-217ENST00000575338 DNMBPQ6XZF7 1577 aa10.66□□□□□ -0.7
SMG6-217ENST00000575338 UBTFP17480 764 aaKnown RBP10.66□□□□□ -0.7
SMG6-217ENST00000575338 PCGF6Q9BYE7 350 aa10.66□□□□□ -0.7
SMG6-217ENST00000575338 FANCD2Q9BXW9 1451 aa10.66□□□□□ -0.7
SMG6-217ENST00000575338 PDS5BQ9NTI5 1447 aa10.61□□□□□ -0.71
SMG6-217ENST00000575338 EHMT2Q96KQ7 1210 aa10.61□□□□□ -0.71
SMG6-217ENST00000575338 PRXQ9BXM0 1461 aa10.61□□□□□ -0.71
SMG6-217ENST00000575338 FGD5Q6ZNL6 1462 aa10.6□□□□□ -0.71
SMG6-217ENST00000575338 RAPGEF2Q9Y4G8 1499 aa10.57□□□□□ -0.72
SMG6-217ENST00000575338 TOPBP1Q92547 1522 aa10.57□□□□□ -0.72
SMG6-217ENST00000575338 CLIP1P30622 1438 aa10.57□□□□□ -0.72
SMG6-217ENST00000575338 CUL7Q14999 1698 aa10.57□□□□□ -0.72
SMG6-217ENST00000575338 CUX2O14529 1486 aa10.56□□□□□ -0.72
SMG6-217ENST00000575338 HRCP23327 699 aa10.55□□□□□ -0.72
SMG6-217ENST00000575338 ABCA10Q8WWZ4 1543 aa10.54□□□□□ -0.72
SMG6-217ENST00000575338 KIF21AQ7Z4S6 1674 aa10.54□□□□□ -0.72
SMG6-217ENST00000575338 WDR97A6NE52 1622 aa10.54□□□□□ -0.72
SMG6-217ENST00000575338 VPS8Q8N3P4 1428 aa10.52□□□□□ -0.73
SMG6-217ENST00000575338 NESP48681 1621 aa10.52□□□□□ -0.73
SMG6-217ENST00000575338 POLA1P09884 1462 aaPredicted RBP10.51□□□□□ -0.73
SMG6-217ENST00000575338 ZEB1P37275 1124 aaPredicted RBP10.51□□□□□ -0.73
SMG6-217ENST00000575338 APLP2Q06481 763 aa10.5□□□□□ -0.73
SMG6-217ENST00000575338 CTTNBP2Q8WZ74 1663 aa10.48□□□□□ -0.73
SMG6-217ENST00000575338 IGF1RP08069 1367 aa10.47□□□□□ -0.73
SMG6-217ENST00000575338 CARMIL1Q5VZK9 1371 aa10.47□□□□□ -0.73
SMG6-217ENST00000575338 URB2Q14146 1524 aaKnown RBP10.47□□□□□ -0.73
SMG6-217ENST00000575338 ABCA5Q8WWZ7 1642 aa10.46□□□□□ -0.74
SMG6-217ENST00000575338 MRC2Q9UBG0 1479 aa10.44□□□□□ -0.74
SMG6-217ENST00000575338 EFCAB5A4FU69 1503 aa10.43□□□□□ -0.74
SMG6-217ENST00000575338 RAD54L2Q9Y4B4 1467 aa10.42□□□□□ -0.74
SMG6-217ENST00000575338 PBRM1Q86U86 1689 aa10.41□□□□□ -0.74
SMG6-217ENST00000575338 TARBP1Q13395 1621 aaKnown RBP10.4□□□□□ -0.74
SMG6-217ENST00000575338 GAPVD1Q14C86 1478 aa10.4□□□□□ -0.74
SMG6-217ENST00000575338 ARAP1Q96P48 1450 aa10.4□□□□□ -0.74
SMG6-217ENST00000575338 FHAD1B1AJZ9 1412 aa10.39□□□□□ -0.75
SMG6-217ENST00000575338 WDR62O43379 1518 aa10.38□□□□□ -0.75
SMG6-217ENST00000575338 MAP3K1Q13233 1512 aa10.38□□□□□ -0.75
SMG6-217ENST00000575338 ARHGAP35Q9NRY4 1499 aa10.37□□□□□ -0.75
SMG6-217ENST00000575338 IFT140Q96RY7 1462 aa10.36□□□□□ -0.75
SMG6-217ENST00000575338 PPARGC1BQ86YN6 1023 aaKnown RBP10.33□□□□□ -0.76
SMG6-217ENST00000575338 ERCC6Q03468 1493 aa10.33□□□□□ -0.76
SMG6-217ENST00000575338 CFAP43Q8NDM7 1665 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms