RNA–Protein interactions for RNA: ENST00000573203.5

NDE1-207, Transcript of nudE neurodevelopment protein 1, humanhuman

TSL 3

Gene NDE1, Length 762 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1-207ENST00000573203 AEBP2Q6ZN18 517 aaPredicted RBP23.41■■□□□ 1.34
NDE1-207ENST00000573203 CHIC1Q5VXU3 224 aa22.67■■□□□ 1.22
NDE1-207ENST00000573203 NISCHQ9Y2I1 1504 aa22.21■■□□□ 1.15
NDE1-207ENST00000573203 SENP3Q9H4L4 574 aaPredicted RBP20.04■□□□□ 0.8
NDE1-207ENST00000573203 PHF23Q9BUL5 403 aaPredicted RBP19.84■□□□□ 0.77
NDE1-207ENST00000573203 CCDC180Q9P1Z9 1646 aa19.83■□□□□ 0.76
NDE1-207ENST00000573203 ABCC9O60706 1549 aa19.54■□□□□ 0.72
NDE1-207ENST00000573203 RB1CC1Q8TDY2 1594 aa18.74■□□□□ 0.59
NDE1-207ENST00000573203 DCAF8L2P0C7V8 631 aa18.67■□□□□ 0.58
NDE1-207ENST00000573203 NACADO15069 1562 aa18.67■□□□□ 0.58
NDE1-207ENST00000573203 FOXD1Q16676 465 aa18.54■□□□□ 0.56
NDE1-207ENST00000573203 MYO15BQ96JP2 1530 aa18.48■□□□□ 0.55
NDE1-207ENST00000573203 ZCCHC6Q5VYS8 1495 aaKnown RBP18.46■□□□□ 0.55
NDE1-207ENST00000573203 DCAF1Q9Y4B6 1507 aa18.35■□□□□ 0.53
NDE1-207ENST00000573203 UNC13AQ9UPW8 1703 aa18.33■□□□□ 0.52
NDE1-207ENST00000573203 PLPPR3Q6T4P5 718 aa18.31■□□□□ 0.52
NDE1-207ENST00000573203 PABPN1Q86U42 306 aaKnown RBP eCLIP18.24■□□□□ 0.51
NDE1-207ENST00000573203 BICRAQ9NZM4 1560 aa18.15■□□□□ 0.5
NDE1-207ENST00000573203 SCRIBQ14160 1630 aa18.09■□□□□ 0.49
NDE1-207ENST00000573203 DNAJC5BQ9UF47 199 aa18.04■□□□□ 0.48
NDE1-207ENST00000573203 SHROOM4Q9ULL8 1493 aa17.94■□□□□ 0.46
NDE1-207ENST00000573203 EIF4G1Q04637 1599 aaKnown RBP17.7■□□□□ 0.42
NDE1-207ENST00000573203 CC2D2AQ9P2K1 1620 aa17.67■□□□□ 0.42
NDE1-207ENST00000573203 PPP6R1Q9UPN7 881 aa17.57■□□□□ 0.4
NDE1-207ENST00000573203 CECR2Q9BXF3 1484 aa17.56■□□□□ 0.4
NDE1-207ENST00000573203 ADRA2BP18089 450 aa17.53■□□□□ 0.4
NDE1-207ENST00000573203 PIAS4Q8N2W9 510 aaPredicted RBP17.41■□□□□ 0.38
NDE1-207ENST00000573203 MSH5O43196 834 aa17.32■□□□□ 0.36
NDE1-207ENST00000573203 SMARCA4P51532 1647 aa17.29■□□□□ 0.36
NDE1-207ENST00000573203 BAZ1AQ9NRL2 1556 aaPredicted RBP17.23■□□□□ 0.35
NDE1-207ENST00000573203 NCAPD3P42695 1498 aa17.2■□□□□ 0.34
NDE1-207ENST00000573203 ATAD2BQ9ULI0 1458 aa17.2■□□□□ 0.34
NDE1-207ENST00000573203 SMARCA2P51531 1590 aa17.19■□□□□ 0.34
NDE1-207ENST00000573203 HMGXB3Q12766 1538 aa17.12■□□□□ 0.33
NDE1-207ENST00000573203 MROH2BQ7Z745 1585 aa17.11■□□□□ 0.33
NDE1-207ENST00000573203 PEG3Q9GZU2 1588 aa17.08■□□□□ 0.32
NDE1-207ENST00000573203 BAZ1BQ9UIG0 1483 aaKnown RBP17.07■□□□□ 0.32
NDE1-207ENST00000573203 WIZO95785 1651 aa16.94■□□□□ 0.3
NDE1-207ENST00000573203 ERCC6Q03468 1493 aa16.87■□□□□ 0.29
NDE1-207ENST00000573203 NESP48681 1621 aa16.86■□□□□ 0.29
NDE1-207ENST00000573203 RSF1Q96T23 1441 aaPredicted RBP16.86■□□□□ 0.29
NDE1-207ENST00000573203 LAMC3Q9Y6N6 1575 aa16.81■□□□□ 0.28
NDE1-207ENST00000573203 TOP2AP11388 1531 aaKnown RBP16.74■□□□□ 0.27
NDE1-207ENST00000573203 CUX2O14529 1486 aa16.73■□□□□ 0.27
NDE1-207ENST00000573203 CADPSQ9ULU8 1353 aa16.71■□□□□ 0.27
NDE1-207ENST00000573203 PDS5BQ9NTI5 1447 aa16.7■□□□□ 0.26
NDE1-207ENST00000573203 KIF21AQ7Z4S6 1674 aa16.69■□□□□ 0.26
NDE1-207ENST00000573203 THOC2Q8NI27 1593 aaKnown RBP16.64■□□□□ 0.25
NDE1-207ENST00000573203 CFTRP13569 1480 aa16.57■□□□□ 0.24
NDE1-207ENST00000573203 CCDC88BA6NC98 1476 aa16.54■□□□□ 0.24
NDE1-207ENST00000573203 FANCD2Q9BXW9 1451 aa16.53■□□□□ 0.24
NDE1-207ENST00000573203 MRC2Q9UBG0 1479 aa16.53■□□□□ 0.24
NDE1-207ENST00000573203 CEP164Q9UPV0 1460 aa16.53■□□□□ 0.24
NDE1-207ENST00000573203 PRDM2Q13029 1718 aa16.49■□□□□ 0.23
NDE1-207ENST00000573203 WDR62O43379 1518 aa16.47■□□□□ 0.23
NDE1-207ENST00000573203 URB2Q14146 1524 aaKnown RBP16.37■□□□□ 0.21
NDE1-207ENST00000573203 DNAJC5Q9H3Z4 198 aa16.37■□□□□ 0.21
NDE1-207ENST00000573203 SUPT5HO00267 1087 aaKnown RBP16.36■□□□□ 0.21
NDE1-207ENST00000573203 TOPBP1Q92547 1522 aa16.24■□□□□ 0.19
NDE1-207ENST00000573203 ABCC8Q09428 1581 aa16.24■□□□□ 0.19
NDE1-207ENST00000573203 DNMBPQ6XZF7 1577 aa16.22■□□□□ 0.19
NDE1-207ENST00000573203 SCAF1Q9H7N4 1312 aaKnown RBP16.2■□□□□ 0.18
NDE1-207ENST00000573203 IFT140Q96RY7 1462 aa16.18■□□□□ 0.18
NDE1-207ENST00000573203 POTEDQ86YR6 584 aa16.17■□□□□ 0.18
NDE1-207ENST00000573203 ZNF608Q9ULD9 1512 aaPredicted RBP16.11■□□□□ 0.17
NDE1-207ENST00000573203 POLA1P09884 1462 aaPredicted RBP16.1■□□□□ 0.17
NDE1-207ENST00000573203 TARBP1Q13395 1621 aaKnown RBP16.08■□□□□ 0.16
NDE1-207ENST00000573203 CUX1P39880 1505 aa16.07■□□□□ 0.16
NDE1-207ENST00000573203 EIF4G3O43432 1585 aaKnown RBP16.06■□□□□ 0.16
NDE1-207ENST00000573203 FGD5Q6ZNL6 1462 aa16.04■□□□□ 0.16
NDE1-207ENST00000573203 PPP4R3CPQ6ZMV5 832 aa16.04■□□□□ 0.16
NDE1-207ENST00000573203 RAD54L2Q9Y4B4 1467 aa16.03■□□□□ 0.16
NDE1-207ENST00000573203 SOGA1O94964 1423 aa16.03■□□□□ 0.16
NDE1-207ENST00000573203 OSCARQ8IYS5 282 aa16.01■□□□□ 0.15
NDE1-207ENST00000573203 AQRO60306 1485 aaKnown RBP eCLIP16.01■□□□□ 0.151e-6■■□□□ 11.7
NDE1-207ENST00000573203 MAPK8IP2Q13387 824 aaPredicted RBP15.96■□□□□ 0.15
NDE1-207ENST00000573203 TDRD9Q8NDG6 1382 aaKnown RBP15.96■□□□□ 0.15
NDE1-207ENST00000573203 WDR97A6NE52 1622 aa15.95■□□□□ 0.14
NDE1-207ENST00000573203 DMRT2Q9Y5R5 561 aa15.93■□□□□ 0.14
NDE1-207ENST00000573203 CHD1O14646 1710 aa15.91■□□□□ 0.14
NDE1-207ENST00000573203 WRNQ14191 1432 aaPredicted RBP eCLIP15.91■□□□□ 0.14
NDE1-207ENST00000573203 BIVM-ERCC5R4GMW8 1640 aa15.9■□□□□ 0.14
NDE1-207ENST00000573203 TOP2BQ02880 1626 aa15.9■□□□□ 0.14
NDE1-207ENST00000573203 SYNJ1O43426 1573 aa15.89■□□□□ 0.13
NDE1-207ENST00000573203 FBLN2P98095 1184 aa15.88■□□□□ 0.13
NDE1-207ENST00000573203 SNAPC4Q5SXM2 1469 aa15.87■□□□□ 0.13
NDE1-207ENST00000573203 ABCA10Q8WWZ4 1543 aa15.87■□□□□ 0.13
NDE1-207ENST00000573203 GRIN2BQ13224 1484 aa15.86■□□□□ 0.13
NDE1-207ENST00000573203 PBRM1Q86U86 1689 aa15.86■□□□□ 0.13
NDE1-207ENST00000573203 GAPVD1Q14C86 1478 aa15.85■□□□□ 0.13
NDE1-207ENST00000573203 MAGI1Q96QZ7 1491 aaPredicted RBP15.84■□□□□ 0.13
NDE1-207ENST00000573203 ABCA5Q8WWZ7 1642 aa15.83■□□□□ 0.12
NDE1-207ENST00000573203 TRIM41Q8WV44 630 aa15.81■□□□□ 0.12
NDE1-207ENST00000573203 CHMP7Q8WUX9 453 aaPredicted RBP15.8■□□□□ 0.12
NDE1-207ENST00000573203 RIMBP3CA6NJZ7 1639 aa15.78■□□□□ 0.12
NDE1-207ENST00000573203 RIMBP3BA6NNM3 1639 aa15.78■□□□□ 0.12
NDE1-207ENST00000573203 RIMBP3Q9UFD9 1639 aa15.78■□□□□ 0.12
NDE1-207ENST00000573203 SYNJ2O15056 1496 aa15.77■□□□□ 0.11
NDE1-207ENST00000573203 ARHGEF11O15085 1522 aa15.74■□□□□ 0.11
NDE1-207ENST00000573203 CNKSR2Q8WXI2 1034 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms