RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 NISCHQ9Y2I1 1504 aa33.78■■■■□ 3
CCDC40-208ENST00000572270 ABCC9O60706 1549 aa31.52■■■□□ 2.64
CCDC40-208ENST00000572270 CCDC180Q9P1Z9 1646 aa30.75■■■□□ 2.51
CCDC40-208ENST00000572270 DNAJC5BQ9UF47 199 aa30.2■■■□□ 2.43
CCDC40-208ENST00000572270 RB1CC1Q8TDY2 1594 aa29.68■■■□□ 2.34
CCDC40-208ENST00000572270 NACADO15069 1562 aa29.25■■■□□ 2.27
CCDC40-208ENST00000572270 PABPN1Q86U42 306 aaKnown RBP eCLIP29.17■■■□□ 2.26
CCDC40-208ENST00000572270 UNC13AQ9UPW8 1703 aa28.98■■■□□ 2.23
CCDC40-208ENST00000572270 DCAF8L2P0C7V8 631 aa28.9■■■□□ 2.22
CCDC40-208ENST00000572270 BICRAQ9NZM4 1560 aa28.76■■■□□ 2.19
CCDC40-208ENST00000572270 MYO15BQ96JP2 1530 aa28.53■■■□□ 2.16
CCDC40-208ENST00000572270 CECR2Q9BXF3 1484 aa28.49■■■□□ 2.15
CCDC40-208ENST00000572270 CC2D2AQ9P2K1 1620 aa28.44■■■□□ 2.14
CCDC40-208ENST00000572270 DNAJC5Q9H3Z4 198 aa28.41■■■□□ 2.14
CCDC40-208ENST00000572270 SHROOM4Q9ULL8 1493 aa28.37■■■□□ 2.13
CCDC40-208ENST00000572270 EIF4G1Q04637 1599 aaKnown RBP28.17■■■□□ 2.1
CCDC40-208ENST00000572270 SCRIBQ14160 1630 aa27.95■■■□□ 2.06
CCDC40-208ENST00000572270 DCAF1Q9Y4B6 1507 aa27.86■■■□□ 2.05
CCDC40-208ENST00000572270 ZCCHC6Q5VYS8 1495 aaKnown RBP27.83■■■□□ 2.04
CCDC40-208ENST00000572270 CUX2O14529 1486 aa27.55■■■□□ 2
CCDC40-208ENST00000572270 ERCC6Q03468 1493 aa27.33■■□□□ 1.97
CCDC40-208ENST00000572270 NCAPD3P42695 1498 aa26.96■■□□□ 1.91
CCDC40-208ENST00000572270 TRIM41Q8WV44 630 aa26.89■■□□□ 1.9
CCDC40-208ENST00000572270 NESP48681 1621 aa26.81■■□□□ 1.88
CCDC40-208ENST00000572270 ATAD2BQ9ULI0 1458 aa26.77■■□□□ 1.88
CCDC40-208ENST00000572270 THOC2Q8NI27 1593 aaKnown RBP26.75■■□□□ 1.87
CCDC40-208ENST00000572270 HMGXB3Q12766 1538 aa26.73■■□□□ 1.87
CCDC40-208ENST00000572270 SMARCA2P51531 1590 aa26.7■■□□□ 1.86
CCDC40-208ENST00000572270 SMARCA4P51532 1647 aa26.56■■□□□ 1.84
CCDC40-208ENST00000572270 LAMC3Q9Y6N6 1575 aa26.55■■□□□ 1.84
CCDC40-208ENST00000572270 BAZ1BQ9UIG0 1483 aaKnown RBP26.51■■□□□ 1.83
CCDC40-208ENST00000572270 KIF21AQ7Z4S6 1674 aa26.5■■□□□ 1.83
CCDC40-208ENST00000572270 PDS5BQ9NTI5 1447 aa26.42■■□□□ 1.82
CCDC40-208ENST00000572270 BAZ1AQ9NRL2 1556 aaPredicted RBP26.32■■□□□ 1.8
CCDC40-208ENST00000572270 PEG3Q9GZU2 1588 aa26.29■■□□□ 1.8
CCDC40-208ENST00000572270 MRC2Q9UBG0 1479 aa26.23■■□□□ 1.79
CCDC40-208ENST00000572270 WDR62O43379 1518 aa26.19■■□□□ 1.78
CCDC40-208ENST00000572270 CADPSQ9ULU8 1353 aa26.11■■□□□ 1.77
CCDC40-208ENST00000572270 OSCARQ8IYS5 282 aa26.11■■□□□ 1.77
CCDC40-208ENST00000572270 MROH2BQ7Z745 1585 aa26■■□□□ 1.75
CCDC40-208ENST00000572270 CEP164Q9UPV0 1460 aa25.98■■□□□ 1.75
CCDC40-208ENST00000572270 RIMBP3CA6NJZ7 1639 aa25.9■■□□□ 1.74
CCDC40-208ENST00000572270 RIMBP3BA6NNM3 1639 aa25.9■■□□□ 1.74
CCDC40-208ENST00000572270 RIMBP3Q9UFD9 1639 aa25.9■■□□□ 1.74
CCDC40-208ENST00000572270 FANCD2Q9BXW9 1451 aa25.85■■□□□ 1.73
CCDC40-208ENST00000572270 ARHGEF11O15085 1522 aa25.72■■□□□ 1.71
CCDC40-208ENST00000572270 WIZO95785 1651 aa25.68■■□□□ 1.7
CCDC40-208ENST00000572270 URB2Q14146 1524 aaKnown RBP25.66■■□□□ 1.7
CCDC40-208ENST00000572270 CFTRP13569 1480 aa25.64■■□□□ 1.69
CCDC40-208ENST00000572270 TRHP20396 242 aaPredicted RBP25.6■■□□□ 1.69
CCDC40-208ENST00000572270 CYB5RLQ6IPT4 315 aa25.55■■□□□ 1.68
CCDC40-208ENST00000572270 AEBP2Q6ZN18 517 aaPredicted RBP25.51■■□□□ 1.67
CCDC40-208ENST00000572270 ZNF608Q9ULD9 1512 aaPredicted RBP25.47■■□□□ 1.67
CCDC40-208ENST00000572270 IFT140Q96RY7 1462 aa25.47■■□□□ 1.67
CCDC40-208ENST00000572270 PRDM2Q13029 1718 aa25.4■■□□□ 1.66
CCDC40-208ENST00000572270 ARAP1Q96P48 1450 aa25.39■■□□□ 1.65
CCDC40-208ENST00000572270 EIF4G3O43432 1585 aaKnown RBP25.35■■□□□ 1.65
CCDC40-208ENST00000572270 CHD1O14646 1710 aa25.33■■□□□ 1.65
CCDC40-208ENST00000572270 TOP2AP11388 1531 aaKnown RBP25.32■■□□□ 1.64
CCDC40-208ENST00000572270 RSF1Q96T23 1441 aaPredicted RBP25.28■■□□□ 1.64
CCDC40-208ENST00000572270 TOPBP1Q92547 1522 aa25.25■■□□□ 1.63
CCDC40-208ENST00000572270 FBLN2P98095 1184 aa25.19■■□□□ 1.62
CCDC40-208ENST00000572270 ABCC8Q09428 1581 aa25.18■■□□□ 1.62
CCDC40-208ENST00000572270 AQRO60306 1485 aaKnown RBP eCLIP25.14■■□□□ 1.61
CCDC40-208ENST00000572270 DNMBPQ6XZF7 1577 aa25.11■■□□□ 1.61
CCDC40-208ENST00000572270 TARBP1Q13395 1621 aaKnown RBP25.08■■□□□ 1.61
CCDC40-208ENST00000572270 CCDC88BA6NC98 1476 aa24.99■■□□□ 1.59
CCDC40-208ENST00000572270 CLASP1Q7Z460 1538 aa24.98■■□□□ 1.59
CCDC40-208ENST00000572270 SYNJ1O43426 1573 aa24.95■■□□□ 1.58
CCDC40-208ENST00000572270 POLA1P09884 1462 aaPredicted RBP24.93■■□□□ 1.58
CCDC40-208ENST00000572270 SNAPC4Q5SXM2 1469 aa24.9■■□□□ 1.58
CCDC40-208ENST00000572270 CHMP7Q8WUX9 453 aaPredicted RBP24.86■■□□□ 1.57
CCDC40-208ENST00000572270 RAD54L2Q9Y4B4 1467 aa24.84■■□□□ 1.57
CCDC40-208ENST00000572270 TDRD9Q8NDG6 1382 aaKnown RBP24.84■■□□□ 1.57
CCDC40-208ENST00000572270 WDR97A6NE52 1622 aa24.83■■□□□ 1.57
CCDC40-208ENST00000572270 MAGI1Q96QZ7 1491 aaPredicted RBP24.81■■□□□ 1.56
CCDC40-208ENST00000572270 SOGA1O94964 1423 aa24.8■■□□□ 1.56
CCDC40-208ENST00000572270 GAPVD1Q14C86 1478 aa24.79■■□□□ 1.56
CCDC40-208ENST00000572270 SYNJ2O15056 1496 aa24.72■■□□□ 1.55
CCDC40-208ENST00000572270 GRIN2BQ13224 1484 aa24.7■■□□□ 1.55
CCDC40-208ENST00000572270 FGD5Q6ZNL6 1462 aa24.67■■□□□ 1.54
CCDC40-208ENST00000572270 PBRM1Q86U86 1689 aa24.6■■□□□ 1.53
CCDC40-208ENST00000572270 CUX1P39880 1505 aa24.5■■□□□ 1.51
CCDC40-208ENST00000572270 ERCC6L2Q5T890 1561 aa24.5■■□□□ 1.51
CCDC40-208ENST00000572270 KIF13AQ9H1H9 1805 aa24.49■■□□□ 1.51
CCDC40-208ENST00000572270 CEP170Q5SW79 1584 aa24.42■■□□□ 1.5
CCDC40-208ENST00000572270 ILDR1Q86SU0 546 aaPredicted RBP24.42■■□□□ 1.5
CCDC40-208ENST00000572270 ABCA5Q8WWZ7 1642 aa24.39■■□□□ 1.5
CCDC40-208ENST00000572270 GRIN2AQ12879 1464 aa24.39■■□□□ 1.5
CCDC40-208ENST00000572270 ABCA10Q8WWZ4 1543 aa24.34■■□□□ 1.49
CCDC40-208ENST00000572270 SHROOM2Q13796 1616 aa24.32■■□□□ 1.48
CCDC40-208ENST00000572270 NUP160Q12769 1436 aa24.31■■□□□ 1.48
CCDC40-208ENST00000572270 ADAMTS12P58397 1594 aa24.29■■□□□ 1.48
CCDC40-208ENST00000572270 KDM4FA0A1W2PPD8 638 aa24.26■■□□□ 1.47
CCDC40-208ENST00000572270 FAM69CQ0P6D2 419 aa24.25■■□□□ 1.47
CCDC40-208ENST00000572270 ABCC10Q5T3U5 1492 aa24.23■■□□□ 1.47
CCDC40-208ENST00000572270 KDM6BO15054 1643 aa24.22■■□□□ 1.47
CCDC40-208ENST00000572270 NPM1P06748 294 aaKnown RBP eCLIP24.17■■□□□ 1.46
CCDC40-208ENST00000572270 DIP2BQ9P265 1576 aa24.16■■□□□ 1.46
CCDC40-208ENST00000572270 FHAD1B1AJZ9 1412 aa24.16■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms