RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 NISCHQ9Y2I1 1504 aa26.42■■□□□ 1.82
CHD3-216ENST00000573936 ABCC9O60706 1549 aa23.64■■□□□ 1.37
CHD3-216ENST00000573936 CCDC180Q9P1Z9 1646 aa23.62■■□□□ 1.37
CHD3-216ENST00000573936 RB1CC1Q8TDY2 1594 aa22.47■■□□□ 1.19
CHD3-216ENST00000573936 DNAJC5BQ9UF47 199 aa22.31■■□□□ 1.16
CHD3-216ENST00000573936 NACADO15069 1562 aa22.29■■□□□ 1.16
CHD3-216ENST00000573936 DCAF8L2P0C7V8 631 aa22.14■■□□□ 1.13
CHD3-216ENST00000573936 ZCCHC6Q5VYS8 1495 aaKnown RBP22.02■■□□□ 1.12
CHD3-216ENST00000573936 UNC13AQ9UPW8 1703 aa22■■□□□ 1.11
CHD3-216ENST00000573936 MYO15BQ96JP2 1530 aa21.96■■□□□ 1.11
CHD3-216ENST00000573936 PABPN1Q86U42 306 aaKnown RBP eCLIP21.96■■□□□ 1.11
CHD3-216ENST00000573936 DCAF1Q9Y4B6 1507 aa21.9■■□□□ 1.1
CHD3-216ENST00000573936 BICRAQ9NZM4 1560 aa21.83■■□□□ 1.09
CHD3-216ENST00000573936 SCRIBQ14160 1630 aa21.56■■□□□ 1.04
CHD3-216ENST00000573936 SHROOM4Q9ULL8 1493 aa21.51■■□□□ 1.03
CHD3-216ENST00000573936 CC2D2AQ9P2K1 1620 aa21.35■■□□□ 1.01
CHD3-216ENST00000573936 EIF4G1Q04637 1599 aaKnown RBP21.3■■□□□ 1
CHD3-216ENST00000573936 CECR2Q9BXF3 1484 aa21.27■■□□□ 1
CHD3-216ENST00000573936 DNAJC5Q9H3Z4 198 aa20.95■□□□□ 0.94
CHD3-216ENST00000573936 NCAPD3P42695 1498 aa20.55■□□□□ 0.88
CHD3-216ENST00000573936 SMARCA4P51532 1647 aa20.53■□□□□ 0.88
CHD3-216ENST00000573936 ATAD2BQ9ULI0 1458 aa20.52■□□□□ 0.88
CHD3-216ENST00000573936 BAZ1AQ9NRL2 1556 aaPredicted RBP20.49■□□□□ 0.87
CHD3-216ENST00000573936 SMARCA2P51531 1590 aa20.48■□□□□ 0.87
CHD3-216ENST00000573936 HMGXB3Q12766 1538 aa20.46■□□□□ 0.87
CHD3-216ENST00000573936 ERCC6Q03468 1493 aa20.43■□□□□ 0.86
CHD3-216ENST00000573936 CUX2O14529 1486 aa20.4■□□□□ 0.86
CHD3-216ENST00000573936 BAZ1BQ9UIG0 1483 aaKnown RBP20.35■□□□□ 0.85
CHD3-216ENST00000573936 MROH2BQ7Z745 1585 aa20.34■□□□□ 0.85
CHD3-216ENST00000573936 NESP48681 1621 aa20.31■□□□□ 0.84
CHD3-216ENST00000573936 PEG3Q9GZU2 1588 aa20.29■□□□□ 0.84
CHD3-216ENST00000573936 RSF1Q96T23 1441 aaPredicted RBP20.18■□□□□ 0.82
CHD3-216ENST00000573936 LAMC3Q9Y6N6 1575 aa20.14■□□□□ 0.81
CHD3-216ENST00000573936 THOC2Q8NI27 1593 aaKnown RBP20.12■□□□□ 0.81
CHD3-216ENST00000573936 WIZO95785 1651 aa20.1■□□□□ 0.81
CHD3-216ENST00000573936 KIF21AQ7Z4S6 1674 aa20.07■□□□□ 0.8
CHD3-216ENST00000573936 PDS5BQ9NTI5 1447 aa19.99■□□□□ 0.79
CHD3-216ENST00000573936 TOP2AP11388 1531 aaKnown RBP19.94■□□□□ 0.78
CHD3-216ENST00000573936 CADPSQ9ULU8 1353 aa19.93■□□□□ 0.78
CHD3-216ENST00000573936 MRC2Q9UBG0 1479 aa19.86■□□□□ 0.77
CHD3-216ENST00000573936 TRIM41Q8WV44 630 aa19.84■□□□□ 0.77
CHD3-216ENST00000573936 WDR62O43379 1518 aa19.82■□□□□ 0.76
CHD3-216ENST00000573936 CEP164Q9UPV0 1460 aa19.79■□□□□ 0.76
CHD3-216ENST00000573936 SUPT5HO00267 1087 aaKnown RBP19.78■□□□□ 0.76
CHD3-216ENST00000573936 FANCD2Q9BXW9 1451 aa19.75■□□□□ 0.75
CHD3-216ENST00000573936 CFTRP13569 1480 aa19.72■□□□□ 0.75
CHD3-216ENST00000573936 CCDC88BA6NC98 1476 aa19.71■□□□□ 0.75
CHD3-216ENST00000573936 URB2Q14146 1524 aaKnown RBP19.6■□□□□ 0.73
CHD3-216ENST00000573936 PRDM2Q13029 1718 aa19.59■□□□□ 0.73
CHD3-216ENST00000573936 OSCARQ8IYS5 282 aa19.54■□□□□ 0.72
CHD3-216ENST00000573936 TOPBP1Q92547 1522 aa19.38■□□□□ 0.69
CHD3-216ENST00000573936 ZNF608Q9ULD9 1512 aaPredicted RBP19.36■□□□□ 0.69
CHD3-216ENST00000573936 IFT140Q96RY7 1462 aa19.36■□□□□ 0.69
CHD3-216ENST00000573936 DNMBPQ6XZF7 1577 aa19.32■□□□□ 0.68
CHD3-216ENST00000573936 EIF4G3O43432 1585 aaKnown RBP19.29■□□□□ 0.68
CHD3-216ENST00000573936 ABCC8Q09428 1581 aa19.27■□□□□ 0.68
CHD3-216ENST00000573936 TARBP1Q13395 1621 aaKnown RBP19.22■□□□□ 0.67
CHD3-216ENST00000573936 RIMBP3CA6NJZ7 1639 aa19.21■□□□□ 0.67
CHD3-216ENST00000573936 RIMBP3BA6NNM3 1639 aa19.21■□□□□ 0.67
CHD3-216ENST00000573936 RIMBP3Q9UFD9 1639 aa19.21■□□□□ 0.67
CHD3-216ENST00000573936 POLA1P09884 1462 aaPredicted RBP19.18■□□□□ 0.66
CHD3-216ENST00000573936 AQRO60306 1485 aaKnown RBP eCLIP19.16■□□□□ 0.667e-9■■■■■ 40.5
CHD3-216ENST00000573936 CHD1O14646 1710 aa19.15■□□□□ 0.66
CHD3-216ENST00000573936 ARHGEF11O15085 1522 aa19.14■□□□□ 0.65
CHD3-216ENST00000573936 RAD54L2Q9Y4B4 1467 aa19.1■□□□□ 0.65
CHD3-216ENST00000573936 CYB5RLQ6IPT4 315 aa19.1■□□□□ 0.65
CHD3-216ENST00000573936 CUX1P39880 1505 aa19.07■□□□□ 0.64
CHD3-216ENST00000573936 FGD5Q6ZNL6 1462 aa19.06■□□□□ 0.64
CHD3-216ENST00000573936 TRHP20396 242 aaPredicted RBP19.06■□□□□ 0.64
CHD3-216ENST00000573936 FBLN2P98095 1184 aa19.05■□□□□ 0.64
CHD3-216ENST00000573936 SOGA1O94964 1423 aa19.05■□□□□ 0.64
CHD3-216ENST00000573936 WRNQ14191 1432 aaPredicted RBP eCLIP19.04■□□□□ 0.64
CHD3-216ENST00000573936 TDRD9Q8NDG6 1382 aaKnown RBP19.04■□□□□ 0.64
CHD3-216ENST00000573936 SNAPC4Q5SXM2 1469 aa19.01■□□□□ 0.63
CHD3-216ENST00000573936 WDR97A6NE52 1622 aa19■□□□□ 0.63
CHD3-216ENST00000573936 ARAP1Q96P48 1450 aa18.96■□□□□ 0.63
CHD3-216ENST00000573936 TOP2BQ02880 1626 aa18.95■□□□□ 0.62
CHD3-216ENST00000573936 BIVM-ERCC5R4GMW8 1640 aa18.94■□□□□ 0.62
CHD3-216ENST00000573936 MAGI1Q96QZ7 1491 aaPredicted RBP18.92■□□□□ 0.62
CHD3-216ENST00000573936 SYNJ1O43426 1573 aa18.92■□□□□ 0.62
CHD3-216ENST00000573936 GRIN2BQ13224 1484 aa18.91■□□□□ 0.62
CHD3-216ENST00000573936 CLASP1Q7Z460 1538 aa18.9■□□□□ 0.62
CHD3-216ENST00000573936 PBRM1Q86U86 1689 aa18.9■□□□□ 0.62
CHD3-216ENST00000573936 SYNJ2O15056 1496 aa18.86■□□□□ 0.61
CHD3-216ENST00000573936 CHMP7Q8WUX9 453 aaPredicted RBP18.86■□□□□ 0.61
CHD3-216ENST00000573936 ABCA10Q8WWZ4 1543 aa18.85■□□□□ 0.61
CHD3-216ENST00000573936 GAPVD1Q14C86 1478 aa18.84■□□□□ 0.61
CHD3-216ENST00000573936 AEBP2Q6ZN18 517 aaPredicted RBP18.84■□□□□ 0.61
CHD3-216ENST00000573936 ABCA5Q8WWZ7 1642 aa18.84■□□□□ 0.61
CHD3-216ENST00000573936 ADAMTS12P58397 1594 aa18.72■□□□□ 0.59
CHD3-216ENST00000573936 GRIN2AQ12879 1464 aa18.69■□□□□ 0.58
CHD3-216ENST00000573936 KIF27Q86VH2 1401 aa18.66■□□□□ 0.58
CHD3-216ENST00000573936 CEP170Q5SW79 1584 aa18.64■□□□□ 0.58
CHD3-216ENST00000573936 ERICH3Q5RHP9 1530 aa18.64■□□□□ 0.57
CHD3-216ENST00000573936 ERCC6L2Q5T890 1561 aa18.62■□□□□ 0.57
CHD3-216ENST00000573936 NUP160Q12769 1436 aa18.61■□□□□ 0.57
CHD3-216ENST00000573936 FHAD1B1AJZ9 1412 aa18.59■□□□□ 0.57
CHD3-216ENST00000573936 IGF1RP08069 1367 aa18.55■□□□□ 0.56
CHD3-216ENST00000573936 SHROOM2Q13796 1616 aa18.55■□□□□ 0.56
CHD3-216ENST00000573936 CHIC1Q5VXU3 224 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 155.4 ms