RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 NISCHQ9Y2I1 1504 aa17.1■□□□□ 0.33
VPS53-213ENST00000572334 CCDC180Q9P1Z9 1646 aa15.35■□□□□ 0.05
VPS53-213ENST00000572334 ABCC9O60706 1549 aa15.31■□□□□ 0.04
VPS53-213ENST00000572334 RB1CC1Q8TDY2 1594 aa14.56□□□□□ -0.08
VPS53-213ENST00000572334 NACADO15069 1562 aa14.48□□□□□ -0.09
VPS53-213ENST00000572334 DNAJC5BQ9UF47 199 aa14.41□□□□□ -0.1
VPS53-213ENST00000572334 UNC13AQ9UPW8 1703 aa14.38□□□□□ -0.11
VPS53-213ENST00000572334 MYO15BQ96JP2 1530 aa14.3□□□□□ -0.12
VPS53-213ENST00000572334 DCAF8L2P0C7V8 631 aa14.29□□□□□ -0.12
VPS53-213ENST00000572334 BICRAQ9NZM4 1560 aa14.23□□□□□ -0.13
VPS53-213ENST00000572334 PABPN1Q86U42 306 aaKnown RBP eCLIP14.23□□□□□ -0.13
VPS53-213ENST00000572334 ZCCHC6Q5VYS8 1495 aaKnown RBP14.18□□□□□ -0.14
VPS53-213ENST00000572334 DCAF1Q9Y4B6 1507 aa14.12□□□□□ -0.15
VPS53-213ENST00000572334 AEBP2Q6ZN18 517 aaPredicted RBP13.97□□□□□ -0.17
VPS53-213ENST00000572334 SCRIBQ14160 1630 aa13.97□□□□□ -0.17
VPS53-213ENST00000572334 SHROOM4Q9ULL8 1493 aa13.94□□□□□ -0.18
VPS53-213ENST00000572334 CC2D2AQ9P2K1 1620 aa13.86□□□□□ -0.19
VPS53-213ENST00000572334 EIF4G1Q04637 1599 aaKnown RBP13.83□□□□□ -0.2
VPS53-213ENST00000572334 CECR2Q9BXF3 1484 aa13.78□□□□□ -0.2
VPS53-213ENST00000572334 NCAPD3P42695 1498 aa13.37□□□□□ -0.27
VPS53-213ENST00000572334 SMARCA4P51532 1647 aa13.35□□□□□ -0.27
VPS53-213ENST00000572334 ATAD2BQ9ULI0 1458 aa13.34□□□□□ -0.27
VPS53-213ENST00000572334 HMGXB3Q12766 1538 aa13.29□□□□□ -0.28
VPS53-213ENST00000572334 SMARCA2P51531 1590 aa13.28□□□□□ -0.28
VPS53-213ENST00000572334 BAZ1AQ9NRL2 1556 aaPredicted RBP13.24□□□□□ -0.29
VPS53-213ENST00000572334 PEG3Q9GZU2 1588 aa13.24□□□□□ -0.29
VPS53-213ENST00000572334 NESP48681 1621 aa13.19□□□□□ -0.3
VPS53-213ENST00000572334 MROH2BQ7Z745 1585 aa13.19□□□□□ -0.3
VPS53-213ENST00000572334 CUX2O14529 1486 aa13.18□□□□□ -0.3
VPS53-213ENST00000572334 DNAJC5Q9H3Z4 198 aa13.17□□□□□ -0.3
VPS53-213ENST00000572334 BAZ1BQ9UIG0 1483 aaKnown RBP13.16□□□□□ -0.3
VPS53-213ENST00000572334 ERCC6Q03468 1493 aa13.16□□□□□ -0.3
VPS53-213ENST00000572334 CHIC1Q5VXU3 224 aa13.12□□□□□ -0.31
VPS53-213ENST00000572334 THOC2Q8NI27 1593 aaKnown RBP13.08□□□□□ -0.32
VPS53-213ENST00000572334 LAMC3Q9Y6N6 1575 aa13.07□□□□□ -0.32
VPS53-213ENST00000572334 KIF21AQ7Z4S6 1674 aa13.05□□□□□ -0.32
VPS53-213ENST00000572334 WIZO95785 1651 aa13.05□□□□□ -0.32
VPS53-213ENST00000572334 CADPSQ9ULU8 1353 aa12.94□□□□□ -0.34
VPS53-213ENST00000572334 PDS5BQ9NTI5 1447 aa12.94□□□□□ -0.34
VPS53-213ENST00000572334 RSF1Q96T23 1441 aaPredicted RBP12.89□□□□□ -0.35
VPS53-213ENST00000572334 WDR62O43379 1518 aa12.87□□□□□ -0.35
VPS53-213ENST00000572334 MRC2Q9UBG0 1479 aa12.86□□□□□ -0.35
VPS53-213ENST00000572334 TOP2AP11388 1531 aaKnown RBP12.84□□□□□ -0.35
VPS53-213ENST00000572334 CFTRP13569 1480 aa12.82□□□□□ -0.36
VPS53-213ENST00000572334 FANCD2Q9BXW9 1451 aa12.8□□□□□ -0.36
VPS53-213ENST00000572334 CEP164Q9UPV0 1460 aa12.79□□□□□ -0.36
VPS53-213ENST00000572334 PRDM2Q13029 1718 aa12.77□□□□□ -0.36
VPS53-213ENST00000572334 URB2Q14146 1524 aaKnown RBP12.73□□□□□ -0.37
VPS53-213ENST00000572334 CCDC88BA6NC98 1476 aa12.7□□□□□ -0.38
VPS53-213ENST00000572334 TOPBP1Q92547 1522 aa12.58□□□□□ -0.4
VPS53-213ENST00000572334 ZNF608Q9ULD9 1512 aaPredicted RBP12.57□□□□□ -0.4
VPS53-213ENST00000572334 IFT140Q96RY7 1462 aa12.54□□□□□ -0.4
VPS53-213ENST00000572334 DNMBPQ6XZF7 1577 aa12.53□□□□□ -0.4
VPS53-213ENST00000572334 OSCARQ8IYS5 282 aa12.53□□□□□ -0.4
VPS53-213ENST00000572334 TRIM41Q8WV44 630 aa12.53□□□□□ -0.4
VPS53-213ENST00000572334 TARBP1Q13395 1621 aaKnown RBP12.51□□□□□ -0.41
VPS53-213ENST00000572334 EIF4G3O43432 1585 aaKnown RBP12.51□□□□□ -0.41
VPS53-213ENST00000572334 ABCC8Q09428 1581 aa12.5□□□□□ -0.41
VPS53-213ENST00000572334 RIMBP3CA6NJZ7 1639 aa12.46□□□□□ -0.41
VPS53-213ENST00000572334 RIMBP3BA6NNM3 1639 aa12.46□□□□□ -0.41
VPS53-213ENST00000572334 RIMBP3Q9UFD9 1639 aa12.46□□□□□ -0.41
VPS53-213ENST00000572334 POLA1P09884 1462 aaPredicted RBP12.46□□□□□ -0.42
VPS53-213ENST00000572334 CHD1O14646 1710 aa12.45□□□□□ -0.42
VPS53-213ENST00000572334 AQRO60306 1485 aaKnown RBP eCLIP12.44□□□□□ -0.42
VPS53-213ENST00000572334 RAD54L2Q9Y4B4 1467 aa12.41□□□□□ -0.42
VPS53-213ENST00000572334 ARHGEF11O15085 1522 aa12.4□□□□□ -0.42
VPS53-213ENST00000572334 CUX1P39880 1505 aa12.38□□□□□ -0.43
VPS53-213ENST00000572334 FGD5Q6ZNL6 1462 aa12.36□□□□□ -0.43
VPS53-213ENST00000572334 SOGA1O94964 1423 aa12.36□□□□□ -0.43
VPS53-213ENST00000572334 WDR97A6NE52 1622 aa12.35□□□□□ -0.43
VPS53-213ENST00000572334 TDRD9Q8NDG6 1382 aaKnown RBP12.34□□□□□ -0.43
VPS53-213ENST00000572334 SNAPC4Q5SXM2 1469 aa12.3□□□□□ -0.44
VPS53-213ENST00000572334 ARAP1Q96P48 1450 aa12.29□□□□□ -0.44
VPS53-213ENST00000572334 CLASP1Q7Z460 1538 aa12.28□□□□□ -0.44
VPS53-213ENST00000572334 PBRM1Q86U86 1689 aa12.28□□□□□ -0.44
VPS53-213ENST00000572334 FBLN2P98095 1184 aa12.26□□□□□ -0.45
VPS53-213ENST00000572334 MAGI1Q96QZ7 1491 aaPredicted RBP12.26□□□□□ -0.45
VPS53-213ENST00000572334 CYB5RLQ6IPT4 315 aa12.25□□□□□ -0.45
VPS53-213ENST00000572334 GRIN2BQ13224 1484 aa12.25□□□□□ -0.45
VPS53-213ENST00000572334 ABCA5Q8WWZ7 1642 aa12.25□□□□□ -0.45
VPS53-213ENST00000572334 SUPT5HO00267 1087 aaKnown RBP12.24□□□□□ -0.45
VPS53-213ENST00000572334 ABCA10Q8WWZ4 1543 aa12.23□□□□□ -0.45
VPS53-213ENST00000572334 SYNJ2O15056 1496 aa12.22□□□□□ -0.45
VPS53-213ENST00000572334 SYNJ1O43426 1573 aa12.22□□□□□ -0.45
VPS53-213ENST00000572334 GAPVD1Q14C86 1478 aa12.21□□□□□ -0.45
VPS53-213ENST00000572334 BIVM-ERCC5R4GMW8 1640 aa12.2□□□□□ -0.46
VPS53-213ENST00000572334 TOP2BQ02880 1626 aa12.19□□□□□ -0.46
VPS53-213ENST00000572334 CHMP7Q8WUX9 453 aaPredicted RBP12.18□□□□□ -0.46
VPS53-213ENST00000572334 ADAMTS12P58397 1594 aa12.14□□□□□ -0.47
VPS53-213ENST00000572334 WRNQ14191 1432 aaPredicted RBP eCLIP12.13□□□□□ -0.47
VPS53-213ENST00000572334 CEP170Q5SW79 1584 aa12.12□□□□□ -0.47
VPS53-213ENST00000572334 ERCC6L2Q5T890 1561 aa12.12□□□□□ -0.47
VPS53-213ENST00000572334 GRIN2AQ12879 1464 aa12.11□□□□□ -0.47
VPS53-213ENST00000572334 NUP160Q12769 1436 aa12.09□□□□□ -0.47
VPS53-213ENST00000572334 SHROOM2Q13796 1616 aa12.08□□□□□ -0.48
VPS53-213ENST00000572334 ERICH3Q5RHP9 1530 aa12.06□□□□□ -0.48
VPS53-213ENST00000572334 TRHP20396 242 aaPredicted RBP12.06□□□□□ -0.48
VPS53-213ENST00000572334 SENP3Q9H4L4 574 aaPredicted RBP12.06□□□□□ -0.48
VPS53-213ENST00000572334 FHAD1B1AJZ9 1412 aa12.05□□□□□ -0.48
VPS53-213ENST00000572334 RUSC2Q8N2Y8 1516 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 123.5 ms